Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1550
  Reference Plasmid   1111525849479998_bin.17__k141_1194940
  Reference Plasmid Size   19485
  Reference Plasmid GC Content   0.60
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0007249 CBEFAPHG_00006 5718 11 Skin 0.20 protein_coding synonymous_variant LOW 1074C>T His358His
M0007250 CBEFAPHG_00007 6798 4 Skin 0.07 protein_coding splice_region_variant&stop_retained_variant LOW 1374A>G Ter458Ter
M0007251 CBEFAPHG_00007 6841 5 Skin 0.09 protein_coding missense_variant MODERATE 1331G>A Arg444His
M0007252 CBEFAPHG_00007 6849 5 Skin 0.09 protein_coding synonymous_variant LOW 1323G>T Ala441Ala
M0007253 CBEFAPHG_00007 7368 38 Skin 0.69 protein_coding synonymous_variant LOW 804A>C Thr268Thr
M0007254 CBEFAPHG_00007 7554 9 Skin 0.16 protein_coding synonymous_variant LOW 618G>A Pro206Pro
M0007255 CBEFAPHG_00007 7810 10 Skin 0.18 protein_coding missense_variant MODERATE 362G>A Arg121Gln
M0007256 CBEFAPHG_00007 8134 8 Skin 0.15 protein_coding missense_variant MODERATE 38C>T Ala13Val
M0007257 CBEFAPHG_00008 8555 12 Skin 0.22 protein_coding missense_variant MODERATE 148A>G Lys50Glu
M0007258 CBEFAPHG_00008 8573 12 Skin 0.22 protein_coding missense_variant MODERATE 130G>A Glu44Lys
M0007259 CBEFAPHG_00006 8761 30 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -1970A>C None
M0007260 CBEFAPHG_00006 9827 28 Skin 0.51 protein_coding upstream_gene_variant MODIFIER -3036T>C None
M0007261 CBEFAPHG_00012 11541 22 Skin 0.40 protein_coding synonymous_variant LOW 99A>G Gln33Gln
M0007262 CBEFAPHG_00012 11733 26 Skin 0.47 protein_coding synonymous_variant LOW 291T>C Ile97Ile
M0007263 CBEFAPHG_00012 11829 18 Skin 0.33 protein_coding synonymous_variant LOW 387G>C Thr129Thr
M0007264 CBEFAPHG_00012 11841 18 Skin 0.33 protein_coding synonymous_variant LOW 399C>T Val133Val
M0007265 CBEFAPHG_00012 11859 18 Skin 0.33 protein_coding synonymous_variant LOW 417T>C Asp139Asp
M0007266 CBEFAPHG_00012 12057 12 Skin 0.22 protein_coding synonymous_variant LOW 615G>A Lys205Lys
M0007267 CBEFAPHG_00012 12070 12 Skin 0.22 protein_coding missense_variant MODERATE 628T>C Cys210Arg
M0007268 CBEFAPHG_00012 12152 11 Skin 0.20 protein_coding missense_variant MODERATE 710C>T Ala237Val
M0007269 CBEFAPHG_00012 12876 24 Skin 0.44 protein_coding synonymous_variant LOW 1434T>C Leu478Leu
M0007270 CBEFAPHG_00012 13113 10 Skin 0.18 protein_coding synonymous_variant LOW 1671C>T Gly557Gly
M0007271 CBEFAPHG_00012 13224 21 Skin 0.38 protein_coding synonymous_variant LOW 1782G>A Leu594Leu
M0007272 CBEFAPHG_00012 13287 21 Skin 0.38 protein_coding synonymous_variant LOW 1845G>C Gly615Gly
M0007273 CBEFAPHG_00008 13688 7 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4986C>T None
M0007274 CBEFAPHG_00008 13694 7 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4992C>G None
