Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1529
  Reference Plasmid   1111525849478674_bin.7__k141_231103
  Reference Plasmid Size   35368
  Reference Plasmid GC Content   0.67
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0005561 NLFMFFNJ_00008 14696 6 Skin 0.38 protein_coding synonymous_variant LOW 567C>A Ala189Ala
M0005562 NLFMFFNJ_00008 14702 6 Skin 0.38 protein_coding synonymous_variant LOW 561T>C Val187Val
M0005563 NLFMFFNJ_00008 14837 6 Skin 0.38 protein_coding synonymous_variant LOW 426T>C His142His
M0005564 NLFMFFNJ_00008 15133 3 Skin 0.19 protein_coding missense_variant MODERATE 130A>C Ile44Leu
M0005565 NLFMFFNJ_00008 15209 6 Skin 0.38 protein_coding synonymous_variant LOW 54C>G Ala18Ala
M0005566 NLFMFFNJ_00008 15246 6 Skin 0.38 protein_coding missense_variant MODERATE 17A>G Gln6Arg
M0005567 NLFMFFNJ_00007 15446 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -1586C>T None
M0005568 NLFMFFNJ_00009 15547 3 Skin 0.19 protein_coding missense_variant MODERATE 38C>T Ala13Val
M0005569 NLFMFFNJ_00009 15581 4 Skin 0.25 protein_coding synonymous_variant LOW 72G>A Glu24Glu
M0005570 NLFMFFNJ_00009 15749 3 Skin 0.19 protein_coding synonymous_variant LOW 240G>C Gly80Gly
M0005571 NLFMFFNJ_00009 15753 6 Skin 0.38 protein_coding missense_variant MODERATE 244G>C Val82Leu
M0005572 NLFMFFNJ_00009 15761 6 Skin 0.38 protein_coding synonymous_variant LOW 252T>C Asp84Asp
M0005573 NLFMFFNJ_00009 15764 6 Skin 0.38 protein_coding synonymous_variant LOW 255A>G Glu85Glu
M0005574 NLFMFFNJ_00009 15893 6 Skin 0.38 protein_coding synonymous_variant LOW 384C>T Ser128Ser
M0005575 NLFMFFNJ_00009 15954 3 Skin 0.19 protein_coding missense_variant MODERATE 445G>C Ala149Pro
M0005576 NLFMFFNJ_00009 15955 3 Skin 0.19 protein_coding missense_variant MODERATE 446C>A Ala149Glu
M0005577 NLFMFFNJ_00009 15959 3 Skin 0.19 protein_coding synonymous_variant LOW 450T>G Pro150Pro
M0005578 NLFMFFNJ_00009 15971 4 Skin 0.25 protein_coding synonymous_variant LOW 462G>A Glu154Glu
M0005579 NLFMFFNJ_00009 15977 3 Skin 0.19 protein_coding synonymous_variant LOW 468C>T Asp156Asp
M0005580 NLFMFFNJ_00009 15998 3 Skin 0.19 protein_coding synonymous_variant LOW 489G>A Glu163Glu
M0005581 NLFMFFNJ_00009 16004 4 Skin 0.25 protein_coding synonymous_variant LOW 495C>T Val165Val
M0005582 NLFMFFNJ_00009 16080 6 Skin 0.38 protein_coding missense_variant MODERATE 571G>A Val191Ile
M0005583 NLFMFFNJ_00009 16095 6 Skin 0.38 protein_coding missense_variant MODERATE 586G>C Ala196Pro
M0005584 NLFMFFNJ_00009 16097 4 Skin 0.25 protein_coding synonymous_variant LOW 588C>G Ala196Ala
M0005585 NLFMFFNJ_00009 16169 5 Skin 0.31 protein_coding synonymous_variant LOW 660T>G Pro220Pro
M0005586 NLFMFFNJ_00009 16240 6 Skin 0.38 protein_coding missense_variant MODERATE 731G>A Gly244Asp
M0005587 NLFMFFNJ_00009 16244 6 Skin 0.38 protein_coding synonymous_variant LOW 735T>C Ile245Ile
M0005588 NLFMFFNJ_00007 16297 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -2437C>G None
M0005589 NLFMFFNJ_00010 16323 6 Skin 0.38 protein_coding synonymous_variant LOW 729G>C Gly243Gly
M0005590 NLFMFFNJ_00010 16347 6 Skin 0.38 protein_coding synonymous_variant LOW 705A>C Arg235Arg
M0005591 NLFMFFNJ_00010 16380 6 Skin 0.38 protein_coding synonymous_variant LOW 672G>C Pro224Pro
M0005592 NLFMFFNJ_00010 16538 5 Skin 0.31 protein_coding missense_variant MODERATE 514A>G Thr172Ala
M0005593 NLFMFFNJ_00010 16854 5 Skin 0.31 protein_coding synonymous_variant LOW 198G>A Ala66Ala
M0005594 NLFMFFNJ_00010 17031 3 Skin 0.19 protein_coding synonymous_variant LOW 21A>C Ser7Ser
M0005595 NLFMFFNJ_00011 17132 7 Skin 0.44 protein_coding synonymous_variant LOW 762G>C Ala254Ala
M0005596 NLFMFFNJ_00011 17174 3 Skin 0.19 protein_coding synonymous_variant LOW 720C>T Gly240Gly
M0005597 NLFMFFNJ_00011 17207 4 Skin 0.25 protein_coding synonymous_variant LOW 687C>T Arg229Arg
M0005598 NLFMFFNJ_00011 17240 7 Skin 0.44 protein_coding synonymous_variant LOW 654A>G Ala218Ala
M0005599 NLFMFFNJ_00011 17270 6 Skin 0.38 protein_coding synonymous_variant LOW 624C>G Pro208Pro
M0005600 NLFMFFNJ_00011 17273 6 Skin 0.38 protein_coding synonymous_variant LOW 621T>C Asp207Asp
M0005601 NLFMFFNJ_00011 17303 7 Skin 0.44 protein_coding synonymous_variant LOW 591C>T Tyr197Tyr
M0005602 NLFMFFNJ_00011 17399 7 Skin 0.44 protein_coding synonymous_variant LOW 495A>G Lys165Lys
M0005603 NLFMFFNJ_00023 29948 5 Skin 0.31 protein_coding synonymous_variant LOW 954G>A Glu318Glu
M0005604 NLFMFFNJ_00023 30029 5 Skin 0.31 protein_coding synonymous_variant LOW 873C>A Ala291Ala
M0005605 NLFMFFNJ_00023 30080 5 Skin 0.31 protein_coding synonymous_variant LOW 822T>G Gly274Gly
M0005606 NLFMFFNJ_00023 30101 5 Skin 0.31 protein_coding synonymous_variant LOW 801C>T Ser267Ser
M0005607 NLFMFFNJ_00023 30137 5 Skin 0.31 protein_coding synonymous_variant LOW 765T>G Leu255Leu
M0005608 NLFMFFNJ_00023 30191 5 Skin 0.31 protein_coding synonymous_variant LOW 711G>C Val237Val
M0005609 NLFMFFNJ_00023 30194 5 Skin 0.31 protein_coding synonymous_variant LOW 708A>G Glu236Glu
M0005610 NLFMFFNJ_00023 30209 5 Skin 0.31 protein_coding synonymous_variant LOW 693T>C Thr231Thr
M0005611 NLFMFFNJ_00023 30242 5 Skin 0.31 protein_coding synonymous_variant LOW 660T>G Ser220Ser
M0005612 NLFMFFNJ_00023 30251 5 Skin 0.31 protein_coding synonymous_variant LOW 651G>C Leu217Leu
M0005613 NLFMFFNJ_00023 30398 5 Skin 0.31 protein_coding synonymous_variant LOW 504T>C Phe168Phe
M0005614 NLFMFFNJ_00023 30401 5 Skin 0.31 protein_coding synonymous_variant LOW 501G>C Ala167Ala
M0005615 NLFMFFNJ_00023 30428 4 Skin 0.25 protein_coding synonymous_variant LOW 474C>A Ala158Ala
M0005616 NLFMFFNJ_00023 30431 5 Skin 0.31 protein_coding synonymous_variant LOW 471T>G Ala157Ala
M0005617 NLFMFFNJ_00023 30578 4 Skin 0.25 protein_coding synonymous_variant LOW 324G>C Pro108Pro
M0005618 NLFMFFNJ_00023 30623 5 Skin 0.31 protein_coding synonymous_variant LOW 279T>C Arg93Arg
M0005619 NLFMFFNJ_00023 30712 6 Skin 0.38 protein_coding missense_variant MODERATE 190A>T Asn64Tyr
M0005620 NLFMFFNJ_00021 31984 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4186C>T None
M0005621 NLFMFFNJ_00025 32079 6 Skin 0.38 protein_coding synonymous_variant LOW 12T>A Ile4Ile
M0005622 NLFMFFNJ_00025 32151 6 Skin 0.38 protein_coding synonymous_variant LOW 84T>C His28His
M0005623 NLFMFFNJ_00025 32181 6 Skin 0.38 protein_coding synonymous_variant LOW 114G>C Val38Val
M0005624 NLFMFFNJ_00025 32217 4 Skin 0.25 protein_coding synonymous_variant LOW 150C>A Ile50Ile
M0005625 NLFMFFNJ_00025 32259 6 Skin 0.38 protein_coding synonymous_variant LOW 192A>C Arg64Arg
M0005626 NLFMFFNJ_00025 32283 5 Skin 0.31 protein_coding synonymous_variant LOW 216C>G Gly72Gly
M0005627 NLFMFFNJ_00025 32367 6 Skin 0.38 protein_coding synonymous_variant LOW 300G>A Thr100Thr
M0005628 NLFMFFNJ_00025 32574 5 Skin 0.31 protein_coding synonymous_variant LOW 507G>A Glu169Glu
M0005629 NLFMFFNJ_00025 32843 6 Skin 0.38 protein_coding missense_variant MODERATE 776G>A Gly259Glu
M0005630 NLFMFFNJ_00025 32904 4 Skin 0.25 protein_coding synonymous_variant LOW 837G>C Pro279Pro
M0005631 NLFMFFNJ_00026 33176 6 Skin 0.38 protein_coding missense_variant MODERATE 1190G>A Gly397Asp
M0005632 NLFMFFNJ_00026 33262 6 Skin 0.38 protein_coding synonymous_variant LOW 1104T>C Gly368Gly
M0005633 NLFMFFNJ_00026 33536 4 Skin 0.25 protein_coding missense_variant MODERATE 830G>A Ser277Asn
M0005634 NLFMFFNJ_00026 33547 7 Skin 0.44 protein_coding synonymous_variant LOW 819C>T Arg273Arg
M0005635 NLFMFFNJ_00026 33577 7 Skin 0.44 protein_coding synonymous_variant LOW 789T>C Ala263Ala
M0005636 NLFMFFNJ_00026 33880 4 Skin 0.25 protein_coding synonymous_variant LOW 486C>A Gly162Gly
M0005637 NLFMFFNJ_00026 33916 4 Skin 0.25 protein_coding synonymous_variant LOW 450G>A Ala150Ala
M0005638 NLFMFFNJ_00026 33932 7 Skin 0.44 protein_coding missense_variant MODERATE 434T>G Val145Gly
M0005639 NLFMFFNJ_00026 34201 3 Skin 0.19 protein_coding synonymous_variant LOW 165A>C Ala55Ala
M0005640 NLFMFFNJ_00026 34214 6 Skin 0.38 protein_coding missense_variant MODERATE 152G>C Arg51Pro
M0005641 NLFMFFNJ_00026 34354 4 Skin 0.25 protein_coding synonymous_variant LOW 12A>C Ala4Ala
M0005642 NLFMFFNJ_00027 34628 7 Skin 0.44 protein_coding missense_variant MODERATE 733G>C Ala245Pro
M0005643 NLFMFFNJ_00027 34833 7 Skin 0.44 protein_coding synonymous_variant LOW 528G>T Ser176Ser
M0005644 NLFMFFNJ_00027 34850 6 Skin 0.38 protein_coding missense_variant MODERATE 511G>A Ala171Thr
M0005645 NLFMFFNJ_00007 13696 3 Skin 0.19 protein_coding synonymous_variant LOW 165A>G Glu55Glu
M0005646 NLFMFFNJ_00007 13831 5 Skin 0.31 protein_coding synonymous_variant LOW 30A>C Ala10Ala
M0005647 NLFMFFNJ_00008 14141 3 Skin 0.19 protein_coding synonymous_variant LOW 1122A>C Gly374Gly
M0005648 NLFMFFNJ_00008 14360 5 Skin 0.31 protein_coding synonymous_variant LOW 903G>A Val301Val
M0005649 NLFMFFNJ_00008 14366 5 Skin 0.31 protein_coding synonymous_variant LOW 897T>C Tyr299Tyr
M0005650 NLFMFFNJ_00008 14402 5 Skin 0.31 protein_coding synonymous_variant LOW 861G>C Ala287Ala
M0005651 NLFMFFNJ_00008 14719 3 Skin 0.19 protein_coding synonymous_variant LOW 544T>C Leu182Leu
M0005652 NLFMFFNJ_00009 16091 3 Skin 0.19 protein_coding synonymous_variant LOW 582C>G Ala194Ala
M0005653 NLFMFFNJ_00007 16310 4 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -2450T>C None
M0005654 NLFMFFNJ_00010 16446 3 Skin 0.19 protein_coding synonymous_variant LOW 606A>G Glu202Glu
M0005655 NLFMFFNJ_00011 17211 3 Skin 0.19 protein_coding missense_variant MODERATE 683A>G Asn228Ser
