Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1525
  Reference Plasmid   1111525849478674_bin.7__k141_195301
  Reference Plasmid Size   41131
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0004150 ICJMGBNG_00001 303 3 Skin 0.21 protein_coding synonymous_variant LOW 1593A>G Glu531Glu
M0004151 ICJMGBNG_00001 309 3 Skin 0.21 protein_coding synonymous_variant LOW 1587C>T Val529Val
M0004152 ICJMGBNG_00001 363 5 Skin 0.36 protein_coding synonymous_variant LOW 1533T>C Thr511Thr
M0004153 ICJMGBNG_00001 366 5 Skin 0.36 protein_coding synonymous_variant LOW 1530T>C Val510Val
M0004154 ICJMGBNG_00001 397 5 Skin 0.36 protein_coding missense_variant MODERATE 1499T>C Val500Ala
M0004155 ICJMGBNG_00001 399 5 Skin 0.36 protein_coding synonymous_variant LOW 1497C>G Pro499Pro
M0004156 ICJMGBNG_00001 474 4 Skin 0.29 protein_coding synonymous_variant LOW 1422C>A Arg474Arg
M0004157 ICJMGBNG_00001 684 4 Skin 0.29 protein_coding synonymous_variant LOW 1212G>C Ala404Ala
M0004158 ICJMGBNG_00001 696 4 Skin 0.29 protein_coding synonymous_variant LOW 1200T>C Arg400Arg
M0004159 ICJMGBNG_00001 714 4 Skin 0.29 protein_coding synonymous_variant LOW 1182T>C Arg394Arg
M0004160 ICJMGBNG_00001 782 3 Skin 0.21 protein_coding missense_variant MODERATE 1114A>T Thr372Ser
M0004161 ICJMGBNG_00001 786 3 Skin 0.21 protein_coding synonymous_variant LOW 1110G>T Val370Val
M0004162 ICJMGBNG_00001 842 3 Skin 0.21 protein_coding missense_variant MODERATE 1054C>A Pro352Thr
M0004163 ICJMGBNG_00001 864 3 Skin 0.21 protein_coding synonymous_variant LOW 1032G>C Arg344Arg
M0004164 ICJMGBNG_00001 1067 5 Skin 0.36 protein_coding synonymous_variant LOW 829C>T Leu277Leu
M0004165 ICJMGBNG_00001 1311 5 Skin 0.36 protein_coding synonymous_variant LOW 585G>A Glu195Glu
M0004166 ICJMGBNG_00001 1521 5 Skin 0.36 protein_coding synonymous_variant LOW 375G>C Val125Val
M0004167 ICJMGBNG_00001 1644 3 Skin 0.21 protein_coding synonymous_variant LOW 252G>A Leu84Leu
M0004168 ICJMGBNG_00002 1966 5 Skin 0.36 protein_coding synonymous_variant LOW 1548T>C Ile516Ile
M0004169 ICJMGBNG_00002 2002 5 Skin 0.36 protein_coding synonymous_variant LOW 1512A>G Gln504Gln
M0004170 ICJMGBNG_00002 2050 5 Skin 0.36 protein_coding synonymous_variant LOW 1464T>C Tyr488Tyr
M0004171 ICJMGBNG_00002 2165 4 Skin 0.29 protein_coding missense_variant MODERATE 1349A>C Glu450Ala
M0004172 ICJMGBNG_00002 2200 4 Skin 0.29 protein_coding synonymous_variant LOW 1314C>T Arg438Arg
M0004173 ICJMGBNG_00002 2254 5 Skin 0.36 protein_coding missense_variant MODERATE 1260T>G Asp420Glu
M0004174 ICJMGBNG_00002 2347 5 Skin 0.36 protein_coding synonymous_variant LOW 1167A>G Ala389Ala
M0004175 ICJMGBNG_00002 2352 3 Skin 0.21 protein_coding missense_variant MODERATE 1162T>G Ser388Ala
M0004176 ICJMGBNG_00002 2368 3 Skin 0.21 protein_coding synonymous_variant LOW 1146G>A Ala382Ala
M0004177 ICJMGBNG_00002 2397 5 Skin 0.36 protein_coding missense_variant MODERATE 1117A>G Met373Val
M0004178 ICJMGBNG_00002 2526 3 Skin 0.21 protein_coding synonymous_variant LOW 988C>T Leu330Leu
M0004179 ICJMGBNG_00002 2528 3 Skin 0.21 protein_coding missense_variant MODERATE 986T>A Leu329Gln
M0004180 ICJMGBNG_00002 2906 3 Skin 0.21 protein_coding missense_variant MODERATE 608C>T Ala203Val
M0004181 ICJMGBNG_00002 3061 4 Skin 0.29 protein_coding synonymous_variant LOW 453G>C Ser151Ser
M0004182 ICJMGBNG_00002 3151 5 Skin 0.36 protein_coding synonymous_variant LOW 363T>C Phe121Phe
M0004183 ICJMGBNG_00003 3856 5 Skin 0.36 protein_coding synonymous_variant LOW 426T>G Val142Val
M0004184 ICJMGBNG_00003 4008 6 Skin 0.43 protein_coding missense_variant MODERATE 274A>G Ser92Gly
M0004185 ICJMGBNG_00004 4323 5 Skin 0.36 protein_coding synonymous_variant LOW 661T>C Leu221Leu
M0004186 ICJMGBNG_00004 4582 6 Skin 0.43 protein_coding synonymous_variant LOW 402C>T Gly134Gly
M0004187 ICJMGBNG_00006 6108 6 Skin 0.43 protein_coding synonymous_variant LOW 597T>G Leu199Leu
M0004188 ICJMGBNG_00006 6411 6 Skin 0.43 protein_coding synonymous_variant LOW 294T>C Gly98Gly
M0004189 ICJMGBNG_00002 6929 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -3416C>A None
M0004190 ICJMGBNG_00007 7605 6 Skin 0.43 protein_coding missense_variant MODERATE 495A>C Gln165His
M0004191 ICJMGBNG_00007 7765 6 Skin 0.43 protein_coding missense_variant MODERATE 655G>A Asp219Asn
M0004192 ICJMGBNG_00007 7944 6 Skin 0.43 protein_coding synonymous_variant LOW 834T>C Asp278Asp
M0004193 ICJMGBNG_00007 7989 5 Skin 0.36 protein_coding synonymous_variant LOW 879G>A Gln293Gln
M0004194 ICJMGBNG_00007 8148 6 Skin 0.43 protein_coding synonymous_variant LOW 1038A>G Ser346Ser
M0004195 ICJMGBNG_00007 8247 6 Skin 0.43 protein_coding synonymous_variant LOW 1137A>G Val379Val
M0004196 ICJMGBNG_00002 8282 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4769T>C None
M0004197 ICJMGBNG_00008 8393 6 Skin 0.43 protein_coding synonymous_variant LOW 48T>C Gly16Gly
M0004198 ICJMGBNG_00008 8442 5 Skin 0.36 protein_coding missense_variant MODERATE 97G>T Ala33Ser
M0004199 ICJMGBNG_00008 8447 6 Skin 0.43 protein_coding synonymous_variant LOW 102A>G Pro34Pro
M0004200 ICJMGBNG_00008 8489 3 Skin 0.21 protein_coding synonymous_variant LOW 144C>T Pro48Pro
M0004201 ICJMGBNG_00008 8619 6 Skin 0.43 protein_coding missense_variant MODERATE 274A>G Thr92Ala
M0004202 ICJMGBNG_00008 8760 6 Skin 0.43 protein_coding missense_variant MODERATE 415A>G Thr139Ala
M0004203 ICJMGBNG_00008 8816 6 Skin 0.43 protein_coding synonymous_variant LOW 471A>G Lys157Lys
M0004204 ICJMGBNG_00008 9346 6 Skin 0.43 protein_coding splice_region_variant&stop_retained_variant LOW 1001A>G Ter334Ter
M0004205 ICJMGBNG_00009 9511 5 Skin 0.36 protein_coding synonymous_variant LOW 165T>C Arg55Arg
M0004206 ICJMGBNG_00009 9514 5 Skin 0.36 protein_coding synonymous_variant LOW 168T>C Phe56Phe
M0004207 ICJMGBNG_00009 9632 5 Skin 0.36 protein_coding missense_variant MODERATE 286G>A Ala96Thr
M0004208 ICJMGBNG_00009 9946 5 Skin 0.36 protein_coding synonymous_variant LOW 600A>G Ser200Ser
M0004209 ICJMGBNG_00027 33856 4 Skin 0.29 protein_coding synonymous_variant LOW 1002C>T Ser334Ser
M0004210 ICJMGBNG_00027 33934 3 Skin 0.21 protein_coding synonymous_variant LOW 924C>T Ser308Ser
M0004211 ICJMGBNG_00027 33961 3 Skin 0.21 protein_coding synonymous_variant LOW 897A>G Glu299Glu
M0004212 ICJMGBNG_00027 34294 8 Skin 0.57 protein_coding synonymous_variant LOW 564T>C Pro188Pro
M0004213 ICJMGBNG_00027 34465 5 Skin 0.36 protein_coding synonymous_variant LOW 393G>A Gln131Gln
M0004214 ICJMGBNG_00027 34638 8 Skin 0.57 protein_coding missense_variant MODERATE 220A>G Ser74Gly
M0004215 ICJMGBNG_00024 35041 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4383C>A None
M0004216 ICJMGBNG_00024 35042 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4384C>G None
M0004217 ICJMGBNG_00024 35235 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4577A>G None
M0004218 ICJMGBNG_00024 35236 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4578C>T None
M0004219 ICJMGBNG_00024 35238 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4580T>C None
M0004220 ICJMGBNG_00024 35246 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4588T>C None
M0004221 ICJMGBNG_00028 35316 5 Skin 0.36 protein_coding missense_variant MODERATE 875G>A Gly292Glu
M0004222 ICJMGBNG_00028 35317 5 Skin 0.36 protein_coding missense_variant MODERATE 874G>C Gly292Arg
M0004223 ICJMGBNG_00028 35336 5 Skin 0.36 protein_coding synonymous_variant LOW 855G>C Arg285Arg
M0004224 ICJMGBNG_00028 35348 5 Skin 0.36 protein_coding synonymous_variant LOW 843G>T Arg281Arg
M0004225 ICJMGBNG_00028 35411 3 Skin 0.21 protein_coding synonymous_variant LOW 780C>T Phe260Phe
M0004226 ICJMGBNG_00028 35426 3 Skin 0.21 protein_coding synonymous_variant LOW 765C>T Asp255Asp
M0004227 ICJMGBNG_00028 35442 3 Skin 0.21 protein_coding missense_variant MODERATE 749C>A Ala250Asp
M0004228 ICJMGBNG_00028 35445 3 Skin 0.21 protein_coding missense_variant MODERATE 746A>G His249Arg
M0004229 ICJMGBNG_00028 35447 3 Skin 0.21 protein_coding synonymous_variant LOW 744C>T Phe248Phe
M0004230 ICJMGBNG_00028 35451 3 Skin 0.21 protein_coding missense_variant MODERATE 740A>T His247Leu
M0004231 ICJMGBNG_00028 35454 3 Skin 0.21 protein_coding missense_variant MODERATE 737A>C Glu246Ala
M0004232 ICJMGBNG_00028 35567 4 Skin 0.29 protein_coding synonymous_variant LOW 624A>G Ala208Ala
M0004233 ICJMGBNG_00028 35582 4 Skin 0.29 protein_coding synonymous_variant LOW 609T>C Tyr203Tyr
M0004234 ICJMGBNG_00028 35626 4 Skin 0.29 protein_coding missense_variant MODERATE 565T>G Ser189Ala
M0004235 ICJMGBNG_00027 33487 6 Skin 0.43 protein_coding synonymous_variant LOW 1371T>A Thr457Thr
M0004236 ICJMGBNG_00027 33529 6 Skin 0.43 protein_coding synonymous_variant LOW 1329C>G Leu443Leu
M0004237 ICJMGBNG_00027 33532 6 Skin 0.43 protein_coding synonymous_variant LOW 1326T>C Asn442Asn
M0004238 ICJMGBNG_00027 33550 6 Skin 0.43 protein_coding synonymous_variant LOW 1308T>C Arg436Arg
M0004239 ICJMGBNG_00027 33589 4 Skin 0.29 protein_coding synonymous_variant LOW 1269G>C Thr423Thr
M0004240 ICJMGBNG_00027 33592 4 Skin 0.29 protein_coding synonymous_variant LOW 1266C>G Leu422Leu