M0007275 CBEFAPHG_00008 13695 7 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4993C>T None
M0007276 CBEFAPHG_00008 13698 7 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4996G>C None
M0007277 CBEFAPHG_00013 13953 15 Skin 0.27 protein_coding synonymous_variant LOW 912G>C Val304Val
M0007278 CBEFAPHG_00013 13958 15 Skin 0.27 protein_coding missense_variant MODERATE 907A>G Thr303Ala
M0007279 CBEFAPHG_00013 13968 15 Skin 0.27 protein_coding synonymous_variant LOW 897T>C His299His
M0007280 CBEFAPHG_00013 13980 15 Skin 0.27 protein_coding synonymous_variant LOW 885T>C Asp295Asp
M0007281 CBEFAPHG_00013 13986 15 Skin 0.27 protein_coding synonymous_variant LOW 879G>A Gln293Gln
M0007282 CBEFAPHG_00013 13988 15 Skin 0.27 protein_coding missense_variant MODERATE 877C>G Gln293Glu
M0007283 CBEFAPHG_00013 13989 15 Skin 0.27 protein_coding missense_variant MODERATE 876T>A Asp292Glu
M0007284 CBEFAPHG_00013 13992 15 Skin 0.27 protein_coding synonymous_variant LOW 873T>G Pro291Pro
M0007285 CBEFAPHG_00013 14010 15 Skin 0.27 protein_coding synonymous_variant LOW 855G>C Pro285Pro
M0007286 CBEFAPHG_00013 14016 15 Skin 0.27 protein_coding synonymous_variant LOW 849T>C Ile283Ile
M0007287 CBEFAPHG_00013 14022 15 Skin 0.27 protein_coding synonymous_variant LOW 843G>C Leu281Leu
M0007288 CBEFAPHG_00013 14042 15 Skin 0.27 protein_coding missense_variant MODERATE 823G>C Ala275Pro
M0007289 CBEFAPHG_00013 14046 15 Skin 0.27 protein_coding synonymous_variant LOW 819G>C Val273Val
M0007290 CBEFAPHG_00013 14049 15 Skin 0.27 protein_coding synonymous_variant LOW 816G>T Ala272Ala
M0007291 CBEFAPHG_00013 14076 20 Skin 0.36 protein_coding synonymous_variant LOW 789G>A Pro263Pro
M0007292 CBEFAPHG_00013 14080 20 Skin 0.36 protein_coding missense_variant MODERATE 785T>A Phe262Tyr
M0007293 CBEFAPHG_00013 14106 17 Skin 0.31 protein_coding synonymous_variant LOW 759C>G Ala253Ala
M0007294 CBEFAPHG_00013 14124 17 Skin 0.31 protein_coding synonymous_variant LOW 741C>T Ile247Ile
M0007295 CBEFAPHG_00013 14130 17 Skin 0.31 protein_coding missense_variant MODERATE 735G>C Arg245Ser
M0007296 CBEFAPHG_00013 14132 17 Skin 0.31 protein_coding synonymous_variant LOW 733A>C Arg245Arg
M0007297 CBEFAPHG_00013 14136 17 Skin 0.31 protein_coding missense_variant MODERATE 729C>G Asp243Glu
M0007298 CBEFAPHG_00013 14175 17 Skin 0.31 protein_coding synonymous_variant LOW 690T>C Val230Val
M0007299 CBEFAPHG_00013 14189 17 Skin 0.31 protein_coding missense_variant MODERATE 676C>A Gln226Lys
M0007300 CBEFAPHG_00013 14190 17 Skin 0.31 protein_coding synonymous_variant LOW 675G>T Pro225Pro
M0007301 CBEFAPHG_00013 14217 17 Skin 0.31 protein_coding synonymous_variant LOW 648T>C Gly216Gly
M0007302 CBEFAPHG_00013 14229 17 Skin 0.31 protein_coding synonymous_variant LOW 636T>C Ile212Ile
M0007303 CBEFAPHG_00013 14250 17 Skin 0.31 protein_coding synonymous_variant LOW 615G>C Val205Val
