Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1522
  Reference Plasmid   1111525849478674_bin.7__k141_153994
  Reference Plasmid Size   89327
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0002455 AILDNLDK_00004 3078 5 Skin 0.14 protein_coding synonymous_variant LOW 711T>G Pro237Pro
M0002456 AILDNLDK_00004 3084 4 Skin 0.11 protein_coding synonymous_variant LOW 705C>T Gly235Gly
M0002457 AILDNLDK_00004 3153 7 Skin 0.20 protein_coding synonymous_variant LOW 636C>G Thr212Thr
M0002458 AILDNLDK_00004 3156 7 Skin 0.20 protein_coding synonymous_variant LOW 633A>G Glu211Glu
M0002459 AILDNLDK_00004 3162 7 Skin 0.20 protein_coding synonymous_variant LOW 627C>G Val209Val
M0002460 AILDNLDK_00004 3370 8 Skin 0.23 protein_coding missense_variant MODERATE 419T>C Val140Ala
M0002461 AILDNLDK_00004 3723 3 Skin 0.09 protein_coding synonymous_variant LOW 66G>A Ala22Ala
M0002462 AILDNLDK_00003 3813 9 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -925A>T None
M0002463 AILDNLDK_00005 3888 3 Skin 0.09 protein_coding missense_variant MODERATE 30C>G Asp10Glu
M0002464 AILDNLDK_00005 4065 6 Skin 0.17 protein_coding synonymous_variant LOW 207A>G Pro69Pro
M0002465 AILDNLDK_00005 4260 9 Skin 0.26 protein_coding synonymous_variant LOW 402A>G Glu134Glu
M0002466 AILDNLDK_00005 4302 4 Skin 0.11 protein_coding synonymous_variant LOW 444C>G Val148Val
M0002467 AILDNLDK_00005 4339 9 Skin 0.26 protein_coding missense_variant MODERATE 481G>A Val161Ile
M0002468 AILDNLDK_00005 4396 9 Skin 0.26 protein_coding missense_variant MODERATE 538T>A Ser180Thr
M0002469 AILDNLDK_00005 4459 9 Skin 0.26 protein_coding missense_variant MODERATE 601A>G Thr201Ala
M0002470 AILDNLDK_00006 4721 4 Skin 0.11 protein_coding missense_variant MODERATE 173G>A Ser58Asn
M0002471 AILDNLDK_00006 4815 11 Skin 0.31 protein_coding missense_variant MODERATE 267C>G Asp89Glu
M0002472 AILDNLDK_00006 4828 11 Skin 0.31 protein_coding missense_variant MODERATE 280A>G Thr94Ala
M0002473 AILDNLDK_00006 4829 3 Skin 0.09 protein_coding missense_variant MODERATE 281C>T Thr94Ile
M0002474 AILDNLDK_00006 4830 3 Skin 0.09 protein_coding synonymous_variant LOW 282C>T Thr94Thr
M0002475 AILDNLDK_00006 4851 11 Skin 0.31 protein_coding synonymous_variant LOW 303G>A Gln101Gln
M0002476 AILDNLDK_00007 5071 9 Skin 0.26 protein_coding missense_variant MODERATE 4C>T His2Tyr
M0002477 AILDNLDK_00007 5156 8 Skin 0.23 protein_coding missense_variant MODERATE 89A>C His30Pro
M0002478 AILDNLDK_00007 5268 7 Skin 0.20 protein_coding synonymous_variant LOW 201C>G Gly67Gly
M0002479 AILDNLDK_00007 5532 6 Skin 0.17 protein_coding synonymous_variant LOW 465C>T Phe155Phe
M0002480 AILDNLDK_00007 5691 11 Skin 0.31 protein_coding synonymous_variant LOW 624T>C Phe208Phe
M0002481 AILDNLDK_00007 5809 8 Skin 0.23 protein_coding synonymous_variant LOW 742C>T Leu248Leu
M0002482 AILDNLDK_00007 6036 11 Skin 0.31 protein_coding synonymous_variant LOW 969T>C Asn323Asn
M0002483 AILDNLDK_00007 6729 5 Skin 0.14 protein_coding synonymous_variant LOW 1662C>G Val554Val
M0002484 AILDNLDK_00007 7048 11 Skin 0.31 protein_coding synonymous_variant LOW 1981T>C Leu661Leu
M0002485 AILDNLDK_00007 7060 5 Skin 0.14 protein_coding missense_variant MODERATE 1993G>A Gly665Ser
M0002486 AILDNLDK_00022 18315 3 Skin 0.09 protein_coding missense_variant MODERATE 161T>C Val54Ala
M0002487 AILDNLDK_00022 18335 3 Skin 0.09 protein_coding synonymous_variant LOW 141A>C Ala47Ala
M0002488 AILDNLDK_00022 18400 3 Skin 0.09 protein_coding missense_variant MODERATE 76G>C Val26Leu
M0002489 AILDNLDK_00023 19659 3 Skin 0.09 protein_coding synonymous_variant LOW 939T>C Asp313Asp
M0002490 AILDNLDK_00023 19863 3 Skin 0.09 protein_coding synonymous_variant LOW 1143C>G Leu381Leu
M0002491 AILDNLDK_00023 19869 3 Skin 0.09 protein_coding synonymous_variant LOW 1149C>G Leu383Leu
M0002492 AILDNLDK_00023 19872 3 Skin 0.09 protein_coding synonymous_variant LOW 1152T>C Asn384Asn
M0002493 AILDNLDK_00023 19884 3 Skin 0.09 protein_coding synonymous_variant LOW 1164A>G Glu388Glu
M0002494 AILDNLDK_00023 20023 3 Skin 0.09 protein_coding missense_variant MODERATE 1303A>G Thr435Ala
M0002495 AILDNLDK_00023 20039 3 Skin 0.09 protein_coding missense_variant MODERATE 1319T>A Leu440Gln
M0002496 AILDNLDK_00023 20136 3 Skin 0.09 protein_coding synonymous_variant LOW 1416T>C Gly472Gly
M0002497 AILDNLDK_00023 20350 3 Skin 0.09 protein_coding missense_variant MODERATE 1630G>A Ala544Thr