M0004241 ICJMGBNG_00027 33594 4 Skin 0.29 protein_coding missense_variant MODERATE 1264C>T Leu422Phe
M0004242 ICJMGBNG_00027 33598 6 Skin 0.43 protein_coding synonymous_variant LOW 1260T>C Asp420Asp
M0004243 ICJMGBNG_00027 33627 5 Skin 0.36 protein_coding missense_variant MODERATE 1231G>T Val411Phe
M0004244 ICJMGBNG_00027 33664 6 Skin 0.43 protein_coding synonymous_variant LOW 1194T>C Tyr398Tyr
M0004245 ICJMGBNG_00027 33673 4 Skin 0.29 protein_coding synonymous_variant LOW 1185T>C Val395Val
M0004246 ICJMGBNG_00027 33895 5 Skin 0.36 protein_coding synonymous_variant LOW 963G>A Glu321Glu
M0004247 ICJMGBNG_00029 36359 4 Skin 0.29 protein_coding synonymous_variant LOW 393T>C Asn131Asn
M0004248 ICJMGBNG_00029 36375 4 Skin 0.29 protein_coding missense_variant MODERATE 377C>G Ala126Gly
M0004249 ICJMGBNG_00029 36386 4 Skin 0.29 protein_coding synonymous_variant LOW 366G>C Val122Val
M0004250 ICJMGBNG_00029 36392 4 Skin 0.29 protein_coding synonymous_variant LOW 360A>C Ala120Ala
M0004251 ICJMGBNG_00029 36482 3 Skin 0.21 protein_coding synonymous_variant LOW 270A>C Pro90Pro
M0004252 ICJMGBNG_00026 36832 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4217A>G None
M0004253 ICJMGBNG_00030 36997 4 Skin 0.29 protein_coding missense_variant MODERATE 165T>G Asp55Glu
M0004254 ICJMGBNG_00030 37015 3 Skin 0.21 protein_coding synonymous_variant LOW 183G>C Thr61Thr
M0004255 ICJMGBNG_00030 37283 3 Skin 0.21 protein_coding missense_variant MODERATE 451A>G Thr151Ala
M0004256 ICJMGBNG_00030 37357 3 Skin 0.21 protein_coding synonymous_variant LOW 525G>C Arg175Arg
M0004257 ICJMGBNG_00026 37475 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4860C>G None
M0004258 ICJMGBNG_00026 37501 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4886A>G None
M0004259 ICJMGBNG_00025 31285 3 Skin 0.21 protein_coding synonymous_variant LOW 393T>C Gly131Gly
M0004260 ICJMGBNG_00025 31323 3 Skin 0.21 protein_coding missense_variant MODERATE 355T>C Ser119Pro
M0004261 ICJMGBNG_00025 31637 4 Skin 0.29 protein_coding missense_variant MODERATE 41T>C Val14Ala
M0004262 ICJMGBNG_00026 31737 4 Skin 0.29 protein_coding synonymous_variant LOW 879T>C Phe293Phe
M0004263 ICJMGBNG_00026 31800 3 Skin 0.21 protein_coding synonymous_variant LOW 816G>A Val272Val
M0004264 ICJMGBNG_00026 31806 4 Skin 0.29 protein_coding synonymous_variant LOW 810C>T Arg270Arg
M0004265 ICJMGBNG_00026 31863 4 Skin 0.29 protein_coding synonymous_variant LOW 753A>G Ala251Ala
M0004266 ICJMGBNG_00026 31878 4 Skin 0.29 protein_coding synonymous_variant LOW 738C>T Asp246Asp
M0004267 ICJMGBNG_00026 31923 4 Skin 0.29 protein_coding synonymous_variant LOW 693C>G Thr231Thr
M0004268 ICJMGBNG_00026 31949 4 Skin 0.29 protein_coding missense_variant MODERATE 667G>T Ala223Ser
M0004269 ICJMGBNG_00026 31950 4 Skin 0.29 protein_coding synonymous_variant LOW 666C>T Ala222Ala
M0004270 ICJMGBNG_00026 31977 4 Skin 0.29 protein_coding synonymous_variant LOW 639C>G Thr213Thr
M0004271 ICJMGBNG_00026 31989 4 Skin 0.29 protein_coding synonymous_variant LOW 627T>G Pro209Pro
M0004272 ICJMGBNG_00026 31992 4 Skin 0.29 protein_coding synonymous_variant LOW 624C>G Arg208Arg
M0004273 ICJMGBNG_00026 31995 4 Skin 0.29 protein_coding synonymous_variant LOW 621A>C Ala207Ala
M0004274 ICJMGBNG_00026 32028 4 Skin 0.29 protein_coding synonymous_variant LOW 588G>A Thr196Thr
M0004275 ICJMGBNG_00026 32104 4 Skin 0.29 protein_coding missense_variant MODERATE 512T>C Leu171Pro
M0004276 ICJMGBNG_00026 32105 4 Skin 0.29 protein_coding missense_variant MODERATE 511C>A Leu171Met
M0004277 ICJMGBNG_00026 32113 4 Skin 0.29 protein_coding missense_variant MODERATE 503T>C Val168Ala
M0004278 ICJMGBNG_00026 32184 4 Skin 0.29 protein_coding synonymous_variant LOW 432C>A Arg144Arg
M0004279 ICJMGBNG_00026 32415 4 Skin 0.29 protein_coding synonymous_variant LOW 201T>G Leu67Leu
M0004280 ICJMGBNG_00026 32516 4 Skin 0.29 protein_coding missense_variant MODERATE 100G>T Ala34Ser
M0004281 ICJMGBNG_00027 32797 5 Skin 0.36 protein_coding synonymous_variant LOW 2061C>G Arg687Arg
M0004282 ICJMGBNG_00027 32798 5 Skin 0.36 protein_coding missense_variant MODERATE 2060G>C Arg687Pro
M0004283 ICJMGBNG_00027 32818 3 Skin 0.21 protein_coding synonymous_variant LOW 2040T>A Arg680Arg
M0004284 ICJMGBNG_00027 32868 5 Skin 0.36 protein_coding missense_variant MODERATE 1990A>C Ser664Arg
M0004285 ICJMGBNG_00027 32977 5 Skin 0.36 protein_coding missense_variant MODERATE 1881G>C Gln627His
M0004286 ICJMGBNG_00027 32978 5 Skin 0.36 protein_coding missense_variant MODERATE 1880A>G Gln627Arg
M0004287 ICJMGBNG_00027 32980 5 Skin 0.36 protein_coding synonymous_variant LOW 1878C>G Gly626Gly
M0004288 ICJMGBNG_00027 33046 5 Skin 0.36 protein_coding synonymous_variant LOW 1812G>C Ala604Ala
M0004289 ICJMGBNG_00027 33208 5 Skin 0.36 protein_coding synonymous_variant LOW 1650C>T Asn550Asn
M0004290 ICJMGBNG_00027 33391 5 Skin 0.36 protein_coding synonymous_variant LOW 1467T>C Ala489Ala
M0004291 ICJMGBNG_00027 33412 5 Skin 0.36 protein_coding synonymous_variant LOW 1446T>G Ala482Ala
M0004292 ICJMGBNG_00027 33418 3 Skin 0.21 protein_coding synonymous_variant LOW 1440C>T Phe480Phe
M0004293 ICJMGBNG_00027 33421 3 Skin 0.21 protein_coding synonymous_variant LOW 1437T>C Gly479Gly
M0004294 ICJMGBNG_00027 33775 5 Skin 0.36 protein_coding synonymous_variant LOW 1083C>G Val361Val
M0004295 ICJMGBNG_00027 34159 5 Skin 0.36 protein_coding synonymous_variant LOW 699C>T Asp233Asp
M0004296 ICJMGBNG_00001 197 3 Skin 0.21 protein_coding synonymous_variant LOW 1699C>T Leu567Leu
M0004297 ICJMGBNG_00001 348 4 Skin 0.29 protein_coding synonymous_variant LOW 1548C>G Gly516Gly
M0004298 ICJMGBNG_00005 5617 3 Skin 0.21 protein_coding synonymous_variant LOW 337C>T Leu113Leu
M0004299 ICJMGBNG_00005 5624 3 Skin 0.21 protein_coding synonymous_variant LOW 330G>C Val110Val
M0004300 ICJMGBNG_00002 7039 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3526C>A None
M0004301 ICJMGBNG_00002 8313 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4800G>A None
M0004302 ICJMGBNG_00026 31974 3 Skin 0.21 protein_coding synonymous_variant LOW 642C>A Gly214Gly
M0004303 ICJMGBNG_00026 31986 3 Skin 0.21 protein_coding synonymous_variant LOW 630C>T Gly210Gly