M0007304 CBEFAPHG_00013 14286 16 Skin 0.29 protein_coding synonymous_variant LOW 579T>C Asp193Asp
M0007305 CBEFAPHG_00014 15517 10 Skin 0.18 protein_coding missense_variant MODERATE 1054T>C Cys352Arg
M0007306 CBEFAPHG_00014 15558 10 Skin 0.18 protein_coding missense_variant MODERATE 1013G>T Gly338Val
M0007307 CBEFAPHG_00014 15570 10 Skin 0.18 protein_coding missense_variant MODERATE 1001C>A Ala334Asp
M0007308 CBEFAPHG_00014 15579 10 Skin 0.18 protein_coding missense_variant MODERATE 992C>G Ala331Gly
M0007309 CBEFAPHG_00014 16256 7 Skin 0.13 protein_coding synonymous_variant LOW 315C>T Asn105Asn
M0007310 CBEFAPHG_00014 16304 3 Skin 0.05 protein_coding synonymous_variant LOW 267G>A Glu89Glu
M0007311 CBEFAPHG_00014 16307 3 Skin 0.05 protein_coding synonymous_variant LOW 264C>G Val88Val
M0007312 CBEFAPHG_00014 16313 3 Skin 0.05 protein_coding synonymous_variant LOW 258C>G Arg86Arg
M0007313 CBEFAPHG_00015 16856 6 Skin 0.11 protein_coding synonymous_variant LOW 411C>T Asn137Asn
M0007314 CBEFAPHG_00015 16859 6 Skin 0.11 protein_coding synonymous_variant LOW 408C>T Arg136Arg
M0007315 CBEFAPHG_00015 16862 6 Skin 0.11 protein_coding synonymous_variant LOW 405T>C Gly135Gly
M0007316 CBEFAPHG_00015 16880 6 Skin 0.11 protein_coding synonymous_variant LOW 387T>C Gly129Gly
M0007317 CBEFAPHG_00015 16892 6 Skin 0.11 protein_coding synonymous_variant LOW 375C>T Gly125Gly
M0007318 CBEFAPHG_00015 16901 6 Skin 0.11 protein_coding synonymous_variant LOW 366T>C Arg122Arg
M0007319 CBEFAPHG_00015 16910 6 Skin 0.11 protein_coding synonymous_variant LOW 357C>A Pro119Pro
M0007320 CBEFAPHG_00015 16913 6 Skin 0.11 protein_coding synonymous_variant LOW 354C>T Asp118Asp
M0007321 CBEFAPHG_00015 16919 7 Skin 0.13 protein_coding synonymous_variant LOW 348A>G Pro116Pro
M0007322 CBEFAPHG_00015 16952 6 Skin 0.11 protein_coding synonymous_variant LOW 315G>C Gly105Gly
M0007323 CBEFAPHG_00015 16963 6 Skin 0.11 protein_coding missense_variant MODERATE 304G>A Ala102Thr
M0007324 CBEFAPHG_00015 16964 6 Skin 0.11 protein_coding synonymous_variant LOW 303C>T Gly101Gly
M0007325 CBEFAPHG_00015 16970 6 Skin 0.11 protein_coding synonymous_variant LOW 297T>A Gly99Gly
M0007326 CBEFAPHG_00015 16976 6 Skin 0.11 protein_coding synonymous_variant LOW 291C>T His97His
M0007327 CBEFAPHG_00015 17003 7 Skin 0.13 protein_coding synonymous_variant LOW 264T>C Cys88Cys
M0007328 CBEFAPHG_00015 17012 7 Skin 0.13 protein_coding synonymous_variant LOW 255T>C Asn85Asn
M0007329 CBEFAPHG_00015 17018 7 Skin 0.13 protein_coding synonymous_variant LOW 249T>C Phe83Phe
M0007330 CBEFAPHG_00015 17021 7 Skin 0.13 protein_coding synonymous_variant LOW 246C>T Ala82Ala
M0007331 CBEFAPHG_00015 17024 7 Skin 0.13 protein_coding synonymous_variant LOW 243C>T Gly81Gly
M0007332 CBEFAPHG_00015 17027 7 Skin 0.13 protein_coding synonymous_variant LOW 240A>G Glu80Glu
