Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1562
  Reference Plasmid   1111525849480213_bin.15__k141_1224404
  Reference Plasmid Size   34949
  Reference Plasmid GC Content   0.60
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0007480 DIINOOFK_00032 28963 30 Skin 0.35 protein_coding synonymous_variant LOW 303C>G Val101Val
M0007481 DIINOOFK_00030 26822 11 Skin 0.13 protein_coding synonymous_variant LOW 537T>C Phe179Phe
M0007482 DIINOOFK_00032 28801 3 Skin 0.04 protein_coding synonymous_variant LOW 465G>C Leu155Leu
M0007483 DIINOOFK_00032 28810 3 Skin 0.04 protein_coding synonymous_variant LOW 456C>T Gly152Gly
M0007484 DIINOOFK_00032 28831 3 Skin 0.04 protein_coding missense_variant MODERATE 435C>G Cys145Trp
M0007485 DIINOOFK_00032 28832 3 Skin 0.04 protein_coding missense_variant MODERATE 434G>T Cys145Phe
M0007486 DIINOOFK_00032 28833 4 Skin 0.05 protein_coding missense_variant MODERATE 433T>G Cys145Gly
M0007487 DIINOOFK_00032 28834 3 Skin 0.04 protein_coding synonymous_variant LOW 432G>C Arg144Arg
M0007488 DIINOOFK_00032 28837 3 Skin 0.04 protein_coding synonymous_variant LOW 429G>A Glu143Glu
M0007489 DIINOOFK_00032 28848 3 Skin 0.04 protein_coding missense_variant MODERATE 418C>A Leu140Met
M0007490 DIINOOFK_00032 28870 3 Skin 0.04 protein_coding synonymous_variant LOW 396T>C Asp132Asp
M0007491 DIINOOFK_00032 28882 3 Skin 0.04 protein_coding synonymous_variant LOW 384G>C Pro128Pro
M0007492 DIINOOFK_00032 28885 3 Skin 0.04 protein_coding synonymous_variant LOW 381G>A Ala127Ala
M0007493 DIINOOFK_00032 28888 3 Skin 0.04 protein_coding synonymous_variant LOW 378T>C Tyr126Tyr
M0007494 DIINOOFK_00032 28891 3 Skin 0.04 protein_coding synonymous_variant LOW 375C>G Leu125Leu
M0007495 DIINOOFK_00032 28897 3 Skin 0.04 protein_coding synonymous_variant LOW 369T>C Gly123Gly
M0007496 DIINOOFK_00032 28900 3 Skin 0.04 protein_coding synonymous_variant LOW 366C>T Asp122Asp
M0007497 DIINOOFK_00034 31049 17 Skin 0.20 protein_coding synonymous_variant LOW 801C>T Ala267Ala
M0007498 DIINOOFK_00029 24754 5 Skin 0.06 protein_coding synonymous_variant LOW 387C>T His129His
M0007499 DIINOOFK_00026 24279 50 Skin 0.59 protein_coding upstream_gene_variant MODIFIER -2243G>A None
M0007500 DIINOOFK_00029 25807 9 Skin 0.11 protein_coding synonymous_variant LOW 1440G>A Glu480Glu
M0007501 DIINOOFK_00021 18899 8 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1459G>A None
M0007502 DIINOOFK_00025 19684 6 Skin 0.07 protein_coding missense_variant MODERATE 113A>T Asp38Val
M0007503 DIINOOFK_00036 33375 9 Skin 0.11 protein_coding synonymous_variant LOW 417T>C Arg139Arg
M0007504 DIINOOFK_00029 24442 10 Skin 0.12 protein_coding synonymous_variant LOW 75C>T Phe25Phe
M0007505 DIINOOFK_00029 25525 9 Skin 0.11 protein_coding synonymous_variant LOW 1158T>C Gly386Gly
M0007506 DIINOOFK_00022 18021 4 Skin 0.05 protein_coding missense_variant MODERATE 332A>G Lys111Arg
M0007507 DIINOOFK_00021 18034 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -594G>A None
M0007508 DIINOOFK_00015 13291 3 Skin 0.04 protein_coding synonymous_variant LOW 183G>C Thr61Thr
M0007509 DIINOOFK_00016 13797 8 Skin 0.09 protein_coding missense_variant MODERATE 273C>G Asp91Glu
M0007510 DIINOOFK_00025 19607 8 Skin 0.09 protein_coding synonymous_variant LOW 36T>C Gly12Gly
M0007511 DIINOOFK_00036 33819 4 Skin 0.05 protein_coding synonymous_variant LOW 861T>C Arg287Arg
M0007512 DIINOOFK_00036 34290 6 Skin 0.07 protein_coding synonymous_variant LOW 1332T>C His444His
M0007513 DIINOOFK_00023 18456 5 Skin 0.06 protein_coding synonymous_variant LOW 369T>C Asn123Asn
M0007514 DIINOOFK_00021 19119 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1679C>A None
M0007515 DIINOOFK_00021 19301 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1861A>G None
M0007516 DIINOOFK_00021 19335 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1895C>A None
M0007517 DIINOOFK_00021 19337 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1897T>G None
M0007518 DIINOOFK_00021 19341 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1901T>A None
M0007519 DIINOOFK_00021 19346 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1906T>G None
M0007520 DIINOOFK_00026 26054 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4018T>C None
M0007521 DIINOOFK_00026 26058 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4022T>G None
