Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1511
  Reference Plasmid   1111525849478649_bin.15__k141_129937
  Reference Plasmid Size   27161
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0002290 OHBCFOND_00003 3733 9 Skin 0.32 protein_coding synonymous_variant LOW 396A>C Gly132Gly
M0002291 OHBCFOND_00003 3766 9 Skin 0.32 protein_coding synonymous_variant LOW 429C>T Asp143Asp
M0002292 OHBCFOND_00003 3832 8 Skin 0.29 protein_coding synonymous_variant LOW 495G>C Gly165Gly
M0002293 OHBCFOND_00003 3847 8 Skin 0.29 protein_coding synonymous_variant LOW 510T>C Phe170Phe
M0002294 OHBCFOND_00003 3889 6 Skin 0.21 protein_coding synonymous_variant LOW 552C>G Ala184Ala
M0002295 OHBCFOND_00003 3922 7 Skin 0.25 protein_coding synonymous_variant LOW 585C>T Cys195Cys
M0002296 OHBCFOND_00003 3925 7 Skin 0.25 protein_coding synonymous_variant LOW 588G>A Ser196Ser
M0002297 OHBCFOND_00003 3928 7 Skin 0.25 protein_coding synonymous_variant LOW 591C>G Thr197Thr
M0002298 OHBCFOND_00003 3931 7 Skin 0.25 protein_coding synonymous_variant LOW 594G>A Lys198Lys
M0002299 OHBCFOND_00003 3940 7 Skin 0.25 protein_coding synonymous_variant LOW 603C>T Asp201Asp
M0002300 OHBCFOND_00012 10801 13 Skin 0.46 protein_coding synonymous_variant LOW 204T>C Ala68Ala
M0002301 OHBCFOND_00019 17042 10 Skin 0.36 protein_coding missense_variant MODERATE 38T>C Ile13Thr
M0002302 OHBCFOND_00021 19479 9 Skin 0.32 protein_coding missense_variant MODERATE 1237A>G Thr413Ala
M0002303 OHBCFOND_00003 4057 9 Skin 0.32 protein_coding synonymous_variant LOW 720G>C Leu240Leu
M0002304 OHBCFOND_00003 4060 9 Skin 0.32 protein_coding synonymous_variant LOW 723C>T Asp241Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term