M0002498 AILDNLDK_00023 20443 4 Skin 0.11 protein_coding missense_variant MODERATE 1723G>A Ala575Thr
M0002499 AILDNLDK_00024 20583 3 Skin 0.09 protein_coding synonymous_variant LOW 81A>G Gln27Gln
M0002500 AILDNLDK_00024 20730 4 Skin 0.11 protein_coding synonymous_variant LOW 228A>C Ala76Ala
M0002501 AILDNLDK_00024 21250 4 Skin 0.11 protein_coding missense_variant MODERATE 748A>C Lys250Gln
M0002502 AILDNLDK_00024 21267 4 Skin 0.11 protein_coding synonymous_variant LOW 765G>A Glu255Glu
M0002503 AILDNLDK_00024 20827 3 Skin 0.09 protein_coding missense_variant MODERATE 325T>C Ser109Pro
M0002504 AILDNLDK_00025 22166 3 Skin 0.09 protein_coding missense_variant MODERATE 163A>G Thr55Ala
M0002505 AILDNLDK_00055 53356 5 Skin 0.14 protein_coding synonymous_variant LOW 756G>C Ala252Ala
M0002506 AILDNLDK_00055 53368 8 Skin 0.23 protein_coding synonymous_variant LOW 744A>G Leu248Leu
M0002507 AILDNLDK_00055 53449 6 Skin 0.17 protein_coding synonymous_variant LOW 663C>T Arg221Arg
M0002508 AILDNLDK_00055 53628 3 Skin 0.09 protein_coding missense_variant MODERATE 484G>T Gly162Cys
M0002509 AILDNLDK_00055 53892 8 Skin 0.23 protein_coding synonymous_variant LOW 220T>C Leu74Leu
M0002510 AILDNLDK_00056 54535 7 Skin 0.20 protein_coding missense_variant MODERATE 290T>G Leu97Arg
M0002511 AILDNLDK_00056 54729 4 Skin 0.11 protein_coding missense_variant MODERATE 484A>C Met162Leu
M0002512 AILDNLDK_00056 54735 4 Skin 0.11 protein_coding missense_variant MODERATE 490G>C Ala164Pro
M0002513 AILDNLDK_00056 54738 4 Skin 0.11 protein_coding missense_variant MODERATE 493A>G Thr165Ala
M0002514 AILDNLDK_00056 54741 4 Skin 0.11 protein_coding synonymous_variant LOW 496C>T Leu166Leu
M0002515 AILDNLDK_00056 54752 4 Skin 0.11 protein_coding synonymous_variant LOW 507A>G Glu169Glu
M0002516 AILDNLDK_00056 54812 4 Skin 0.11 protein_coding synonymous_variant LOW 567G>A Glu189Glu
M0002517 AILDNLDK_00057 55184 9 Skin 0.26 protein_coding synonymous_variant LOW 192T>C Pro64Pro
M0002518 AILDNLDK_00057 55193 5 Skin 0.14 protein_coding synonymous_variant LOW 201T>C Tyr67Tyr
M0002519 AILDNLDK_00057 55265 8 Skin 0.23 protein_coding synonymous_variant LOW 273C>G Ala91Ala
M0002520 AILDNLDK_00057 55268 8 Skin 0.23 protein_coding synonymous_variant LOW 276C>G Ser92Ser
M0002521 AILDNLDK_00058 55582 9 Skin 0.26 protein_coding synonymous_variant LOW 63C>A Ala21Ala
M0002522 AILDNLDK_00058 55648 9 Skin 0.26 protein_coding synonymous_variant LOW 129A>G Glu43Glu
M0002523 AILDNLDK_00001 1222 3 Skin 0.09 protein_coding synonymous_variant LOW 1170C>G Pro390Pro
M0002524 AILDNLDK_00001 1375 3 Skin 0.09 protein_coding synonymous_variant LOW 1323T>C Asp441Asp
M0002525 AILDNLDK_00001 1432 3 Skin 0.09 protein_coding synonymous_variant LOW 1380A>G Ala460Ala
M0002526 AILDNLDK_00001 1480 3 Skin 0.09 protein_coding synonymous_variant LOW 1428C>G Ala476Ala
M0002527 AILDNLDK_00002 2023 3 Skin 0.09 protein_coding synonymous_variant LOW 135G>C Val45Val
M0002528 AILDNLDK_00002 2026 3 Skin 0.09 protein_coding synonymous_variant LOW 138G>A Glu46Glu
M0002529 AILDNLDK_00002 2062 3 Skin 0.09 protein_coding synonymous_variant LOW 174T>C His58His
M0002530 AILDNLDK_00002 2063 3 Skin 0.09 protein_coding missense_variant MODERATE 175G>A Val59Met
M0002531 AILDNLDK_00002 2065 3 Skin 0.09 protein_coding synonymous_variant LOW 177G>C Val59Val
M0002532 AILDNLDK_00002 2203 4 Skin 0.11 protein_coding synonymous_variant LOW 315C>T Ala105Ala
M0002533 AILDNLDK_00002 2206 4 Skin 0.11 protein_coding synonymous_variant LOW 318G>C Ala106Ala
M0002534 AILDNLDK_00002 2227 4 Skin 0.11 protein_coding synonymous_variant LOW 339T>G Val113Val
M0002535 AILDNLDK_00002 2230 4 Skin 0.11 protein_coding synonymous_variant LOW 342C>G Pro114Pro
M0002536 AILDNLDK_00002 2231 4 Skin 0.11 protein_coding missense_variant MODERATE 343C>G Pro115Ala
M0002537 AILDNLDK_00002 2236 4 Skin 0.11 protein_coding synonymous_variant LOW 348A>G Glu116Glu
M0002538 AILDNLDK_00002 2239 4 Skin 0.11 protein_coding missense_variant MODERATE 351C>G Ser117Arg
M0002539 AILDNLDK_00002 2242 4 Skin 0.11 protein_coding synonymous_variant LOW 354G>C Leu118Leu
M0002540 AILDNLDK_00002 2245 4 Skin 0.11 protein_coding missense_variant MODERATE 357C>A Asp119Glu
M0002541 AILDNLDK_00002 2255 4 Skin 0.11 protein_coding missense_variant MODERATE 367G>T Ala123Ser
M0002542 AILDNLDK_00002 2334 4 Skin 0.11 protein_coding missense_variant MODERATE 446G>A Arg149Gln
M0002543 AILDNLDK_00002 2401 4 Skin 0.11 protein_coding synonymous_variant LOW 513G>C Thr171Thr