M0007333 CBEFAPHG_00015 17036 7 Skin 0.13 protein_coding synonymous_variant LOW 231C>T His77His
M0007334 CBEFAPHG_00015 17072 6 Skin 0.11 protein_coding synonymous_variant LOW 195T>G Arg65Arg
M0007335 CBEFAPHG_00015 17084 6 Skin 0.11 protein_coding synonymous_variant LOW 183C>T Gly61Gly
M0007336 CBEFAPHG_00010 9302 28 Skin 0.51 protein_coding missense_variant MODERATE 305T>G Val102Gly
M0007337 CBEFAPHG_00001 654 3 Skin 0.05 protein_coding synonymous_variant LOW 588C>A Ser196Ser
M0007338 CBEFAPHG_00001 681 3 Skin 0.05 protein_coding synonymous_variant LOW 615T>C Thr205Thr
M0007339 CBEFAPHG_00001 762 3 Skin 0.05 protein_coding synonymous_variant LOW 696A>G Lys232Lys
M0007340 CBEFAPHG_00003 2585 5 Skin 0.09 protein_coding missense_variant MODERATE 169T>G Tyr57Asp
M0007341 CBEFAPHG_00006 5949 14 Skin 0.25 protein_coding synonymous_variant LOW 843T>C Asp281Asp
M0007342 CBEFAPHG_00006 5964 14 Skin 0.25 protein_coding synonymous_variant LOW 828T>C Tyr276Tyr
M0007343 CBEFAPHG_00006 5970 14 Skin 0.25 protein_coding synonymous_variant LOW 822C>T Leu274Leu
M0007344 CBEFAPHG_00006 6003 12 Skin 0.22 protein_coding missense_variant MODERATE 789G>T Glu263Asp
M0007345 CBEFAPHG_00006 6036 12 Skin 0.22 protein_coding synonymous_variant LOW 756C>T Ile252Ile
M0007346 CBEFAPHG_00006 6041 12 Skin 0.22 protein_coding missense_variant MODERATE 751C>A Leu251Ile
M0007347 CBEFAPHG_00006 6046 12 Skin 0.22 protein_coding missense_variant MODERATE 746A>G Asp249Gly
M0007348 CBEFAPHG_00006 6078 12 Skin 0.22 protein_coding synonymous_variant LOW 714T>A Leu238Leu
M0007349 CBEFAPHG_00006 6084 12 Skin 0.22 protein_coding synonymous_variant LOW 708C>T Phe236Phe
M0007350 CBEFAPHG_00012 12528 22 Skin 0.40 protein_coding synonymous_variant LOW 1086G>A Gln362Gln
M0007351 CBEFAPHG_00012 12651 24 Skin 0.44 protein_coding synonymous_variant LOW 1209A>G Ser403Ser
M0007352 CBEFAPHG_00012 13323 20 Skin 0.36 protein_coding synonymous_variant LOW 1881C>G Ala627Ala
M0007353 CBEFAPHG_00012 13431 17 Skin 0.31 protein_coding synonymous_variant LOW 1989G>A Pro663Pro
M0007354 CBEFAPHG_00012 13446 17 Skin 0.31 protein_coding synonymous_variant LOW 2004G>C Leu668Leu
M0007355 CBEFAPHG_00012 13455 17 Skin 0.31 protein_coding synonymous_variant LOW 2013T>C Asp671Asp
M0007356 CBEFAPHG_00012 13479 18 Skin 0.33 protein_coding synonymous_variant LOW 2037T>C Asp679Asp
M0007357 CBEFAPHG_00012 13494 18 Skin 0.33 protein_coding synonymous_variant LOW 2052G>C Ala684Ala
M0007358 CBEFAPHG_00013 13800 9 Skin 0.16 protein_coding synonymous_variant LOW 1065G>A Glu355Glu
M0007359 CBEFAPHG_00013 13827 8 Skin 0.15 protein_coding missense_variant MODERATE 1038G>T Lys346Asn
M0007360 CBEFAPHG_00013 13836 9 Skin 0.16 protein_coding synonymous_variant LOW 1029T>C Ala343Ala
M0007361 CBEFAPHG_00013 13842 9 Skin 0.16 protein_coding synonymous_variant LOW 1023T>C Phe341Phe
M0007362 CBEFAPHG_00013 13863 8 Skin 0.15 protein_coding synonymous_variant LOW 1002C>T Arg334Arg
M0007363 CBEFAPHG_00015 17255 7 Skin 0.13 protein_coding synonymous_variant LOW 12C>T Ser4Ser
M0007364 CBEFAPHG_00013 17273 7 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2409G>C None
M0007365 CBEFAPHG_00013 17363 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2499A>G None
M0007366 CBEFAPHG_00013 17382 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2518T>G None
M0007367 CBEFAPHG_00013 17384 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2520G>C None
M0007368 CBEFAPHG_00013 17391 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2527C>T None
M0007369 CBEFAPHG_00013 17405 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2541A>T None
M0007370 CBEFAPHG_00013 17408 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2544G>A None
M0007371 CBEFAPHG_00013 17431 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2567A>G None
M0007372 CBEFAPHG_00016 17461 3 Skin 0.05 protein_coding synonymous_variant LOW 30T>A Pro10Pro
M0007373 CBEFAPHG_00016 17480 3 Skin 0.05 protein_coding missense_variant MODERATE 49A>G Ile17Val
M0007374 CBEFAPHG_00016 17492 3 Skin 0.05 protein_coding synonymous_variant LOW 61C>T Leu21Leu
M0007375 CBEFAPHG_00016 17495 3 Skin 0.05 protein_coding synonymous_variant LOW 64T>C Leu22Leu
M0007376 CBEFAPHG_00016 17510 3 Skin 0.05 protein_coding missense_variant MODERATE 79G>A Ala27Thr
M0007377 CBEFAPHG_00016 17542 4 Skin 0.07 protein_coding synonymous_variant LOW 111T>C Ser37Ser
M0007378 CBEFAPHG_00016 17557 4 Skin 0.07 protein_coding synonymous_variant LOW 126G>A Glu42Glu
M0007379 CBEFAPHG_00016 17657 5 Skin 0.09 protein_coding missense_variant MODERATE 226T>G Ser76Ala
M0007380 CBEFAPHG_00006 6134 10 Skin 0.18 protein_coding missense_variant MODERATE 658G>C Val220Leu
M0007381 CBEFAPHG_00006 6139 10 Skin 0.18 protein_coding missense_variant MODERATE 653C>G Thr218Arg
M0007382 CBEFAPHG_00006 6147 10 Skin 0.18 protein_coding synonymous_variant LOW 645T>A Arg215Arg
M0007383 CBEFAPHG_00012 11989 7 Skin 0.13 protein_coding missense_variant MODERATE 547G>C Glu183Gln
M0007384 CBEFAPHG_00012 12600 9 Skin 0.16 protein_coding synonymous_variant LOW 1158T>C Asn386Asn
M0007385 CBEFAPHG_00012 13019 5 Skin 0.09 protein_coding missense_variant MODERATE 1577T>A Phe526Tyr
M0007386 CBEFAPHG_00006 8834 13 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -2043C>G None
M0007387 CBEFAPHG_00008 8414 4 Skin 0.07 protein_coding missense_variant MODERATE 289A>G Thr97Ala
M0007388 CBEFAPHG_00008 8415 4 Skin 0.07 protein_coding synonymous_variant LOW 288C>T Ser96Ser
M0007389 CBEFAPHG_00001 1617 6 Skin 0.11 protein_coding synonymous_variant LOW 1551C>T Gly517Gly
M0007390 CBEFAPHG_00003 2710 3 Skin 0.05 protein_coding missense_variant MODERATE 294A>C Glu98Asp
M0007391 CBEFAPHG_00004 3430 3 Skin 0.05 protein_coding synonymous_variant LOW 210C>T Ile70Ile
