Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1487
  Reference Plasmid   1111525849475912_bin.18__k141_168125
  Reference Plasmid Size   50360
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0000049 DNBECDGN_00002 11423 6 Skin 0.05 protein_coding missense_variant MODERATE 9137C>T Pro3046Leu
M0000050 DNBECDGN_00002 14324 5 Skin 0.05 protein_coding missense_variant MODERATE 6236G>A Arg2079Gln
M0000051 DNBECDGN_00002 20235 8 Skin 0.07 protein_coding missense_variant MODERATE 325T>G Cys109Gly
M0000052 DNBECDGN_00004 22755 11 Skin 0.10 protein_coding missense_variant MODERATE 1205A>T Tyr402Phe
M0000053 DNBECDGN_00004 22762 11 Skin 0.10 protein_coding synonymous_variant LOW 1198C>T Leu400Leu
M0000054 DNBECDGN_00004 23432 14 Skin 0.13 protein_coding synonymous_variant LOW 528G>A Gly176Gly
M0000055 DNBECDGN_00004 23462 14 Skin 0.13 protein_coding synonymous_variant LOW 498A>C Ile166Ile
M0000056 DNBECDGN_00004 23480 14 Skin 0.13 protein_coding synonymous_variant LOW 480A>G Gln160Gln
M0000057 DNBECDGN_00029 50219 14 Skin 0.13 protein_coding synonymous_variant LOW 258C>T Phe86Phe
M0000058 DNBECDGN_00023 43570 3 Skin 0.03 protein_coding synonymous_variant LOW 609G>C Leu203Leu
M0000059 DNBECDGN_00002 5836 9 Skin 0.08 protein_coding missense_variant MODERATE 14724G>T Arg4908Ser
M0000060 DNBECDGN_00027 48175 6 Skin 0.05 protein_coding synonymous_variant LOW 438T>G Pro146Pro
M0000061 DNBECDGN_00027 48241 3 Skin 0.03 protein_coding synonymous_variant LOW 504G>A Glu168Glu
M0000062 DNBECDGN_00005 24238 3 Skin 0.03 protein_coding synonymous_variant LOW 1854C>T Asp618Asp
M0000063 DNBECDGN_00016 37600 4 Skin 0.04 protein_coding missense_variant MODERATE 586A>C Ile196Leu
M0000064 DNBECDGN_00016 37605 4 Skin 0.04 protein_coding synonymous_variant LOW 591T>C Cys197Cys
M0000065 DNBECDGN_00016 37644 5 Skin 0.05 protein_coding synonymous_variant LOW 630G>C Val210Val
M0000066 DNBECDGN_00016 37650 5 Skin 0.05 protein_coding synonymous_variant LOW 636T>C Asp212Asp
M0000067 DNBECDGN_00016 37653 5 Skin 0.05 protein_coding synonymous_variant LOW 639T>G Ala213Ala
M0000068 DNBECDGN_00016 37656 5 Skin 0.05 protein_coding synonymous_variant LOW 642G>T Ser214Ser
M0000069 DNBECDGN_00016 37666 5 Skin 0.05 protein_coding missense_variant MODERATE 652C>T Pro218Ser
M0000070 DNBECDGN_00016 37671 5 Skin 0.05 protein_coding synonymous_variant LOW 657C>T Ile219Ile
M0000071 DNBECDGN_00016 37701 4 Skin 0.04 protein_coding synonymous_variant LOW 687T>C Asn229Asn
M0000072 DNBECDGN_00016 37704 5 Skin 0.05 protein_coding synonymous_variant LOW 690G>C Arg230Arg
M0000073 DNBECDGN_00016 37875 3 Skin 0.03 protein_coding synonymous_variant LOW 861G>C Thr287Thr
M0000074 DNBECDGN_00016 37905 3 Skin 0.03 protein_coding synonymous_variant LOW 891G>T Gly297Gly
M0000075 DNBECDGN_00016 37911 3 Skin 0.03 protein_coding synonymous_variant LOW 897A>T Val299Val
M0000076 DNBECDGN_00016 37920 3 Skin 0.03 protein_coding synonymous_variant LOW 906G>C Leu302Leu
M0000077 DNBECDGN_00016 37932 3 Skin 0.03 protein_coding synonymous_variant LOW 918C>G Ala306Ala
M0000078 DNBECDGN_00005 25978 3 Skin 0.03 protein_coding synonymous_variant LOW 114T>C Val38Val
M0000079 DNBECDGN_00015 34440 18 Skin 0.16 protein_coding synonymous_variant LOW 2187G>C Thr729Thr
M0000080 DNBECDGN_00015 34443 18 Skin 0.16 protein_coding synonymous_variant LOW 2184A>C Ala728Ala
M0000081 DNBECDGN_00015 34446 18 Skin 0.16 protein_coding synonymous_variant LOW 2181C>T Asp727Asp
M0000082 DNBECDGN_00015 34463 18 Skin 0.16 protein_coding missense_variant MODERATE 2164A>G Ser722Gly