M0007522 DIINOOFK_00021 19163 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1723G>T None
M0007523 DIINOOFK_00026 20531 3 Skin 0.04 protein_coding synonymous_variant LOW 1506A>G Ala502Ala
M0007524 DIINOOFK_00021 22171 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4731G>A None
M0007525 DIINOOFK_00027 22183 3 Skin 0.04 protein_coding synonymous_variant LOW 9A>G Thr3Thr
M0007526 DIINOOFK_00028 24110 11 Skin 0.13 protein_coding synonymous_variant LOW 1215T>C Phe405Phe
M0007527 DIINOOFK_00031 27634 5 Skin 0.06 protein_coding missense_variant MODERATE 124G>C Gly42Arg
M0007528 DIINOOFK_00027 22399 3 Skin 0.04 protein_coding synonymous_variant LOW 225G>A Ala75Ala
M0007529 DIINOOFK_00028 24080 10 Skin 0.12 protein_coding synonymous_variant LOW 1185G>C Pro395Pro
M0007530 DIINOOFK_00028 24067 7 Skin 0.08 protein_coding missense_variant MODERATE 1172C>A Pro391His
M0007531 DIINOOFK_00029 24883 6 Skin 0.07 protein_coding synonymous_variant LOW 516C>T Ala172Ala
M0007532 DIINOOFK_00035 31375 3 Skin 0.04 protein_coding synonymous_variant LOW 228A>G Ala76Ala
M0007533 DIINOOFK_00026 20260 4 Skin 0.05 protein_coding missense_variant MODERATE 1777T>G Ser593Ala
M0007534 DIINOOFK_00026 20288 4 Skin 0.05 protein_coding synonymous_variant LOW 1749T>A Ala583Ala
M0007535 DIINOOFK_00026 20580 3 Skin 0.04 protein_coding missense_variant MODERATE 1457T>C Ile486Thr
M0007536 DIINOOFK_00026 20590 3 Skin 0.04 protein_coding synonymous_variant LOW 1447C>T Leu483Leu
M0007537 DIINOOFK_00026 20591 3 Skin 0.04 protein_coding synonymous_variant LOW 1446C>G Arg482Arg
M0007538 DIINOOFK_00026 21557 5 Skin 0.06 protein_coding synonymous_variant LOW 480T>C Asp160Asp
M0007539 DIINOOFK_00026 21596 5 Skin 0.06 protein_coding synonymous_variant LOW 441T>C Gly147Gly
M0007540 DIINOOFK_00026 21599 5 Skin 0.06 protein_coding synonymous_variant LOW 438C>T Gly146Gly
M0007541 DIINOOFK_00021 17357 5 Skin 0.06 protein_coding synonymous_variant LOW 84G>A Gln28Gln
M0007542 DIINOOFK_00021 17375 5 Skin 0.06 protein_coding synonymous_variant LOW 66A>G Lys22Lys
M0007543 DIINOOFK_00021 19233 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1793T>C None
M0007544 DIINOOFK_00026 20116 4 Skin 0.05 protein_coding missense_variant MODERATE 1921T>C Tyr641His
M0007545 DIINOOFK_00026 20153 4 Skin 0.05 protein_coding synonymous_variant LOW 1884G>A Thr628Thr
M0007546 DIINOOFK_00033 29958 5 Skin 0.06 protein_coding synonymous_variant LOW 249T>G Val83Val
M0007547 DIINOOFK_00033 29976 5 Skin 0.06 protein_coding synonymous_variant LOW 267G>C Arg89Arg
M0007548 DIINOOFK_00021 19002 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1562T>G None
M0007549 DIINOOFK_00026 21044 3 Skin 0.04 protein_coding synonymous_variant LOW 993C>G Leu331Leu
M0007550 DIINOOFK_00026 20642 4 Skin 0.05 protein_coding synonymous_variant LOW 1395C>T Gly465Gly
M0007551 DIINOOFK_00026 20669 4 Skin 0.05 protein_coding synonymous_variant LOW 1368T>C Asp456Asp
M0007552 DIINOOFK_00026 20701 5 Skin 0.06 protein_coding synonymous_variant LOW 1336C>T Leu446Leu
M0007553 DIINOOFK_00026 20708 5 Skin 0.06 protein_coding synonymous_variant LOW 1329T>C Gly443Gly
M0007554 DIINOOFK_00029 25097 4 Skin 0.05 protein_coding missense_variant MODERATE 730A>C Ile244Leu
M0007555 DIINOOFK_00029 25099 4 Skin 0.05 protein_coding missense_variant MODERATE 732C>G Ile244Met
M0007556 DIINOOFK_00029 25129 4 Skin 0.05 protein_coding synonymous_variant LOW 762C>T His254His
M0007557 DIINOOFK_00029 25139 4 Skin 0.05 protein_coding synonymous_variant LOW 772T>C Leu258Leu
M0007558 DIINOOFK_00029 25147 4 Skin 0.05 protein_coding synonymous_variant LOW 780C>A Ala260Ala
M0007559 DIINOOFK_00029 25150 4 Skin 0.05 protein_coding synonymous_variant LOW 783T>C His261His
M0007560 DIINOOFK_00029 25171 4 Skin 0.05 protein_coding synonymous_variant LOW 804T>A Ala268Ala
M0007561 DIINOOFK_00029 25180 4 Skin 0.05 protein_coding synonymous_variant LOW 813G>C Arg271Arg
M0007562 DIINOOFK_00029 25192 4 Skin 0.05 protein_coding synonymous_variant LOW 825G>A Val275Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
DIINOOFK_00002 3.A.1.3.23 90.3 9.8e-130 1 257 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
DIINOOFK_00003 3.A.1.3.23 80.3 5.6e-114 1 249 0.9960 0.9689 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
DIINOOFK_00005 3.A.1.3.23 74 1.9e-92 3 229 0.9913 0.8833 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily