Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1547
  Reference Plasmid   1111525849479830_bin.1_new__k141_323681
  Reference Plasmid Size   5528
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0007210 IAMJJOOB_00003 2223 15 Skin 0.50 protein_coding synonymous_variant LOW 222A>C Gly74Gly
M0007211 IAMJJOOB_00003 2229 15 Skin 0.50 protein_coding synonymous_variant LOW 228T>C Gly76Gly
M0007212 IAMJJOOB_00003 2289 18 Skin 0.60 protein_coding synonymous_variant LOW 288A>G Gln96Gln
M0007213 IAMJJOOB_00003 2449 6 Skin 0.20 protein_coding synonymous_variant LOW 448C>T Leu150Leu
M0007214 IAMJJOOB_00003 2454 6 Skin 0.20 protein_coding synonymous_variant LOW 453C>A Ile151Ile
M0007215 IAMJJOOB_00003 2457 9 Skin 0.30 protein_coding synonymous_variant LOW 456T>C Asn152Asn
M0007216 IAMJJOOB_00004 3219 7 Skin 0.23 protein_coding missense_variant MODERATE 95G>A Gly32Asp
M0007217 IAMJJOOB_00004 3397 20 Skin 0.67 protein_coding synonymous_variant LOW 273A>G Arg91Arg
M0007218 IAMJJOOB_00005 4162 5 Skin 0.17 protein_coding synonymous_variant LOW 147T>C Asn49Asn
M0007219 IAMJJOOB_00005 4309 23 Skin 0.77 protein_coding synonymous_variant LOW 294C>T Asp98Asp
M0007220 IAMJJOOB_00005 4649 9 Skin 0.30 protein_coding missense_variant MODERATE 634G>A Glu212Lys
M0007221 IAMJJOOB_00005 4696 17 Skin 0.57 protein_coding synonymous_variant LOW 681A>T Ala227Ala
M0007222 IAMJJOOB_00003 2655 7 Skin 0.23 protein_coding synonymous_variant LOW 654G>A Val218Val
M0007223 IAMJJOOB_00004 3319 16 Skin 0.53 protein_coding synonymous_variant LOW 195C>T Gly65Gly
M0007224 IAMJJOOB_00004 3439 20 Skin 0.67 protein_coding synonymous_variant LOW 315A>C Val105Val
M0007225 IAMJJOOB_00004 3643 13 Skin 0.43 protein_coding synonymous_variant LOW 519C>T Ile173Ile
M0007226 IAMJJOOB_00006 4989 12 Skin 0.40 protein_coding missense_variant MODERATE 14C>A Thr5Lys
M0007227 IAMJJOOB_00003 2598 11 Skin 0.37 protein_coding synonymous_variant LOW 597G>A Glu199Glu
M0007228 IAMJJOOB_00004 3757 15 Skin 0.50 protein_coding synonymous_variant LOW 633A>C Arg211Arg
M0007229 IAMJJOOB_00003 2739 8 Skin 0.27 protein_coding synonymous_variant LOW 738C>T Asn246Asn
M0007230 IAMJJOOB_00003 2775 8 Skin 0.27 protein_coding synonymous_variant LOW 774C>G Ala258Ala
M0007231 IAMJJOOB_00003 2796 8 Skin 0.27 protein_coding synonymous_variant LOW 795C>T Phe265Phe
M0007232 IAMJJOOB_00003 2817 8 Skin 0.27 protein_coding synonymous_variant LOW 816C>T Asp272Asp
M0007233 IAMJJOOB_00004 3541 14 Skin 0.47 protein_coding synonymous_variant LOW 417T>C Ile139Ile
M0007234 IAMJJOOB_00004 3568 13 Skin 0.43 protein_coding synonymous_variant LOW 444C>T Phe148Phe
M0007235 IAMJJOOB_00004 3676 13 Skin 0.43 protein_coding synonymous_variant LOW 552T>C Asn184Asn
M0007236 IAMJJOOB_00004 3859 6 Skin 0.20 protein_coding synonymous_variant LOW 735G>T Pro245Pro
M0007237 IAMJJOOB_00005 4369 5 Skin 0.17 protein_coding synonymous_variant LOW 354T>C Arg118Arg
M0007238 IAMJJOOB_00006 5152 10 Skin 0.33 protein_coding synonymous_variant LOW 177C>T Arg59Arg
M0007239 IAMJJOOB_00006 5167 10 Skin 0.33 protein_coding synonymous_variant LOW 192T>C Ile64Ile
M0007240 IAMJJOOB_00006 5320 6 Skin 0.20 protein_coding synonymous_variant LOW 345A>G Glu115Glu
M0007241 IAMJJOOB_00006 5329 6 Skin 0.20 protein_coding synonymous_variant LOW 354T>C Thr118Thr
M0007242 IAMJJOOB_00006 5383 5 Skin 0.17 protein_coding synonymous_variant LOW 408A>G Leu136Leu
M0007243 IAMJJOOB_00006 5411 5 Skin 0.17 protein_coding missense_variant MODERATE 436A>C Ser146Arg
M0007244 IAMJJOOB_00003 2916 6 Skin 0.20 protein_coding synonymous_variant LOW 915T>C Arg305Arg
M0007245 IAMJJOOB_00004 3162 8 Skin 0.27 protein_coding missense_variant MODERATE 38T>A Leu13Gln






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
IAMJJOOB_00002 Triclosan [class: Phenolic compounds] 83 1.2e-140 1 305 1.0000 1.0033 experiment
IAMJJOOB_00002 Triclosan [class: Phenolic compounds] 94.1 3.5e-160 1 305 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
IAMJJOOB_00002 ARO:3000814 81.1 1.08e-150 36 305 0.8852 0.7781 fluoroquinolone antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term