Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1579
  Reference Plasmid   1111525849480358_bin.11__k141_342243
  Reference Plasmid Size   3307
  Reference Plasmid GC Content   0.73
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0007862 EPNNCJGL_00001 824 3 Skin 0.75 protein_coding synonymous_variant LOW 801A>C Ala267Ala
M0007863 EPNNCJGL_00002 946 3 Skin 0.75 protein_coding synonymous_variant LOW 36A>C Gly12Gly
M0007864 EPNNCJGL_00002 955 3 Skin 0.75 protein_coding synonymous_variant LOW 45C>T Gly15Gly
M0007865 EPNNCJGL_00002 1633 3 Skin 0.75 protein_coding synonymous_variant LOW 723G>C Gly241Gly
M0007866 EPNNCJGL_00002 1855 3 Skin 0.75 protein_coding synonymous_variant LOW 945G>C Pro315Pro
M0007867 EPNNCJGL_00001 1872 3 Skin 0.75 protein_coding downstream_gene_variant MODIFIER *1000A>C None
M0007868 EPNNCJGL_00003 1996 3 Skin 0.75 protein_coding synonymous_variant LOW 471T>C Ala157Ala
M0007869 EPNNCJGL_00003 2005 3 Skin 0.75 protein_coding synonymous_variant LOW 462T>C Ala154Ala
M0007870 EPNNCJGL_00003 2346 3 Skin 0.75 protein_coding missense_variant MODERATE 121C>A Leu41Met
M0007871 EPNNCJGL_00003 2386 3 Skin 0.75 protein_coding synonymous_variant LOW 81C>G Ala27Ala
M0007872 EPNNCJGL_00001 78 3 Skin 0.75 protein_coding missense_variant MODERATE 55T>C Ser19Pro
M0007873 EPNNCJGL_00001 283 3 Skin 0.75 protein_coding missense_variant MODERATE 260C>T Ser87Phe






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
EPNNCJGL_00002 QJD17754.1|GT8 79.6 1.67e-183 1 316 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term