M0000083 DNBECDGN_00011 36977 20 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4709C>A None
M0000084 DNBECDGN_00011 36984 20 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4716G>A None
M0000085 DNBECDGN_00011 36997 20 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4729A>T None
M0000086 DNBECDGN_00011 36998 20 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4730C>T None
M0000087 DNBECDGN_00011 37010 20 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4742C>T None
M0000088 DNBECDGN_00011 37011 20 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4743T>C None
M0000089 DNBECDGN_00016 37034 20 Skin 0.18 protein_coding missense_variant MODERATE 20G>A Arg7Gln
M0000090 DNBECDGN_00016 37036 20 Skin 0.18 protein_coding synonymous_variant LOW 22C>T Leu8Leu
M0000091 DNBECDGN_00016 37038 20 Skin 0.18 protein_coding synonymous_variant LOW 24G>T Leu8Leu
M0000092 DNBECDGN_00016 37039 20 Skin 0.18 protein_coding missense_variant MODERATE 25A>T Thr9Ser
M0000093 DNBECDGN_00016 37062 21 Skin 0.19 protein_coding synonymous_variant LOW 48T>C Phe16Phe
M0000094 DNBECDGN_00025 46531 23 Skin 0.21 protein_coding missense_variant MODERATE 1042G>A Ala348Thr
M0000095 DNBECDGN_00016 38061 5 Skin 0.05 protein_coding synonymous_variant LOW 1047C>T Asp349Asp
M0000096 DNBECDGN_00016 37414 3 Skin 0.03 protein_coding synonymous_variant LOW 400T>C Leu134Leu
M0000097 DNBECDGN_00016 37446 4 Skin 0.04 protein_coding synonymous_variant LOW 432C>T Asp144Asp
M0000098 DNBECDGN_00016 37464 4 Skin 0.04 protein_coding synonymous_variant LOW 450C>A Gly150Gly
M0000099 DNBECDGN_00016 37500 5 Skin 0.05 protein_coding synonymous_variant LOW 486C>G Leu162Leu
M0000100 DNBECDGN_00016 37542 4 Skin 0.04 protein_coding synonymous_variant LOW 528G>C Gly176Gly
M0000101 DNBECDGN_00016 37551 4 Skin 0.04 protein_coding synonymous_variant LOW 537G>A Gln179Gln
M0000102 DNBECDGN_00027 47896 5 Skin 0.05 protein_coding synonymous_variant LOW 159C>G Thr53Thr
M0000103 DNBECDGN_00027 47980 3 Skin 0.03 protein_coding synonymous_variant LOW 243A>C Gly81Gly
M0000104 DNBECDGN_00027 47998 3 Skin 0.03 protein_coding synonymous_variant LOW 261C>G Leu87Leu
M0000105 DNBECDGN_00027 48004 3 Skin 0.03 protein_coding synonymous_variant LOW 267G>A Glu89Glu
M0000106 DNBECDGN_00027 48022 4 Skin 0.04 protein_coding synonymous_variant LOW 285T>C Ala95Ala
M0000107 DNBECDGN_00027 48044 3 Skin 0.03 protein_coding missense_variant MODERATE 307G>A Ala103Thr
M0000108 DNBECDGN_00027 48070 3 Skin 0.03 protein_coding synonymous_variant LOW 333T>C Phe111Phe
M0000109 DNBECDGN_00027 48121 4 Skin 0.04 protein_coding synonymous_variant LOW 384G>C Pro128Pro
M0000110 DNBECDGN_00027 48160 4 Skin 0.04 protein_coding synonymous_variant LOW 423C>G Pro141Pro
M0000111 DNBECDGN_00027 48166 4 Skin 0.04 protein_coding synonymous_variant LOW 429C>T Val143Val
M0000112 DNBECDGN_00027 48316 3 Skin 0.03 protein_coding synonymous_variant LOW 579C>G Ala193Ala
M0000113 DNBECDGN_00027 48385 5 Skin 0.05 protein_coding synonymous_variant LOW 648G>A Glu216Glu
M0000114 DNBECDGN_00016 37830 5 Skin 0.05 protein_coding synonymous_variant LOW 816C>G Pro272Pro
M0000115 DNBECDGN_00026 47564 3 Skin 0.03 protein_coding synonymous_variant LOW 864C>T Phe288Phe
M0000116 DNBECDGN_00027 47741 4 Skin 0.04 protein_coding missense_variant MODERATE 4T>C Ser2Pro
M0000117 DNBECDGN_00011 31318 4 Skin 0.04 protein_coding synonymous_variant LOW 951G>T Leu317Leu
M0000118 DNBECDGN_00011 31342 4 Skin 0.04 protein_coding synonymous_variant LOW 927G>C Ala309Ala
M0000119 DNBECDGN_00006 26212 3 Skin 0.03 protein_coding synonymous_variant LOW 663G>A Gln221Gln