M0002544 AILDNLDK_00002 2435 4 Skin 0.11 protein_coding missense_variant MODERATE 547A>G Asn183Asp
M0002545 AILDNLDK_00004 3488 5 Skin 0.14 protein_coding missense_variant MODERATE 301C>A Gln101Lys
M0002546 AILDNLDK_00004 3494 5 Skin 0.14 protein_coding synonymous_variant LOW 295C>T Leu99Leu
M0002547 AILDNLDK_00004 3711 6 Skin 0.17 protein_coding synonymous_variant LOW 78T>C Asn26Asn
M0002548 AILDNLDK_00005 4029 3 Skin 0.09 protein_coding synonymous_variant LOW 171C>G Gly57Gly
M0002549 AILDNLDK_00005 4164 4 Skin 0.11 protein_coding synonymous_variant LOW 306C>T Asp102Asp
M0002550 AILDNLDK_00005 4384 7 Skin 0.20 protein_coding missense_variant MODERATE 526A>G Thr176Ala
M0002551 AILDNLDK_00005 4429 8 Skin 0.23 protein_coding synonymous_variant LOW 571T>C Leu191Leu
M0002552 AILDNLDK_00007 5895 10 Skin 0.29 protein_coding synonymous_variant LOW 828T>C Arg276Arg
M0002553 AILDNLDK_00007 5953 9 Skin 0.26 protein_coding missense_variant MODERATE 886T>A Ser296Thr
M0002554 AILDNLDK_00007 6057 7 Skin 0.20 protein_coding synonymous_variant LOW 990T>C Tyr330Tyr
M0002555 AILDNLDK_00007 6060 7 Skin 0.20 protein_coding synonymous_variant LOW 993A>C Gly331Gly
M0002556 AILDNLDK_00007 6462 9 Skin 0.26 protein_coding synonymous_variant LOW 1395G>C Val465Val
M0002557 AILDNLDK_00007 6531 7 Skin 0.20 protein_coding synonymous_variant LOW 1464C>A Ala488Ala
M0002558 AILDNLDK_00007 6534 7 Skin 0.20 protein_coding synonymous_variant LOW 1467C>T Val489Val
M0002559 AILDNLDK_00007 6576 8 Skin 0.23 protein_coding synonymous_variant LOW 1509T>C Arg503Arg
M0002560 AILDNLDK_00008 7258 7 Skin 0.20 protein_coding missense_variant MODERATE 122A>G Lys41Arg
M0002561 AILDNLDK_00007 7267 7 Skin 0.20 protein_coding missense_variant MODERATE 2200G>A Gly734Ser
M0002562 AILDNLDK_00007 7280 7 Skin 0.20 protein_coding missense_variant MODERATE 2213T>C Met738Thr
M0002563 AILDNLDK_00008 7316 6 Skin 0.17 protein_coding missense_variant MODERATE 64G>C Ala22Pro
M0002564 AILDNLDK_00008 7319 6 Skin 0.17 protein_coding missense_variant MODERATE 61C>A Leu21Ile
M0002565 AILDNLDK_00008 7331 6 Skin 0.17 protein_coding missense_variant MODERATE 49G>A Glu17Lys
M0002566 AILDNLDK_00008 7332 6 Skin 0.17 protein_coding synonymous_variant LOW 48G>C Pro16Pro
M0002567 AILDNLDK_00008 7347 6 Skin 0.17 protein_coding synonymous_variant LOW 33A>G Ala11Ala
M0002568 AILDNLDK_00003 7384 5 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4496G>C None
M0002569 AILDNLDK_00003 7385 5 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4497T>C None
M0002570 AILDNLDK_00003 7392 5 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4504A>T None
M0002571 AILDNLDK_00009 7419 5 Skin 0.14 protein_coding synonymous_variant LOW 12G>A Thr4Thr
M0002572 AILDNLDK_00009 7536 4 Skin 0.11 protein_coding synonymous_variant LOW 129G>T Gly43Gly
M0002573 AILDNLDK_00009 7545 4 Skin 0.11 protein_coding synonymous_variant LOW 138G>T Val46Val
M0002574 AILDNLDK_00009 7564 4 Skin 0.11 protein_coding missense_variant MODERATE 157A>G Thr53Ala
M0002575 AILDNLDK_00009 7611 5 Skin 0.14 protein_coding synonymous_variant LOW 204C>A Ala68Ala
M0002576 AILDNLDK_00009 7625 5 Skin 0.14 protein_coding missense_variant MODERATE 218C>T Ala73Val
M0002577 AILDNLDK_00009 7720 7 Skin 0.20 protein_coding missense_variant MODERATE 313T>C Ser105Pro
M0002578 AILDNLDK_00009 7721 7 Skin 0.20 protein_coding missense_variant MODERATE 314C>T Ser105Leu
M0002579 AILDNLDK_00010 7781 7 Skin 0.20 protein_coding synonymous_variant LOW 48A>C Val16Val
M0002580 AILDNLDK_00010 7811 8 Skin 0.23 protein_coding synonymous_variant LOW 78A>G Leu26Leu
M0002581 AILDNLDK_00010 7847 9 Skin 0.26 protein_coding synonymous_variant LOW 114G>C Thr38Thr
M0002582 AILDNLDK_00010 8190 6 Skin 0.17 protein_coding missense_variant MODERATE 457G>A Glu153Lys
M0002583 AILDNLDK_00008 8812 10 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -1433G>T None
M0002584 AILDNLDK_00012 9230 11 Skin 0.31 protein_coding synonymous_variant LOW 1035G>C Pro345Pro
M0002585 AILDNLDK_00012 9587 10 Skin 0.29 protein_coding synonymous_variant LOW 678C>G Gly226Gly
M0002586 AILDNLDK_00012 9602 11 Skin 0.31 protein_coding synonymous_variant LOW 663T>C Asn221Asn
M0002587 AILDNLDK_00012 9632 11 Skin 0.31 protein_coding synonymous_variant LOW 633T>C Ala211Ala
M0002588 AILDNLDK_00012 9671 11 Skin 0.31 protein_coding synonymous_variant LOW 594G>A Ser198Ser
M0002589 AILDNLDK_00012 9788 6 Skin 0.17 protein_coding synonymous_variant LOW 477C>T Gly159Gly