M0005656 NLFMFFNJ_00011 17237 4 Skin 0.25 protein_coding synonymous_variant LOW 657C>T Pro219Pro
M0005657 NLFMFFNJ_00011 17597 5 Skin 0.31 protein_coding synonymous_variant LOW 297T>C Ala99Ala
M0005658 NLFMFFNJ_00011 17620 6 Skin 0.38 protein_coding missense_variant MODERATE 274A>C Ser92Arg
M0005659 NLFMFFNJ_00011 17642 6 Skin 0.38 protein_coding synonymous_variant LOW 252C>G Leu84Leu
M0005660 NLFMFFNJ_00011 17657 6 Skin 0.38 protein_coding synonymous_variant LOW 237G>A Ala79Ala
M0005661 NLFMFFNJ_00011 17669 6 Skin 0.38 protein_coding synonymous_variant LOW 225C>T His75His
M0005662 NLFMFFNJ_00011 17733 5 Skin 0.31 protein_coding missense_variant MODERATE 161G>C Gly54Ala
M0005663 NLFMFFNJ_00011 17750 5 Skin 0.31 protein_coding synonymous_variant LOW 144T>G Ser48Ser
M0005664 NLFMFFNJ_00007 17991 4 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4131G>A None
M0005665 NLFMFFNJ_00007 18017 4 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4157C>A None
M0005666 NLFMFFNJ_00012 18164 6 Skin 0.38 protein_coding synonymous_variant LOW 1596A>G Ala532Ala
M0005667 NLFMFFNJ_00012 18511 6 Skin 0.38 protein_coding missense_variant MODERATE 1249A>G Thr417Ala
M0005668 NLFMFFNJ_00012 18716 3 Skin 0.19 protein_coding synonymous_variant LOW 1044C>T Asp348Asp
M0005669 NLFMFFNJ_00012 18725 3 Skin 0.19 protein_coding synonymous_variant LOW 1035T>A Arg345Arg
M0005670 NLFMFFNJ_00012 19062 5 Skin 0.31 protein_coding missense_variant MODERATE 698A>G Asn233Ser
M0005671 NLFMFFNJ_00012 19081 5 Skin 0.31 protein_coding missense_variant MODERATE 679G>A Ala227Thr
M0005672 NLFMFFNJ_00012 19265 6 Skin 0.38 protein_coding synonymous_variant LOW 495G>A Thr165Thr
M0005673 NLFMFFNJ_00012 19303 6 Skin 0.38 protein_coding synonymous_variant LOW 457C>T Leu153Leu
M0005674 NLFMFFNJ_00013 20098 6 Skin 0.38 protein_coding missense_variant MODERATE 163G>A Val55Ile
M0005675 NLFMFFNJ_00013 20118 6 Skin 0.38 protein_coding synonymous_variant LOW 183C>T His61His
M0005676 NLFMFFNJ_00013 20127 6 Skin 0.38 protein_coding synonymous_variant LOW 192G>A Pro64Pro
M0005677 NLFMFFNJ_00013 20859 6 Skin 0.38 protein_coding synonymous_variant LOW 924C>T Ile308Ile
M0005678 NLFMFFNJ_00014 21012 6 Skin 0.38 protein_coding synonymous_variant LOW 27C>T Phe9Phe
M0005679 NLFMFFNJ_00014 21216 6 Skin 0.38 protein_coding synonymous_variant LOW 231T>C Leu77Leu
M0005680 NLFMFFNJ_00014 21339 5 Skin 0.31 protein_coding synonymous_variant LOW 354T>C Arg118Arg
M0005681 NLFMFFNJ_00015 21810 6 Skin 0.38 protein_coding synonymous_variant LOW 147G>T Pro49Pro
M0005682 NLFMFFNJ_00015 21843 6 Skin 0.38 protein_coding synonymous_variant LOW 180T>C Phe60Phe
M0005683 NLFMFFNJ_00015 21853 3 Skin 0.19 protein_coding synonymous_variant LOW 190C>T Leu64Leu
M0005684 NLFMFFNJ_00015 21870 6 Skin 0.38 protein_coding synonymous_variant LOW 207T>C Arg69Arg
M0005685 NLFMFFNJ_00015 22005 6 Skin 0.38 protein_coding synonymous_variant LOW 342T>C Pro114Pro
M0005686 NLFMFFNJ_00015 22017 6 Skin 0.38 protein_coding synonymous_variant LOW 354T>C Arg118Arg
M0005687 NLFMFFNJ_00015 22090 5 Skin 0.31 protein_coding missense_variant MODERATE 427G>T Ala143Ser
M0005688 NLFMFFNJ_00015 22267 4 Skin 0.25 protein_coding synonymous_variant LOW 604T>C Leu202Leu
M0005689 NLFMFFNJ_00015 22356 4 Skin 0.25 protein_coding synonymous_variant LOW 693A>C Gly231Gly
M0005690 NLFMFFNJ_00015 22404 4 Skin 0.25 protein_coding synonymous_variant LOW 741G>A Glu247Glu
M0005691 NLFMFFNJ_00015 22419 5 Skin 0.31 protein_coding synonymous_variant LOW 756A>G Glu252Glu
M0005692 NLFMFFNJ_00015 22479 6 Skin 0.38 protein_coding synonymous_variant LOW 816T>C Cys272Cys
M0005693 NLFMFFNJ_00015 22513 4 Skin 0.25 protein_coding synonymous_variant LOW 850C>T Leu284Leu
M0005694 NLFMFFNJ_00015 22701 3 Skin 0.19 protein_coding synonymous_variant LOW 1038G>A Val346Val
M0005695 NLFMFFNJ_00011 22860 4 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4967A>C None
M0005696 NLFMFFNJ_00016 23021 6 Skin 0.38 protein_coding missense_variant MODERATE 116T>C Val39Ala
M0005697 NLFMFFNJ_00016 23187 6 Skin 0.38 protein_coding missense_variant MODERATE 282C>G His94Gln
M0005698 NLFMFFNJ_00012 23336 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3577G>T None
M0005699 NLFMFFNJ_00012 23344 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3585A>G None
M0005700 NLFMFFNJ_00012 23455 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3696G>A None
M0005701 NLFMFFNJ_00017 23794 6 Skin 0.38 protein_coding synonymous_variant LOW 276C>G Ala92Ala
M0005702 NLFMFFNJ_00017 23944 6 Skin 0.38 protein_coding synonymous_variant LOW 426A>G Glu142Glu
M0005703 NLFMFFNJ_00017 24094 5 Skin 0.31 protein_coding synonymous_variant LOW 576T>C Ile192Ile
M0005704 NLFMFFNJ_00017 24115 5 Skin 0.31 protein_coding synonymous_variant LOW 597T>C Ala199Ala
M0005705 NLFMFFNJ_00017 24298 6 Skin 0.38 protein_coding synonymous_variant LOW 780A>G Val260Val
M0005706 NLFMFFNJ_00012 24448 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4689C>T None
M0005707 NLFMFFNJ_00012 24466 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4707T>C None
M0005708 NLFMFFNJ_00012 24500 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4741G>A None
M0005709 NLFMFFNJ_00012 24576 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4817C>A None
M0005710 NLFMFFNJ_00012 24623 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4864T>G None
M0005711 NLFMFFNJ_00018 24722 3 Skin 0.19 protein_coding synonymous_variant LOW 37C>T Leu13Leu
M0005712 NLFMFFNJ_00018 24877 4 Skin 0.25 protein_coding synonymous_variant LOW 192C>G Ala64Ala
M0005713 NLFMFFNJ_00018 24913 3 Skin 0.19 protein_coding synonymous_variant LOW 228T>C Phe76Phe
M0005714 NLFMFFNJ_00018 24986 5 Skin 0.31 protein_coding missense_variant MODERATE 301G>A Val101Met
M0005715 NLFMFFNJ_00019 25057 4 Skin 0.25 protein_coding synonymous_variant LOW 49C>T Leu17Leu
M0005716 NLFMFFNJ_00019 25281 3 Skin 0.19 protein_coding synonymous_variant LOW 273G>C Ala91Ala
M0005717 NLFMFFNJ_00019 25452 5 Skin 0.31 protein_coding synonymous_variant LOW 444A>C Arg148Arg
M0005718 NLFMFFNJ_00019 25512 3 Skin 0.19 protein_coding synonymous_variant LOW 504G>C Thr168Thr
M0005719 NLFMFFNJ_00019 25725 5 Skin 0.31 protein_coding synonymous_variant LOW 717C>G Arg239Arg
M0005720 NLFMFFNJ_00019 25728 5 Skin 0.31 protein_coding synonymous_variant LOW 720T>C Gly240Gly
M0005721 NLFMFFNJ_00019 25731 5 Skin 0.31 protein_coding synonymous_variant LOW 723A>G Ala241Ala
M0005722 NLFMFFNJ_00019 25737 5 Skin 0.31 protein_coding synonymous_variant LOW 729G>T Gly243Gly
M0005723 NLFMFFNJ_00019 25758 5 Skin 0.31 protein_coding synonymous_variant LOW 750T>G Pro250Pro
M0005724 NLFMFFNJ_00019 25767 5 Skin 0.31 protein_coding synonymous_variant LOW 759T>C Arg253Arg
M0005725 NLFMFFNJ_00019 25772 5 Skin 0.31 protein_coding missense_variant MODERATE 764G>A Gly255Asp
M0005726 NLFMFFNJ_00019 25794 3 Skin 0.19 protein_coding synonymous_variant LOW 786C>T Ala262Ala
M0005727 NLFMFFNJ_00019 25806 5 Skin 0.31 protein_coding synonymous_variant LOW 798C>T Asp266Asp
M0005728 NLFMFFNJ_00019 25869 3 Skin 0.19 protein_coding synonymous_variant LOW 861C>G Thr287Thr
M0005729 NLFMFFNJ_00019 25996 5 Skin 0.31 protein_coding missense_variant MODERATE 988C>G Pro330Ala
M0005730 NLFMFFNJ_00019 26025 5 Skin 0.31 protein_coding synonymous_variant LOW 1017T>C Arg339Arg
M0005731 NLFMFFNJ_00019 26061 5 Skin 0.31 protein_coding synonymous_variant LOW 1053T>C Gly351Gly
M0005732 NLFMFFNJ_00019 26475 5 Skin 0.31 protein_coding synonymous_variant LOW 1467G>A Gln489Gln
M0005733 NLFMFFNJ_00020 26706 5 Skin 0.31 protein_coding missense_variant MODERATE 49A>G Ile17Val
M0005734 NLFMFFNJ_00020 26708 5 Skin 0.31 protein_coding synonymous_variant LOW 51T>C Ile17Ile
M0005735 NLFMFFNJ_00006 12332 4 Skin 0.25 protein_coding synonymous_variant LOW 435C>G Thr145Thr
M0005736 NLFMFFNJ_00006 12422 4 Skin 0.25 protein_coding synonymous_variant LOW 525G>C Ala175Ala
M0005737 NLFMFFNJ_00006 12465 4 Skin 0.25 protein_coding missense_variant MODERATE 568T>A Ser190Thr
M0005738 NLFMFFNJ_00006 12485 4 Skin 0.25 protein_coding synonymous_variant LOW 588T>C His196His
M0005739 NLFMFFNJ_00006 12524 4 Skin 0.25 protein_coding synonymous_variant LOW 627C>T His209His
M0005740 NLFMFFNJ_00006 12527 4 Skin 0.25 protein_coding synonymous_variant LOW 630G>C Ala210Ala
M0005741 NLFMFFNJ_00006 12536 4 Skin 0.25 protein_coding synonymous_variant LOW 639C>T Asn213Asn
M0005742 NLFMFFNJ_00006 12551 4 Skin 0.25 protein_coding synonymous_variant LOW 654T>C Arg218Arg
M0005743 NLFMFFNJ_00006 12620 4 Skin 0.25 protein_coding synonymous_variant LOW 723G>C Ala241Ala
M0005744 NLFMFFNJ_00006 12683 4 Skin 0.25 protein_coding synonymous_variant LOW 786C>G Ala262Ala
M0005745 NLFMFFNJ_00006 12854 4 Skin 0.25 protein_coding synonymous_variant LOW 957G>C Ala319Ala
M0005746 NLFMFFNJ_00006 13190 4 Skin 0.25 protein_coding synonymous_variant LOW 1293C>G Arg431Arg
M0005747 NLFMFFNJ_00006 13256 3 Skin 0.19 protein_coding missense_variant MODERATE 1359C>G Asp453Glu
M0005748 NLFMFFNJ_00008 14927 3 Skin 0.19 protein_coding synonymous_variant LOW 336G>A Ala112Ala
M0005749 NLFMFFNJ_00009 15870 3 Skin 0.19 protein_coding missense_variant MODERATE 361G>C Gly121Arg
M0005750 NLFMFFNJ_00014 21284 3 Skin 0.19 protein_coding missense_variant MODERATE 299G>T Gly100Val
M0005751 NLFMFFNJ_00015 21786 3 Skin 0.19 protein_coding synonymous_variant LOW 123C>T Asn41Asn
M0005752 NLFMFFNJ_00015 22080 3 Skin 0.19 protein_coding synonymous_variant LOW 417C>T Ala139Ala
M0005753 NLFMFFNJ_00012 24470 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4711C>G None
M0005754 NLFMFFNJ_00012 24509 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4750T>C None
M0005755 NLFMFFNJ_00012 24524 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4765G>T None
M0005756 NLFMFFNJ_00012 24552 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4793C>T None
M0005757 NLFMFFNJ_00019 25185 3 Skin 0.19 protein_coding synonymous_variant LOW 177T>C Asp59Asp
M0005758 NLFMFFNJ_00019 25191 3 Skin 0.19 protein_coding synonymous_variant LOW 183T>C Asp61Asp
M0005759 NLFMFFNJ_00019 25206 3 Skin 0.19 protein_coding synonymous_variant LOW 198A>G Ala66Ala
M0005760 NLFMFFNJ_00019 25210 3 Skin 0.19 protein_coding missense_variant MODERATE 202G>A Glu68Lys
M0005761 NLFMFFNJ_00019 25212 3 Skin 0.19 protein_coding missense_variant MODERATE 204G>C Glu68Asp
M0005762 NLFMFFNJ_00019 25605 3 Skin 0.19 protein_coding synonymous_variant LOW 597G>A Ala199Ala
M0005763 NLFMFFNJ_00019 25606 3 Skin 0.19 protein_coding synonymous_variant LOW 598C>T Leu200Leu
M0005764 NLFMFFNJ_00019 25638 3 Skin 0.19 protein_coding synonymous_variant LOW 630A>C Gly210Gly
M0005765 NLFMFFNJ_00020 26759 4 Skin 0.25 protein_coding synonymous_variant LOW 102A>G Ala34Ala
M0005766 NLFMFFNJ_00020 26802 3 Skin 0.19 protein_coding synonymous_variant LOW 145T>C Leu49Leu
M0005767 NLFMFFNJ_00020 26822 3 Skin 0.19 protein_coding synonymous_variant LOW 165C>T Pro55Pro
M0005768 NLFMFFNJ_00021 27199 4 Skin 0.25 protein_coding synonymous_variant LOW 600C>G Ala200Ala
M0005769 NLFMFFNJ_00021 27235 4 Skin 0.25 protein_coding synonymous_variant LOW 564G>C Pro188Pro
M0005770 NLFMFFNJ_00021 27317 4 Skin 0.25 protein_coding missense_variant MODERATE 482C>T Ala161Val
M0005771 NLFMFFNJ_00021 27339 4 Skin 0.25 protein_coding missense_variant MODERATE 460G>A Ala154Thr
M0005772 NLFMFFNJ_00021 27352 4 Skin 0.25 protein_coding synonymous_variant LOW 447G>A Gln149Gln
M0005773 NLFMFFNJ_00021 27355 4 Skin 0.25 protein_coding synonymous_variant LOW 444A>G Val148Val
M0005774 NLFMFFNJ_00021 27477 4 Skin 0.25 protein_coding missense_variant MODERATE 322G>T Ala108Ser
M0005775 NLFMFFNJ_00021 27520 3 Skin 0.19 protein_coding synonymous_variant LOW 279C>A Leu93Leu
M0005776 NLFMFFNJ_00021 27562 4 Skin 0.25 protein_coding synonymous_variant LOW 237A>C Ala79Ala
M0005777 NLFMFFNJ_00021 27817 4 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -19A>C None
M0005778 NLFMFFNJ_00021 27820 4 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -22A>C None
M0005779 NLFMFFNJ_00022 27850 4 Skin 0.25 protein_coding synonymous_variant LOW 1479C>G Val493Val
M0005780 NLFMFFNJ_00022 28015 4 Skin 0.25 protein_coding synonymous_variant LOW 1314G>A Ala438Ala
M0005781 NLFMFFNJ_00022 28021 4 Skin 0.25 protein_coding synonymous_variant LOW 1308C>T Asn436Asn
M0005782 NLFMFFNJ_00022 28117 4 Skin 0.25 protein_coding synonymous_variant LOW 1212T>C Gly404Gly
M0005783 NLFMFFNJ_00022 28156 4 Skin 0.25 protein_coding synonymous_variant LOW 1173A>C Ala391Ala
M0005784 NLFMFFNJ_00022 28567 3 Skin 0.19 protein_coding synonymous_variant LOW 762C>T His254His
M0005785 NLFMFFNJ_00022 28849 3 Skin 0.19 protein_coding synonymous_variant LOW 480G>A Val160Val
M0005786 NLFMFFNJ_00022 28897 4 Skin 0.25 protein_coding synonymous_variant LOW 432A>G Ala144Ala
M0005787 NLFMFFNJ_00022 28939 4 Skin 0.25 protein_coding synonymous_variant LOW 390C>T Phe130Phe
M0005788 NLFMFFNJ_00022 29020 4 Skin 0.25 protein_coding synonymous_variant LOW 309G>C Arg103Arg
M0005789 NLFMFFNJ_00022 29026 3 Skin 0.19 protein_coding synonymous_variant LOW 303G>C Leu101Leu
M0005790 NLFMFFNJ_00022 29155 4 Skin 0.25 protein_coding synonymous_variant LOW 174C>T Ala58Ala
M0005791 NLFMFFNJ_00022 29183 4 Skin 0.25 protein_coding missense_variant MODERATE 146T>C Leu49Pro
M0005792 NLFMFFNJ_00022 29227 4 Skin 0.25 protein_coding synonymous_variant LOW 102A>T Ala34Ala
M0005793 NLFMFFNJ_00022 29242 4 Skin 0.25 protein_coding synonymous_variant LOW 87G>T Thr29Thr
M0005794 NLFMFFNJ_00023 29408 4 Skin 0.25 protein_coding synonymous_variant LOW 1494G>A Leu498Leu
M0005795 NLFMFFNJ_00023 29711 3 Skin 0.19 protein_coding synonymous_variant LOW 1191T>G Pro397Pro
M0005796 NLFMFFNJ_00023 30232 4 Skin 0.25 protein_coding missense_variant MODERATE 670A>T Ser224Cys
M0005797 NLFMFFNJ_00012 19601 3 Skin 0.19 protein_coding synonymous_variant LOW 159G>A Thr53Thr
M0005798 NLFMFFNJ_00017 23611 4 Skin 0.25 protein_coding synonymous_variant LOW 93C>T Gly31Gly
M0005799 NLFMFFNJ_00018 24934 3 Skin 0.19 protein_coding synonymous_variant LOW 249C>T Arg83Arg
M0005800 NLFMFFNJ_00007 15460 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -1600C>G None
M0005801 NLFMFFNJ_00023 30812 4 Skin 0.25 protein_coding synonymous_variant LOW 90C>T Gly30Gly
M0005802 NLFMFFNJ_00021 30905 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -3107C>A None
M0005803 NLFMFFNJ_00021 30933 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -3135C>A None
M0005804 NLFMFFNJ_00024 30977 3 Skin 0.19 protein_coding synonymous_variant LOW 954G>C Val318Val
M0005805 NLFMFFNJ_00024 30986 3 Skin 0.19 protein_coding synonymous_variant LOW 945G>A Lys315Lys
M0005806 NLFMFFNJ_00024 30989 3 Skin 0.19 protein_coding synonymous_variant LOW 942G>A Gln314Gln
M0005807 NLFMFFNJ_00024 30992 3 Skin 0.19 protein_coding synonymous_variant LOW 939C>T Tyr313Tyr
M0005808 NLFMFFNJ_00024 31004 3 Skin 0.19 protein_coding synonymous_variant LOW 927G>C Val309Val
M0005809 NLFMFFNJ_00024 31010 3 Skin 0.19 protein_coding synonymous_variant LOW 921G>A Lys307Lys
M0005810 NLFMFFNJ_00024 31028 3 Skin 0.19 protein_coding synonymous_variant LOW 903C>T Asp301Asp
M0005811 NLFMFFNJ_00024 31049 3 Skin 0.19 protein_coding synonymous_variant LOW 882T>C Asp294Asp
M0005812 NLFMFFNJ_00024 31100 3 Skin 0.19 protein_coding synonymous_variant LOW 831T>C Phe277Phe
M0005813 NLFMFFNJ_00024 31154 3 Skin 0.19 protein_coding synonymous_variant LOW 777T>C Ile259Ile
M0005814 NLFMFFNJ_00026 33844 3 Skin 0.19 protein_coding synonymous_variant LOW 522A>G Val174Val
M0005815 NLFMFFNJ_00027 34402 4 Skin 0.25 protein_coding missense_variant MODERATE 959A>C Asp320Ala
M0005816 NLFMFFNJ_00026 33931 3 Skin 0.19 protein_coding synonymous_variant LOW 435C>T Val145Val
M0005817 NLFMFFNJ_00026 33934 3 Skin 0.19 protein_coding synonymous_variant LOW 432G>T Arg144Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term