M0007392 CBEFAPHG_00013 16649 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1785A>C None
M0007393 CBEFAPHG_00013 16650 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1786G>C None
M0007394 CBEFAPHG_00013 16651 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1787A>C None
M0007395 CBEFAPHG_00013 16652 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1788A>G None
M0007396 CBEFAPHG_00013 16681 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1817C>G None
M0007397 CBEFAPHG_00013 16705 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1841A>G None
M0007398 CBEFAPHG_00015 16730 5 Skin 0.09 protein_coding synonymous_variant LOW 537A>G Ala179Ala
M0007399 CBEFAPHG_00016 18006 4 Skin 0.07 protein_coding missense_variant MODERATE 575G>A Arg192Gln
M0007400 CBEFAPHG_00016 18017 4 Skin 0.07 protein_coding missense_variant MODERATE 586G>A Ala196Thr
M0007401 CBEFAPHG_00018 19425 4 Skin 0.07 protein_coding missense_variant MODERATE 46A>G Thr16Ala
M0007402 CBEFAPHG_00007 7386 6 Skin 0.11 protein_coding synonymous_variant LOW 786G>A Leu262Leu
M0007403 CBEFAPHG_00013 14370 4 Skin 0.07 protein_coding synonymous_variant LOW 495C>T Asp165Asp
M0007404 CBEFAPHG_00009 13748 6 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4549G>A None
M0007405 CBEFAPHG_00013 13905 4 Skin 0.07 protein_coding synonymous_variant LOW 960T>C Arg320Arg
M0007406 CBEFAPHG_00013 13908 4 Skin 0.07 protein_coding synonymous_variant LOW 957G>A Glu319Glu
M0007407 CBEFAPHG_00013 13911 4 Skin 0.07 protein_coding synonymous_variant LOW 954G>T Leu318Leu
M0007408 CBEFAPHG_00013 13922 4 Skin 0.07 protein_coding missense_variant MODERATE 943T>C Tyr315His
M0007409 CBEFAPHG_00013 13923 4 Skin 0.07 protein_coding synonymous_variant LOW 942C>G Leu314Leu
M0007410 CBEFAPHG_00013 16714 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1850A>G None
M0007411 CBEFAPHG_00001 543 3 Skin 0.05 protein_coding synonymous_variant LOW 477C>T Ile159Ile
M0007412 CBEFAPHG_00001 549 3 Skin 0.05 protein_coding synonymous_variant LOW 483G>T Ala161Ala
M0007413 CBEFAPHG_00006 11313 6 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4522A>G None
M0007414 CBEFAPHG_00006 11369 7 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4578T>A None
M0007415 CBEFAPHG_00006 11370 7 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4579T>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
CBEFAPHG_00001 Copper (Cu), Silver (Ag) 76.2 6.1e-288 1 613 1.0147 1.0213 experiment
CBEFAPHG_00001 Copper (Cu), Silver (Ag) 100 0 1 613 1.0000 1.0000 prediction
CBEFAPHG_00003 Copper (Cu) 77.9 1.3e-123 1 264 1.0265 0.7466 prediction
CBEFAPHG_00007 Copper (Cu) 90.2 2.3e-224 1 457 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CBEFAPHG_00014 QTF56219.1|GH13_23 99.1 0 1 542 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term