M0002590 AILDNLDK_00008 10313 11 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -2934T>G None
M0002591 AILDNLDK_00008 10316 11 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -2937T>C None
M0002592 AILDNLDK_00008 10407 11 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -3028T>G None
M0002593 AILDNLDK_00008 10409 5 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3030G>C None
M0002594 AILDNLDK_00013 10626 7 Skin 0.20 protein_coding synonymous_variant LOW 243G>A Thr81Thr
M0002595 AILDNLDK_00013 10668 8 Skin 0.23 protein_coding synonymous_variant LOW 201G>A Glu67Glu
M0002596 AILDNLDK_00013 10671 7 Skin 0.20 protein_coding synonymous_variant LOW 198G>A Gly66Gly
M0002597 AILDNLDK_00013 10755 10 Skin 0.29 protein_coding synonymous_variant LOW 114T>C Ile38Ile
M0002598 AILDNLDK_00013 10765 5 Skin 0.14 protein_coding missense_variant MODERATE 104T>A Phe35Tyr
M0002599 AILDNLDK_00008 10901 5 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3522A>C None
M0002600 AILDNLDK_00008 10902 5 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3523T>A None
M0002601 AILDNLDK_00008 10904 5 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3525T>C None
M0002602 AILDNLDK_00008 10907 5 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3528C>T None
M0002603 AILDNLDK_00008 10930 5 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3551G>A None
M0002604 AILDNLDK_00014 10936 5 Skin 0.14 protein_coding missense_variant MODERATE 794G>A Gly265Asp
M0002605 AILDNLDK_00014 10938 5 Skin 0.14 protein_coding synonymous_variant LOW 792C>G Gly264Gly
M0002606 AILDNLDK_00014 11005 10 Skin 0.29 protein_coding missense_variant MODERATE 725C>T Ala242Val
M0002607 AILDNLDK_00014 11016 4 Skin 0.11 protein_coding synonymous_variant LOW 714C>A Ala238Ala
M0002608 AILDNLDK_00014 11019 4 Skin 0.11 protein_coding synonymous_variant LOW 711C>G Ala237Ala
M0002609 AILDNLDK_00014 11070 10 Skin 0.29 protein_coding synonymous_variant LOW 660T>C Ala220Ala
M0002610 AILDNLDK_00014 11073 6 Skin 0.17 protein_coding synonymous_variant LOW 657T>C Gly219Gly
M0002611 AILDNLDK_00002 2191 3 Skin 0.09 protein_coding synonymous_variant LOW 303C>G Leu101Leu
M0002612 AILDNLDK_00005 3915 6 Skin 0.17 protein_coding synonymous_variant LOW 57T>C Asp19Asp
M0002613 AILDNLDK_00010 7895 8 Skin 0.23 protein_coding synonymous_variant LOW 162G>A Ala54Ala
M0002614 AILDNLDK_00011 8273 5 Skin 0.14 protein_coding synonymous_variant LOW 480T>C Asp160Asp
M0002615 AILDNLDK_00012 9158 7 Skin 0.20 protein_coding synonymous_variant LOW 1107C>T Leu369Leu
M0002616 AILDNLDK_00012 9170 7 Skin 0.20 protein_coding synonymous_variant LOW 1095C>T Ile365Ile
M0002617 AILDNLDK_00012 9506 3 Skin 0.09 protein_coding synonymous_variant LOW 759G>C Gly253Gly
M0002618 AILDNLDK_00012 9509 3 Skin 0.09 protein_coding synonymous_variant LOW 756C>A Gly252Gly
M0002619 AILDNLDK_00012 9761 5 Skin 0.14 protein_coding synonymous_variant LOW 504C>T Ala168Ala
M0002620 AILDNLDK_00059 57076 4 Skin 0.11 protein_coding synonymous_variant LOW 507A>G Gln169Gln
M0002621 AILDNLDK_00059 57265 3 Skin 0.09 protein_coding synonymous_variant LOW 696C>T Asp232Asp
M0002622 AILDNLDK_00059 57745 4 Skin 0.11 protein_coding synonymous_variant LOW 1176A>C Ala392Ala
M0002623 AILDNLDK_00059 58039 3 Skin 0.09 protein_coding synonymous_variant LOW 1470T>G Ala490Ala
M0002624 AILDNLDK_00059 58162 4 Skin 0.11 protein_coding synonymous_variant LOW 1593G>A Thr531Thr
M0002625 AILDNLDK_00056 59146 4 Skin 0.11 protein_coding downstream_gene_variant MODIFIER *4256C>A None
M0002626 AILDNLDK_00056 59205 4 Skin 0.11 protein_coding downstream_gene_variant MODIFIER *4315A>G None
M0002627 AILDNLDK_00060 59275 4 Skin 0.11 protein_coding synonymous_variant LOW 981C>G Thr327Thr
M0002628 AILDNLDK_00060 59635 3 Skin 0.09 protein_coding synonymous_variant LOW 621T>C Val207Val
M0002629 AILDNLDK_00060 59713 3 Skin 0.09 protein_coding synonymous_variant LOW 543C>G Thr181Thr
M0002630 AILDNLDK_00060 59783 3 Skin 0.09 protein_coding missense_variant MODERATE 473C>T Ala158Val
M0002631 AILDNLDK_00060 59884 3 Skin 0.09 protein_coding synonymous_variant LOW 372T>C Tyr124Tyr
M0002632 AILDNLDK_00055 53799 6 Skin 0.17 protein_coding missense_variant MODERATE 313A>T Ser105Cys
M0002633 AILDNLDK_00057 55209 4 Skin 0.11 protein_coding synonymous_variant LOW 217C>A Arg73Arg
M0002634 AILDNLDK_00057 55368 4 Skin 0.11 protein_coding missense_variant MODERATE 376G>A Ala126Thr
