Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1580
  Reference Plasmid   1111525849480358_bin.11__k141_344010
  Reference Plasmid Size   9028
  Reference Plasmid GC Content   0.67
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0007874 FOIMCCAK_00002 2421 3 Skin 0.75 protein_coding synonymous_variant LOW 285A>C Ser95Ser
M0007875 FOIMCCAK_00002 2424 3 Skin 0.75 protein_coding synonymous_variant LOW 282A>G Leu94Leu
M0007876 FOIMCCAK_00002 2502 3 Skin 0.75 protein_coding synonymous_variant LOW 204T>C Ile68Ile
M0007877 FOIMCCAK_00002 2598 3 Skin 0.75 protein_coding synonymous_variant LOW 108T>G Ala36Ala
M0007878 FOIMCCAK_00002 2607 3 Skin 0.75 protein_coding synonymous_variant LOW 99T>C Leu33Leu
M0007879 FOIMCCAK_00002 2628 3 Skin 0.75 protein_coding synonymous_variant LOW 78C>G Arg26Arg
M0007880 FOIMCCAK_00003 3387 3 Skin 0.75 protein_coding synonymous_variant LOW 417T>C Ala139Ala
M0007881 FOIMCCAK_00003 3429 3 Skin 0.75 protein_coding synonymous_variant LOW 375G>C Leu125Leu
M0007882 FOIMCCAK_00003 3462 3 Skin 0.75 protein_coding synonymous_variant LOW 342T>C Asp114Asp
M0007883 FOIMCCAK_00003 3551 3 Skin 0.75 protein_coding synonymous_variant LOW 253C>T Leu85Leu
M0007884 FOIMCCAK_00003 3581 3 Skin 0.75 protein_coding synonymous_variant LOW 223T>C Leu75Leu
M0007885 FOIMCCAK_00003 3594 3 Skin 0.75 protein_coding missense_variant MODERATE 210C>G Ile70Met
M0007886 FOIMCCAK_00003 3597 3 Skin 0.75 protein_coding synonymous_variant LOW 207C>G Ala69Ala
M0007887 FOIMCCAK_00003 3612 3 Skin 0.75 protein_coding synonymous_variant LOW 192G>C Ala64Ala
M0007888 FOIMCCAK_00003 3615 3 Skin 0.75 protein_coding synonymous_variant LOW 189C>T Phe63Phe
M0007889 FOIMCCAK_00003 3618 3 Skin 0.75 protein_coding synonymous_variant LOW 186G>C Pro62Pro
M0007890 FOIMCCAK_00003 3642 3 Skin 0.75 protein_coding synonymous_variant LOW 162T>C Val54Val
M0007891 FOIMCCAK_00003 3647 3 Skin 0.75 protein_coding synonymous_variant LOW 157T>C Leu53Leu
M0007892 FOIMCCAK_00004 4184 3 Skin 0.75 protein_coding synonymous_variant LOW 562T>C Leu188Leu
M0007893 FOIMCCAK_00004 4188 3 Skin 0.75 protein_coding synonymous_variant LOW 558G>C Gly186Gly
M0007894 FOIMCCAK_00005 4858 3 Skin 0.75 protein_coding missense_variant MODERATE 1864C>G Gln622Glu
M0007895 FOIMCCAK_00005 4964 3 Skin 0.75 protein_coding synonymous_variant LOW 1758T>C Asp586Asp
M0007896 FOIMCCAK_00005 5648 3 Skin 0.75 protein_coding synonymous_variant LOW 1074C>G Val358Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term