M0000120 DNBECDGN_00006 26233 3 Skin 0.03 protein_coding synonymous_variant LOW 642C>T Gly214Gly
M0000121 DNBECDGN_00012 32340 3 Skin 0.03 protein_coding synonymous_variant LOW 579G>A Val193Val
M0000122 DNBECDGN_00012 32346 3 Skin 0.03 protein_coding synonymous_variant LOW 573G>C Val191Val
M0000123 DNBECDGN_00012 32376 3 Skin 0.03 protein_coding synonymous_variant LOW 543T>C Asn181Asn
M0000124 DNBECDGN_00012 32403 3 Skin 0.03 protein_coding synonymous_variant LOW 516C>G Ser172Ser
M0000125 DNBECDGN_00012 32405 3 Skin 0.03 protein_coding missense_variant MODERATE 514T>C Ser172Pro
M0000126 DNBECDGN_00012 32419 3 Skin 0.03 protein_coding missense_variant MODERATE 500A>T Tyr167Phe
M0000127 DNBECDGN_00012 32425 3 Skin 0.03 protein_coding missense_variant MODERATE 494T>C Ile165Thr
M0000128 DNBECDGN_00012 32454 3 Skin 0.03 protein_coding synonymous_variant LOW 465G>T Pro155Pro
M0000129 DNBECDGN_00012 32570 3 Skin 0.03 protein_coding missense_variant MODERATE 349A>G Thr117Ala
M0000130 DNBECDGN_00012 32571 3 Skin 0.03 protein_coding synonymous_variant LOW 348A>G Glu116Glu
M0000131 DNBECDGN_00012 32583 3 Skin 0.03 protein_coding synonymous_variant LOW 336C>G Ala112Ala
M0000132 DNBECDGN_00012 32601 3 Skin 0.03 protein_coding synonymous_variant LOW 318C>T Asp106Asp
M0000133 DNBECDGN_00012 32619 3 Skin 0.03 protein_coding synonymous_variant LOW 300C>G Thr100Thr
M0000134 DNBECDGN_00012 32622 3 Skin 0.03 protein_coding synonymous_variant LOW 297G>C Leu99Leu
M0000135 DNBECDGN_00012 32628 3 Skin 0.03 protein_coding missense_variant MODERATE 291A>C Glu97Asp
M0000136 DNBECDGN_00011 31156 4 Skin 0.04 protein_coding missense_variant MODERATE 1113T>G Asp371Glu
M0000137 DNBECDGN_00011 31177 4 Skin 0.04 protein_coding synonymous_variant LOW 1092T>C Asn364Asn
M0000138 DNBECDGN_00011 31216 4 Skin 0.04 protein_coding synonymous_variant LOW 1053C>T Gly351Gly
M0000139 DNBECDGN_00011 31223 4 Skin 0.04 protein_coding missense_variant MODERATE 1046G>C Ser349Thr
M0000140 DNBECDGN_00026 47411 3 Skin 0.03 protein_coding synonymous_variant LOW 711C>G Ala237Ala
M0000141 DNBECDGN_00016 38115 3 Skin 0.03 protein_coding synonymous_variant LOW 1101G>C Val367Val
M0000142 DNBECDGN_00016 38130 3 Skin 0.03 protein_coding synonymous_variant LOW 1116G>A Lys372Lys
M0000143 DNBECDGN_00016 38148 3 Skin 0.03 protein_coding synonymous_variant LOW 1134C>T Gly378Gly
M0000144 DNBECDGN_00016 38178 3 Skin 0.03 protein_coding synonymous_variant LOW 1164G>T Gly388Gly
M0000145 DNBECDGN_00016 38180 3 Skin 0.03 protein_coding missense_variant MODERATE 1166T>C Val389Ala
M0000146 DNBECDGN_00016 38183 3 Skin 0.03 protein_coding missense_variant MODERATE 1169A>G Asp390Gly
M0000147 DNBECDGN_00016 38184 3 Skin 0.03 protein_coding synonymous_variant LOW 1170T>C Asp390Asp
M0000148 DNBECDGN_00025 45510 3 Skin 0.03 protein_coding synonymous_variant LOW 21T>C Phe7Phe
M0000149 DNBECDGN_00025 45513 3 Skin 0.03 protein_coding synonymous_variant LOW 24C>T Tyr8Tyr
M0000150 DNBECDGN_00025 45522 3 Skin 0.03 protein_coding synonymous_variant LOW 33C>T Leu11Leu
M0000151 DNBECDGN_00025 45541 3 Skin 0.03 protein_coding missense_variant MODERATE 52A>G Ile18Val
M0000152 DNBECDGN_00025 45555 3 Skin 0.03 protein_coding synonymous_variant LOW 66G>C Leu22Leu
M0000153 DNBECDGN_00025 45561 3 Skin 0.03 protein_coding synonymous_variant LOW 72C>G Ala24Ala
M0000154 DNBECDGN_00025 45609 4 Skin 0.04 protein_coding synonymous_variant LOW 120A>T Ala40Ala
M0000155 DNBECDGN_00025 45639 4 Skin 0.04 protein_coding missense_variant MODERATE 150T>G Asp50Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term