M0004304 ICJMGBNG_00021 32619 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4862T>C None
M0004305 ICJMGBNG_00027 32638 3 Skin 0.21 protein_coding synonymous_variant LOW 2220A>G Gln740Gln
M0004306 ICJMGBNG_00027 33216 3 Skin 0.21 protein_coding missense_variant MODERATE 1642A>G Thr548Ala
M0004307 ICJMGBNG_00027 34111 3 Skin 0.21 protein_coding synonymous_variant LOW 747C>T Ser249Ser
M0004308 ICJMGBNG_00002 3235 3 Skin 0.21 protein_coding synonymous_variant LOW 279C>T Asp93Asp
M0004309 ICJMGBNG_00009 10031 4 Skin 0.29 protein_coding missense_variant MODERATE 685G>A Gly229Ser
M0004310 ICJMGBNG_00009 10032 4 Skin 0.29 protein_coding missense_variant MODERATE 686G>C Gly229Ala
M0004311 ICJMGBNG_00009 10048 4 Skin 0.29 protein_coding synonymous_variant LOW 702G>C Leu234Leu
M0004312 ICJMGBNG_00009 10058 4 Skin 0.29 protein_coding missense_variant MODERATE 712A>C Met238Leu
M0004313 ICJMGBNG_00009 10078 4 Skin 0.29 protein_coding synonymous_variant LOW 732C>T Ile244Ile
M0004314 ICJMGBNG_00009 10087 4 Skin 0.29 protein_coding synonymous_variant LOW 741G>A Ala247Ala
M0004315 ICJMGBNG_00009 10090 4 Skin 0.29 protein_coding synonymous_variant LOW 744C>G Gly248Gly
M0004316 ICJMGBNG_00009 10117 4 Skin 0.29 protein_coding missense_variant MODERATE 771T>G Asp257Glu
M0004317 ICJMGBNG_00009 10129 4 Skin 0.29 protein_coding missense_variant MODERATE 783G>C Glu261Asp
M0004318 ICJMGBNG_00009 10135 4 Skin 0.29 protein_coding synonymous_variant LOW 789C>T His263His
M0004319 ICJMGBNG_00009 10138 4 Skin 0.29 protein_coding synonymous_variant LOW 792A>G Ala264Ala
M0004320 ICJMGBNG_00009 10145 4 Skin 0.29 protein_coding missense_variant MODERATE 799C>T Arg267Cys
M0004321 ICJMGBNG_00009 10246 4 Skin 0.29 protein_coding synonymous_variant LOW 900T>C Ala300Ala
M0004322 ICJMGBNG_00009 10382 4 Skin 0.29 protein_coding synonymous_variant LOW 1036A>C Arg346Arg
M0004323 ICJMGBNG_00009 10398 4 Skin 0.29 protein_coding missense_variant MODERATE 1052T>C Ile351Thr
M0004324 ICJMGBNG_00005 10420 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -4467A>G None
M0004325 ICJMGBNG_00010 10784 4 Skin 0.29 protein_coding synonymous_variant LOW 312A>G Ala104Ala
M0004326 ICJMGBNG_00010 10847 4 Skin 0.29 protein_coding synonymous_variant LOW 375T>G Ser125Ser
M0004327 ICJMGBNG_00010 10973 3 Skin 0.21 protein_coding synonymous_variant LOW 501C>T Asp167Asp
M0004328 ICJMGBNG_00011 11373 3 Skin 0.21 protein_coding synonymous_variant LOW 363G>C Gly121Gly
M0004329 ICJMGBNG_00011 11379 3 Skin 0.21 protein_coding synonymous_variant LOW 357C>T Ile119Ile
M0004330 ICJMGBNG_00011 11493 3 Skin 0.21 protein_coding synonymous_variant LOW 243C>A Arg81Arg
M0004331 ICJMGBNG_00011 11636 3 Skin 0.21 protein_coding missense_variant MODERATE 100T>C Tyr34His
M0004332 ICJMGBNG_00011 11660 3 Skin 0.21 protein_coding missense_variant MODERATE 76G>T Val26Leu
M0004333 ICJMGBNG_00012 11830 3 Skin 0.21 protein_coding synonymous_variant LOW 285T>C Ser95Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term