M0002635 AILDNLDK_00058 55708 5 Skin 0.14 protein_coding synonymous_variant LOW 189C>A Val63Val
M0002636 AILDNLDK_00058 55763 3 Skin 0.09 protein_coding missense_variant MODERATE 244C>G Arg82Gly
M0002637 AILDNLDK_00058 55819 5 Skin 0.14 protein_coding synonymous_variant LOW 300T>C His100His
M0002638 AILDNLDK_00058 55972 5 Skin 0.14 protein_coding synonymous_variant LOW 453C>G Ala151Ala
M0002639 AILDNLDK_00058 56002 6 Skin 0.17 protein_coding synonymous_variant LOW 483G>C Ala161Ala
M0002640 AILDNLDK_00058 56003 6 Skin 0.17 protein_coding missense_variant MODERATE 484G>C Ala162Pro
M0002641 AILDNLDK_00058 56095 6 Skin 0.17 protein_coding synonymous_variant LOW 576T>G Arg192Arg
M0002642 AILDNLDK_00058 56102 6 Skin 0.17 protein_coding missense_variant MODERATE 583A>G Thr195Ala
M0002643 AILDNLDK_00058 56154 3 Skin 0.09 protein_coding missense_variant MODERATE 635C>A Thr212Lys
M0002644 AILDNLDK_00058 56248 3 Skin 0.09 protein_coding synonymous_variant LOW 729G>A Thr243Thr
M0002645 AILDNLDK_00059 56661 6 Skin 0.17 protein_coding missense_variant MODERATE 92C>A Pro31His
M0002646 AILDNLDK_00012 10151 3 Skin 0.09 protein_coding synonymous_variant LOW 114G>A Val38Val
M0002647 AILDNLDK_00012 10171 3 Skin 0.09 protein_coding missense_variant MODERATE 94G>A Ala32Thr
M0002648 AILDNLDK_00008 10497 7 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -3118C>G None
M0002649 AILDNLDK_00014 11013 6 Skin 0.17 protein_coding synonymous_variant LOW 717G>C Pro239Pro
M0002650 AILDNLDK_00014 11286 4 Skin 0.11 protein_coding missense_variant MODERATE 444C>A Ser148Arg
M0002651 AILDNLDK_00014 11313 4 Skin 0.11 protein_coding synonymous_variant LOW 417C>G Ala139Ala
M0002652 AILDNLDK_00014 11316 4 Skin 0.11 protein_coding synonymous_variant LOW 414T>C Ile138Ile
M0002653 AILDNLDK_00014 11652 9 Skin 0.26 protein_coding synonymous_variant LOW 78G>A Glu26Glu
M0002654 AILDNLDK_00051 54151 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4005C>T None
M0002655 AILDNLDK_00058 56188 3 Skin 0.09 protein_coding missense_variant MODERATE 669A>T Gln223His
M0002656 AILDNLDK_00058 56194 3 Skin 0.09 protein_coding synonymous_variant LOW 675T>C Asp225Asp
M0002657 AILDNLDK_00058 56197 3 Skin 0.09 protein_coding synonymous_variant LOW 678A>C Gly226Gly
M0002658 AILDNLDK_00058 56200 3 Skin 0.09 protein_coding missense_variant MODERATE 681A>T Gln227His
M0002659 AILDNLDK_00058 56210 3 Skin 0.09 protein_coding missense_variant MODERATE 691G>T Ala231Ser
M0002660 AILDNLDK_00059 56750 5 Skin 0.14 protein_coding missense_variant MODERATE 181G>A Val61Met
M0002661 AILDNLDK_00059 56805 5 Skin 0.14 protein_coding missense_variant MODERATE 236T>G Val79Gly
M0002662 AILDNLDK_00059 56848 5 Skin 0.14 protein_coding synonymous_variant LOW 279A>G Glu93Glu
M0002663 AILDNLDK_00059 56887 5 Skin 0.14 protein_coding synonymous_variant LOW 318T>A Thr106Thr
M0002664 AILDNLDK_00059 57472 3 Skin 0.09 protein_coding synonymous_variant LOW 903G>A Glu301Glu
M0002665 AILDNLDK_00059 57892 3 Skin 0.09 protein_coding synonymous_variant LOW 1323C>G Thr441Thr
M0002666 AILDNLDK_00059 57895 3 Skin 0.09 protein_coding synonymous_variant LOW 1326T>G Arg442Arg
M0002667 AILDNLDK_00059 58825 3 Skin 0.09 protein_coding synonymous_variant LOW 2256C>T His752His
M0002668 AILDNLDK_00059 58869 3 Skin 0.09 protein_coding missense_variant MODERATE 2300A>G Asp767Gly
M0002669 AILDNLDK_00033 34343 3 Skin 0.09 protein_coding missense_variant MODERATE 148A>G Ile50Val
M0002670 AILDNLDK_00034 35102 3 Skin 0.09 protein_coding synonymous_variant LOW 495T>C Ala165Ala
M0002671 AILDNLDK_00034 35838 3 Skin 0.09 protein_coding missense_variant MODERATE 1231T>G Ser411Ala
M0002672 AILDNLDK_00031 36043 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3196T>C None
M0002673 AILDNLDK_00035 36481 3 Skin 0.09 protein_coding synonymous_variant LOW 531G>A Val177Val
M0002674 AILDNLDK_00035 36598 3 Skin 0.09 protein_coding synonymous_variant LOW 414T>C Asp138Asp
M0002675 AILDNLDK_00035 36670 3 Skin 0.09 protein_coding synonymous_variant LOW 342T>C Asp114Asp
M0002676 AILDNLDK_00036 37397 3 Skin 0.09 protein_coding missense_variant MODERATE 79A>C Met27Leu
M0002677 AILDNLDK_00036 37402 3 Skin 0.09 protein_coding synonymous_variant LOW 84G>C Pro28Pro
M0002678 AILDNLDK_00031 37704 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4857T>C None
M0002679 AILDNLDK_00038 38629 3 Skin 0.09 protein_coding synonymous_variant LOW 495C>A Ala165Ala
M0002680 AILDNLDK_00038 38635 3 Skin 0.09 protein_coding synonymous_variant LOW 501A>G Arg167Arg
M0002681 AILDNLDK_00038 38654 3 Skin 0.09 protein_coding synonymous_variant LOW 520T>C Leu174Leu
M0002682 AILDNLDK_00038 38812 3 Skin 0.09 protein_coding synonymous_variant LOW 678G>A Ala226Ala
M0002683 AILDNLDK_00038 38850 3 Skin 0.09 protein_coding missense_variant MODERATE 716C>G Thr239Ser
M0002684 AILDNLDK_00039 39081 3 Skin 0.09 protein_coding synonymous_variant LOW 132C>G Gly44Gly
M0002685 AILDNLDK_00039 39801 3 Skin 0.09 protein_coding synonymous_variant LOW 852T>C Phe284Phe
M0002686 AILDNLDK_00039 40092 3 Skin 0.09 protein_coding synonymous_variant LOW 1143G>C Ala381Ala
M0002687 AILDNLDK_00040 40757 3 Skin 0.09 protein_coding missense_variant MODERATE 164T>A Leu55Gln
M0002688 AILDNLDK_00040 40839 3 Skin 0.09 protein_coding synonymous_variant LOW 246C>A Ala82Ala
M0002689 AILDNLDK_00040 40878 3 Skin 0.09 protein_coding synonymous_variant LOW 285A>C Gly95Gly
M0002690 AILDNLDK_00040 40933 3 Skin 0.09 protein_coding missense_variant MODERATE 340T>C Ser114Pro
M0002691 AILDNLDK_00040 40941 3 Skin 0.09 protein_coding synonymous_variant LOW 348C>T Ala116Ala
M0002692 AILDNLDK_00040 41154 3 Skin 0.09 protein_coding synonymous_variant LOW 561T>C Asp187Asp
M0002693 AILDNLDK_00040 41190 3 Skin 0.09 protein_coding synonymous_variant LOW 597G>C Gly199Gly
M0002694 AILDNLDK_00040 41192 3 Skin 0.09 protein_coding missense_variant MODERATE 599C>A Ala200Asp
M0002695 AILDNLDK_00040 41193 3 Skin 0.09 protein_coding synonymous_variant LOW 600C>A Ala200Ala
M0002696 AILDNLDK_00040 41438 3 Skin 0.09 protein_coding missense_variant MODERATE 845G>A Ser282Asn
M0002697 AILDNLDK_00040 41493 3 Skin 0.09 protein_coding synonymous_variant LOW 900G>A Pro300Pro
M0002698 AILDNLDK_00040 41505 3 Skin 0.09 protein_coding synonymous_variant LOW 912A>T Gly304Gly
M0002699 AILDNLDK_00040 41508 3 Skin 0.09 protein_coding synonymous_variant LOW 915G>C Pro305Pro
M0002700 AILDNLDK_00040 41538 3 Skin 0.09 protein_coding synonymous_variant LOW 945G>A Ala315Ala
M0002701 AILDNLDK_00040 41568 3 Skin 0.09 protein_coding synonymous_variant LOW 975C>T Ile325Ile
M0002702 AILDNLDK_00040 41589 3 Skin 0.09 protein_coding synonymous_variant LOW 996T>C Arg332Arg
M0002703 AILDNLDK_00040 41633 3 Skin 0.09 protein_coding missense_variant MODERATE 1040T>C Val347Ala
M0002704 AILDNLDK_00041 41684 3 Skin 0.09 protein_coding synonymous_variant LOW 27T>C Ile9Ile
M0002705 AILDNLDK_00041 41936 3 Skin 0.09 protein_coding synonymous_variant LOW 279G>T Arg93Arg
M0002706 AILDNLDK_00041 41957 3 Skin 0.09 protein_coding missense_variant MODERATE 300G>C Gln100His
M0002707 AILDNLDK_00041 42028 3 Skin 0.09 protein_coding missense_variant MODERATE 371G>A Arg124His
M0002708 AILDNLDK_00041 42059 4 Skin 0.11 protein_coding synonymous_variant LOW 402G>A Gln134Gln
M0002709 AILDNLDK_00041 42070 4 Skin 0.11 protein_coding missense_variant MODERATE 413C>A Pro138Gln
M0002710 AILDNLDK_00041 42166 3 Skin 0.09 protein_coding missense_variant MODERATE 509T>G Leu170Arg
M0002711 AILDNLDK_00041 42230 3 Skin 0.09 protein_coding synonymous_variant LOW 573C>T Asp191Asp
M0002712 AILDNLDK_00041 42231 3 Skin 0.09 protein_coding missense_variant MODERATE 574G>A Ala192Thr
M0002713 AILDNLDK_00042 42441 3 Skin 0.09 protein_coding missense_variant MODERATE 29G>A Arg10Gln
M0002714 AILDNLDK_00042 42891 3 Skin 0.09 protein_coding missense_variant MODERATE 479G>C Ser160Thr
M0002715 AILDNLDK_00042 42899 3 Skin 0.09 protein_coding missense_variant MODERATE 487G>A Ala163Thr
M0002716 AILDNLDK_00043 43326 3 Skin 0.09 protein_coding synonymous_variant LOW 318G>A Ala106Ala
M0002717 AILDNLDK_00043 43458 3 Skin 0.09 protein_coding synonymous_variant LOW 450T>C Gly150Gly
M0002718 AILDNLDK_00043 43688 3 Skin 0.09 protein_coding missense_variant MODERATE 680A>C Glu227Ala
M0002719 AILDNLDK_00044 44064 3 Skin 0.09 protein_coding synonymous_variant LOW 234A>G Lys78Lys
M0002720 AILDNLDK_00044 44275 3 Skin 0.09 protein_coding missense_variant MODERATE 23T>C Leu8Pro
M0002721 AILDNLDK_00044 44283 3 Skin 0.09 protein_coding synonymous_variant LOW 15G>A Gln5Gln
M0002722 AILDNLDK_00044 44308 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -11G>A None
M0002723 AILDNLDK_00045 45025 3 Skin 0.09 protein_coding synonymous_variant LOW 153T>G Leu51Leu
M0002724 AILDNLDK_00045 45049 3 Skin 0.09 protein_coding synonymous_variant LOW 129C>T Asn43Asn
M0002725 AILDNLDK_00045 45061 3 Skin 0.09 protein_coding synonymous_variant LOW 117A>G Thr39Thr
M0002726 AILDNLDK_00053 51945 3 Skin 0.09 protein_coding synonymous_variant LOW 75G>T Arg25Arg
M0002727 AILDNLDK_00053 51951 3 Skin 0.09 protein_coding synonymous_variant LOW 69G>A Ala23Ala
M0002728 AILDNLDK_00053 51957 3 Skin 0.09 protein_coding synonymous_variant LOW 63A>G Ala21Ala
M0002729 AILDNLDK_00054 52091 3 Skin 0.09 protein_coding synonymous_variant LOW 678T>C His226His
M0002730 AILDNLDK_00054 52339 3 Skin 0.09 protein_coding synonymous_variant LOW 430A>C Arg144Arg
M0002731 AILDNLDK_00054 52594 3 Skin 0.09 protein_coding missense_variant MODERATE 175G>A Gly59Ser
M0002732 AILDNLDK_00007 5364 4 Skin 0.11 protein_coding synonymous_variant LOW 297G>A Lys99Lys
M0002733 AILDNLDK_00012 10073 4 Skin 0.11 protein_coding synonymous_variant LOW 192G>T Val64Val
M0002734 AILDNLDK_00013 10638 4 Skin 0.11 protein_coding synonymous_variant LOW 231C>T Arg77Arg
M0002735 AILDNLDK_00014 11325 5 Skin 0.14 protein_coding synonymous_variant LOW 405G>C Thr135Thr
M0002736 AILDNLDK_00014 11685 6 Skin 0.17 protein_coding synonymous_variant LOW 45C>A Ile15Ile
M0002737 AILDNLDK_00015 11809 8 Skin 0.23 protein_coding missense_variant MODERATE 796A>G Thr266Ala
M0002738 AILDNLDK_00015 11814 5 Skin 0.14 protein_coding missense_variant MODERATE 791G>A Gly264Asp
M0002739 AILDNLDK_00015 11815 5 Skin 0.14 protein_coding missense_variant MODERATE 790G>A Gly264Ser
M0002740 AILDNLDK_00015 11960 8 Skin 0.23 protein_coding synonymous_variant LOW 645C>T His215His
M0002741 AILDNLDK_00015 12029 4 Skin 0.11 protein_coding synonymous_variant LOW 576T>C Arg192Arg
M0002742 AILDNLDK_00015 12161 6 Skin 0.17 protein_coding synonymous_variant LOW 444T>C Gly148Gly
M0002743 AILDNLDK_00015 12254 5 Skin 0.14 protein_coding synonymous_variant LOW 351T>C Ala117Ala
M0002744 AILDNLDK_00015 12275 8 Skin 0.23 protein_coding synonymous_variant LOW 330T>G Val110Val
M0002745 AILDNLDK_00015 12326 4 Skin 0.11 protein_coding synonymous_variant LOW 279G>A Gln93Gln
M0002746 AILDNLDK_00015 12347 4 Skin 0.11 protein_coding synonymous_variant LOW 258G>C Val86Val
M0002747 AILDNLDK_00016 12619 4 Skin 0.11 protein_coding missense_variant MODERATE 480A>C Lys160Asn
M0002748 AILDNLDK_00016 12661 8 Skin 0.23 protein_coding synonymous_variant LOW 438T>A Gly146Gly
M0002749 AILDNLDK_00016 12757 6 Skin 0.17 protein_coding synonymous_variant LOW 342G>A Ala114Ala
M0002750 AILDNLDK_00016 13086 5 Skin 0.14 protein_coding missense_variant MODERATE 13G>C Glu5Gln
M0002751 AILDNLDK_00017 13173 6 Skin 0.17 protein_coding synonymous_variant LOW 1101T>C Ile367Ile
M0002752 AILDNLDK_00017 13205 6 Skin 0.17 protein_coding missense_variant MODERATE 1069G>C Glu357Gln
M0002753 AILDNLDK_00017 13220 6 Skin 0.17 protein_coding missense_variant MODERATE 1054A>G Met352Val
M0002754 AILDNLDK_00017 13272 6 Skin 0.17 protein_coding synonymous_variant LOW 1002G>A Ala334Ala
M0002755 AILDNLDK_00017 13295 6 Skin 0.17 protein_coding missense_variant MODERATE 979T>C Cys327Arg
M0002756 AILDNLDK_00017 13296 6 Skin 0.17 protein_coding missense_variant MODERATE 978A>T Glu326Asp
M0002757 AILDNLDK_00017 13304 6 Skin 0.17 protein_coding synonymous_variant LOW 970C>T Leu324Leu
M0002758 AILDNLDK_00017 13305 6 Skin 0.17 protein_coding synonymous_variant LOW 969C>A Ala323Ala
M0002759 AILDNLDK_00017 13306 6 Skin 0.17 protein_coding missense_variant MODERATE 968C>A Ala323Asp
M0002760 AILDNLDK_00017 13308 6 Skin 0.17 protein_coding synonymous_variant LOW 966G>C Ala322Ala
M0002761 AILDNLDK_00017 13362 4 Skin 0.11 protein_coding synonymous_variant LOW 912G>A Gly304Gly
M0002762 AILDNLDK_00017 13363 4 Skin 0.11 protein_coding missense_variant MODERATE 911G>A Gly304Glu
M0002763 AILDNLDK_00017 13377 6 Skin 0.17 protein_coding synonymous_variant LOW 897A>C Pro299Pro
M0002764 AILDNLDK_00017 13404 6 Skin 0.17 protein_coding synonymous_variant LOW 870G>C Arg290Arg
M0002765 AILDNLDK_00017 13416 6 Skin 0.17 protein_coding synonymous_variant LOW 858C>A Gly286Gly
M0002766 AILDNLDK_00017 13435 6 Skin 0.17 protein_coding missense_variant MODERATE 839A>T His280Leu
M0002767 AILDNLDK_00015 11772 3 Skin 0.09 protein_coding missense_variant MODERATE 833T>G Val278Gly
M0002768 AILDNLDK_00015 11813 3 Skin 0.09 protein_coding synonymous_variant LOW 792T>C Gly264Gly
M0002769 AILDNLDK_00015 11816 3 Skin 0.09 protein_coding synonymous_variant LOW 789G>C Ala263Ala
M0002770 AILDNLDK_00015 11817 3 Skin 0.09 protein_coding missense_variant MODERATE 788C>G Ala263Gly
M0002771 AILDNLDK_00015 11819 3 Skin 0.09 protein_coding synonymous_variant LOW 786T>C His262His
M0002772 AILDNLDK_00015 11820 3 Skin 0.09 protein_coding missense_variant MODERATE 785A>G His262Arg
M0002773 AILDNLDK_00015 11851 3 Skin 0.09 protein_coding missense_variant MODERATE 754A>G Thr252Ala
M0002774 AILDNLDK_00015 12191 6 Skin 0.17 protein_coding synonymous_variant LOW 414T>C Thr138Thr
M0002775 AILDNLDK_00007 6202 6 Skin 0.17 protein_coding missense_variant MODERATE 1135C>A Gln379Lys
M0002776 AILDNLDK_00007 6204 6 Skin 0.17 protein_coding missense_variant MODERATE 1137G>C Gln379His
M0002777 AILDNLDK_00007 6211 6 Skin 0.17 protein_coding missense_variant MODERATE 1144G>A Asp382Asn
M0002778 AILDNLDK_00007 6212 6 Skin 0.17 protein_coding missense_variant MODERATE 1145A>G Asp382Gly
M0002779 AILDNLDK_00007 6213 6 Skin 0.17 protein_coding synonymous_variant LOW 1146T>C Asp382Asp
M0002780 AILDNLDK_00007 6231 6 Skin 0.17 protein_coding synonymous_variant LOW 1164C>G Val388Val
M0002781 AILDNLDK_00007 6240 6 Skin 0.17 protein_coding synonymous_variant LOW 1173T>C Tyr391Tyr
M0002782 AILDNLDK_00015 11980 4 Skin 0.11 protein_coding missense_variant MODERATE 625G>A Ala209Thr
M0002783 AILDNLDK_00016 12700 3 Skin 0.09 protein_coding synonymous_variant LOW 399T>C Asp133Asp
M0002784 AILDNLDK_00016 13026 4 Skin 0.11 protein_coding missense_variant MODERATE 73C>G His25Asp
M0002785 AILDNLDK_00017 13793 4 Skin 0.11 protein_coding missense_variant MODERATE 481G>C Glu161Gln
M0002786 AILDNLDK_00017 13794 4 Skin 0.11 protein_coding synonymous_variant LOW 480G>T Leu160Leu
M0002787 AILDNLDK_00017 13833 4 Skin 0.11 protein_coding synonymous_variant LOW 441G>C Ala147Ala
M0002788 AILDNLDK_00017 13838 4 Skin 0.11 protein_coding synonymous_variant LOW 436T>C Leu146Leu
M0002789 AILDNLDK_00017 13913 3 Skin 0.09 protein_coding missense_variant MODERATE 361C>G Gln121Glu
M0002790 AILDNLDK_00017 13917 3 Skin 0.09 protein_coding synonymous_variant LOW 357T>C His119His
M0002791 AILDNLDK_00017 13995 3 Skin 0.09 protein_coding synonymous_variant LOW 279T>C Pro93Pro
M0002792 AILDNLDK_00017 14011 3 Skin 0.09 protein_coding missense_variant MODERATE 263A>G His88Arg
M0002793 AILDNLDK_00017 14237 3 Skin 0.09 protein_coding missense_variant MODERATE 37C>G Pro13Ala
M0002794 AILDNLDK_00017 14240 3 Skin 0.09 protein_coding missense_variant MODERATE 34T>C Ser12Pro
M0002795 AILDNLDK_00017 14244 3 Skin 0.09 protein_coding synonymous_variant LOW 30C>T Gly10Gly
M0002796 AILDNLDK_00018 14454 3 Skin 0.09 protein_coding synonymous_variant LOW 159G>C Ala53Ala
M0002797 AILDNLDK_00018 14511 3 Skin 0.09 protein_coding synonymous_variant LOW 216T>C Thr72Thr
M0002798 AILDNLDK_00018 14514 3 Skin 0.09 protein_coding synonymous_variant LOW 219T>C His73His
M0002799 AILDNLDK_00018 14610 3 Skin 0.09 protein_coding missense_variant MODERATE 315G>T Arg105Ser
M0002800 AILDNLDK_00018 14619 3 Skin 0.09 protein_coding synonymous_variant LOW 324T>C Asp108Asp
M0002801 AILDNLDK_00018 14808 3 Skin 0.09 protein_coding synonymous_variant LOW 513T>G Val171Val
M0002802 AILDNLDK_00018 14820 3 Skin 0.09 protein_coding synonymous_variant LOW 525G>T Gly175Gly
M0002803 AILDNLDK_00018 14838 3 Skin 0.09 protein_coding synonymous_variant LOW 543T>C Asp181Asp
M0002804 AILDNLDK_00018 14841 3 Skin 0.09 protein_coding synonymous_variant LOW 546C>T Asp182Asp
M0002805 AILDNLDK_00018 14844 3 Skin 0.09 protein_coding synonymous_variant LOW 549G>A Glu183Glu
M0002806 AILDNLDK_00015 12281 3 Skin 0.09 protein_coding synonymous_variant LOW 324C>T Pro108Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
AILDNLDK_00069 Cobalt (Co), Nickel (Ni) 83.6 0 1 1070 0.9935 0.9944 experiment
AILDNLDK_00027 Triclosan [class: Phenolic compounds], n-hexane [class: Alkane], p-xylene [class: Aromatic hydrocarbons] 75.3 0 1 1047 0.9981 0.9952 prediction
AILDNLDK_00069 Nickel (Ni), Cobalt (Co), Cadmium (Cd) 84.7 0 1 1073 0.9972 0.9963 prediction
AILDNLDK_00073 Cobalt (Co), Nickel (Ni) 70.7 2.2e-51 1 147 1.0000 0.9932 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
AILDNLDK_00039 QFS63594.1|GT20 100 0 1 510 1 1
AILDNLDK_00043 QFS63590.1|GT2 100 1.7e-181 1 252 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
AILDNLDK_00068 2.A.1.31.1 78 4.1e-192 1 446 1.0000 0.9409 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
AILDNLDK_00069 2.A.6.1.1 83.6 0 1 1070 0.9935 0.9944 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily