Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1589
  Reference Plasmid   1111525849480457_bin.14__k141_33206
  Reference Plasmid Size   21282
  Reference Plasmid GC Content   0.61
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0007989 LJLNLEBP_00001 606 6 Skin 0.04 protein_coding synonymous_variant LOW 507C>T Val169Val
M0007990 LJLNLEBP_00003 813 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -1405C>G None
M0007991 LJLNLEBP_00003 837 23 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -1381C>G None
M0007992 LJLNLEBP_00002 1847 7 Skin 0.04 protein_coding missense_variant MODERATE 58G>A Ala20Thr
M0007993 LJLNLEBP_00002 2113 16 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -209C>T None
M0007994 LJLNLEBP_00003 2356 6 Skin 0.04 protein_coding missense_variant MODERATE 139A>C Lys47Gln
M0007995 LJLNLEBP_00003 2696 11 Skin 0.07 protein_coding missense_variant MODERATE 479T>C Leu160Ser
M0007996 LJLNLEBP_00003 2842 7 Skin 0.04 protein_coding missense_variant MODERATE 625G>C Ala209Pro
M0007997 LJLNLEBP_00006 4852 19 Skin 0.12 protein_coding missense_variant MODERATE 11C>T Ala4Val
M0007998 LJLNLEBP_00002 5001 14 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3097C>T None
M0007999 LJLNLEBP_00002 5027 14 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3123A>G None
M0008000 LJLNLEBP_00002 6171 12 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4267A>G None
M0008001 LJLNLEBP_00002 6623 43 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4719C>G None
M0008002 LJLNLEBP_00015 9748 24 Skin 0.15 protein_coding missense_variant MODERATE 557G>C Gly186Ala
M0008003 LJLNLEBP_00008 5858 6 Skin 0.04 protein_coding missense_variant MODERATE 227G>A Gly76Asp
M0008004 LJLNLEBP_00022 15251 17 Skin 0.10 protein_coding missense_variant MODERATE 600C>G Phe200Leu
M0008005 LJLNLEBP_00023 16418 16 Skin 0.10 protein_coding missense_variant MODERATE 59A>G Gln20Arg
M0008006 LJLNLEBP_00019 13192 4 Skin 0.02 protein_coding synonymous_variant LOW 162A>G Ser54Ser
M0008007 LJLNLEBP_00019 13207 4 Skin 0.02 protein_coding synonymous_variant LOW 147G>A Val49Val
M0008008 LJLNLEBP_00005 4485 9 Skin 0.05 protein_coding synonymous_variant LOW 225C>T Ile75Ile
M0008009 LJLNLEBP_00005 4496 9 Skin 0.05 protein_coding missense_variant MODERATE 236C>T Ala79Val
M0008010 LJLNLEBP_00002 5366 9 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3462G>A None
M0008011 LJLNLEBP_00008 5880 10 Skin 0.06 protein_coding synonymous_variant LOW 249G>A Leu83Leu
M0008012 LJLNLEBP_00002 6370 11 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4466G>A None
M0008013 LJLNLEBP_00013 8244 13 Skin 0.08 protein_coding missense_variant MODERATE 4G>A Val2Met
M0008014 LJLNLEBP_00003 3415 4 Skin 0.02 protein_coding missense_variant MODERATE 1198A>G Thr400Ala
M0008015 LJLNLEBP_00025 20276 13 Skin 0.08 protein_coding synonymous_variant LOW 651G>T Ala217Ala
M0008016 LJLNLEBP_00023 20977 10 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4501T>C None
M0008017 LJLNLEBP_00010 7179 15 Skin 0.09 protein_coding synonymous_variant LOW 102T>C Ser34Ser
M0008018 LJLNLEBP_00022 15154 10 Skin 0.06 protein_coding missense_variant MODERATE 697A>G Thr233Ala
M0008019 LJLNLEBP_00023 20979 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4503A>G None
M0008020 LJLNLEBP_00004 3601 4 Skin 0.02 protein_coding synonymous_variant LOW 63C>T Ala21Ala
M0008021 LJLNLEBP_00004 3643 4 Skin 0.02 protein_coding synonymous_variant LOW 105C>T Thr35Thr
M0008022 LJLNLEBP_00004 3664 9 Skin 0.05 protein_coding synonymous_variant LOW 126A>G Glu42Glu
M0008023 LJLNLEBP_00004 3685 4 Skin 0.02 protein_coding synonymous_variant LOW 147C>T Arg49Arg
M0008024 LJLNLEBP_00004 3701 4 Skin 0.02 protein_coding synonymous_variant LOW 163C>T Leu55Leu
M0008025 LJLNLEBP_00004 3727 9 Skin 0.05 protein_coding synonymous_variant LOW 189A>G Gln63Gln
M0008026 LJLNLEBP_00004 3745 4 Skin 0.02 protein_coding synonymous_variant LOW 207C>T Ser69Ser
M0008027 LJLNLEBP_00004 3761 4 Skin 0.02 protein_coding missense_variant MODERATE 223A>G Thr75Ala
M0008028 LJLNLEBP_00004 3769 4 Skin 0.02 protein_coding synonymous_variant LOW 231C>T Ala77Ala
M0008029 LJLNLEBP_00004 3775 9 Skin 0.05 protein_coding synonymous_variant LOW 237T>C Thr79Thr
M0008030 LJLNLEBP_00004 3784 9 Skin 0.05 protein_coding synonymous_variant LOW 246C>T Cys82Cys
M0008031 LJLNLEBP_00004 3799 4 Skin 0.02 protein_coding synonymous_variant LOW 261C>T Ala87Ala
M0008032 LJLNLEBP_00004 3946 3 Skin 0.02 protein_coding synonymous_variant LOW 408A>G Arg136Arg
M0008033 LJLNLEBP_00004 3968 9 Skin 0.05 protein_coding missense_variant MODERATE 430T>C Ser144Pro
M0008034 LJLNLEBP_00004 3992 9 Skin 0.05 protein_coding missense_variant MODERATE 454A>G Lys152Glu
M0008035 LJLNLEBP_00004 4066 9 Skin 0.05 protein_coding synonymous_variant LOW 528T>C Phe176Phe
M0008036 LJLNLEBP_00004 4088 9 Skin 0.05 protein_coding missense_variant MODERATE 550A>G Ile184Val
M0008037 LJLNLEBP_00004 4136 9 Skin 0.05 protein_coding synonymous_variant LOW 598T>C Leu200Leu
M0008038 LJLNLEBP_00004 4150 3 Skin 0.02 protein_coding synonymous_variant LOW 612C>T Ala204Ala
M0008039 LJLNLEBP_00004 4192 7 Skin 0.04 protein_coding synonymous_variant LOW 654T>C Asn218Asn
M0008040 LJLNLEBP_00004 4207 3 Skin 0.02 protein_coding synonymous_variant LOW 669T>C Leu223Leu
M0008041 LJLNLEBP_00004 4215 7 Skin 0.04 protein_coding missense_variant MODERATE 677C>T Ala226Val
M0008042 LJLNLEBP_00005 4276 3 Skin 0.02 protein_coding missense_variant MODERATE 16C>T Leu6Phe
M0008043 LJLNLEBP_00005 4483 5 Skin 0.03 protein_coding missense_variant MODERATE 223A>G Ile75Val
M0008044 LJLNLEBP_00005 4513 3 Skin 0.02 protein_coding missense_variant MODERATE 253C>A His85Asn
M0008045 LJLNLEBP_00005 4760 5 Skin 0.03 protein_coding missense_variant MODERATE 500C>T Pro167Leu
M0008046 LJLNLEBP_00005 4765 4 Skin 0.02 protein_coding missense_variant MODERATE 505G>A Gly169Arg
M0008047 LJLNLEBP_00005 4766 5 Skin 0.03 protein_coding missense_variant MODERATE 506G>A Gly169Glu
M0008048 LJLNLEBP_00005 4767 5 Skin 0.03 protein_coding synonymous_variant LOW 507A>C Gly169Gly
M0008049 LJLNLEBP_00005 4769 5 Skin 0.03 protein_coding missense_variant MODERATE 509C>T Ala170Val
M0008050 LJLNLEBP_00005 4775 5 Skin 0.03 protein_coding missense_variant MODERATE 515T>C Ile172Thr
M0008051 LJLNLEBP_00005 4777 4 Skin 0.02 protein_coding missense_variant MODERATE 517T>A Ser173Thr
M0008052 LJLNLEBP_00005 4781 4 Skin 0.02 protein_coding missense_variant MODERATE 521C>T Thr174Met
M0008053 LJLNLEBP_00005 4799 5 Skin 0.03 protein_coding missense_variant MODERATE 539T>C Leu180Ser
M0008054 LJLNLEBP_00006 4904 4 Skin 0.02 protein_coding synonymous_variant LOW 63T>C Arg21Arg
M0008055 LJLNLEBP_00006 4934 4 Skin 0.02 protein_coding synonymous_variant LOW 93T>C Asp31Asp
M0008056 LJLNLEBP_00007 5106 5 Skin 0.03 protein_coding missense_variant MODERATE 19A>G Asn7Asp
M0008057 LJLNLEBP_00007 5175 4 Skin 0.02 protein_coding missense_variant MODERATE 88G>A Ala30Thr
M0008058 LJLNLEBP_00007 5178 4 Skin 0.02 protein_coding missense_variant MODERATE 91G>A Val31Ile
M0008059 LJLNLEBP_00007 5191 4 Skin 0.02 protein_coding missense_variant MODERATE 104A>G Asn35Ser
M0008060 LJLNLEBP_00002 5245 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3341C>A None
M0008061 LJLNLEBP_00002 5252 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3348T>C None
M0008062 LJLNLEBP_00002 5257 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3353C>T None
M0008063 LJLNLEBP_00002 5261 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3357G>A None
M0008064 LJLNLEBP_00002 5308 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3404G>T None
M0008065 LJLNLEBP_00002 5332 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3428A>G None
M0008066 LJLNLEBP_00002 5336 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3432G>T None
M0008067 LJLNLEBP_00002 5358 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3454C>T None
M0008068 LJLNLEBP_00002 5410 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3506G>A None
M0008069 LJLNLEBP_00002 5420 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3516C>T None
M0008070 LJLNLEBP_00002 5508 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3604C>T None
M0008071 LJLNLEBP_00002 5590 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3686G>A None
M0008072 LJLNLEBP_00002 5595 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3691C>T None
M0008073 LJLNLEBP_00002 5624 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3720G>A None
M0008074 LJLNLEBP_00008 5636 4 Skin 0.02 protein_coding missense_variant MODERATE 5A>C Asn2Thr
M0008075 LJLNLEBP_00008 5637 4 Skin 0.02 protein_coding synonymous_variant LOW 6T>C Asn2Asn
M0008076 LJLNLEBP_00008 5650 5 Skin 0.03 protein_coding missense_variant MODERATE 19A>G Asn7Asp
M0008077 LJLNLEBP_00008 5705 4 Skin 0.02 protein_coding missense_variant MODERATE 74T>A Ile25Asn
M0008078 LJLNLEBP_00008 5709 4 Skin 0.02 protein_coding synonymous_variant LOW 78G>A Gln26Gln
M0008079 LJLNLEBP_00008 5718 4 Skin 0.02 protein_coding synonymous_variant LOW 87G>A Val29Val
M0008080 LJLNLEBP_00008 5751 4 Skin 0.02 protein_coding synonymous_variant LOW 120G>A Gly40Gly
M0008081 LJLNLEBP_00008 5780 4 Skin 0.02 protein_coding missense_variant MODERATE 149C>T Ala50Val
M0008082 LJLNLEBP_00008 5784 4 Skin 0.02 protein_coding synonymous_variant LOW 153A>G Ser51Ser
M0008083 LJLNLEBP_00008 5798 4 Skin 0.02 protein_coding missense_variant MODERATE 167T>C Leu56Pro
M0008084 LJLNLEBP_00008 5810 4 Skin 0.02 protein_coding missense_variant MODERATE 179C>T Thr60Ile
M0008085 LJLNLEBP_00008 5818 4 Skin 0.02 protein_coding synonymous_variant LOW 187T>C Leu63Leu
M0008086 LJLNLEBP_00008 5835 4 Skin 0.02 protein_coding synonymous_variant LOW 204A>G Glu68Glu
M0008087 LJLNLEBP_00008 5841 4 Skin 0.02 protein_coding synonymous_variant LOW 210G>A Glu70Glu
M0008088 LJLNLEBP_00008 5845 4 Skin 0.02 protein_coding missense_variant MODERATE 214A>C Ser72Arg
M0008089 LJLNLEBP_00008 5890 4 Skin 0.02 protein_coding synonymous_variant LOW 259T>C Leu87Leu
M0008090 LJLNLEBP_00008 5911 4 Skin 0.02 protein_coding stop_lost&splice_region_variant HIGH 280T>C Ter94Glnext*?
M0008091 LJLNLEBP_00002 5962 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4058G>A None
M0008092 LJLNLEBP_00002 5972 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4068G>A None
M0008093 LJLNLEBP_00002 6010 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4106C>T None
M0008094 LJLNLEBP_00002 6028 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4124T>C None
M0008095 LJLNLEBP_00002 6043 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4139G>A None
M0008096 LJLNLEBP_00002 6070 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4166G>A None
M0008097 LJLNLEBP_00002 6097 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4193T>C None
M0008098 LJLNLEBP_00002 6134 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4230T>C None
M0008099 LJLNLEBP_00002 6146 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4242C>T None
M0008100 LJLNLEBP_00002 6179 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4275C>A None
M0008101 LJLNLEBP_00002 6188 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4284C>T None
M0008102 LJLNLEBP_00009 6248 4 Skin 0.02 protein_coding missense_variant MODERATE 113T>C Phe38Ser
M0008103 LJLNLEBP_00009 6283 4 Skin 0.02 protein_coding synonymous_variant LOW 78G>A Lys26Lys
M0008104 LJLNLEBP_00009 6335 4 Skin 0.02 protein_coding missense_variant MODERATE 26A>G Glu9Gly
M0008105 LJLNLEBP_00009 6347 4 Skin 0.02 protein_coding missense_variant MODERATE 14C>T Pro5Leu
M0008106 LJLNLEBP_00009 6350 4 Skin 0.02 protein_coding missense_variant MODERATE 11C>T Thr4Ile
M0008107 LJLNLEBP_00002 6363 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4459A>G None
M0008108 LJLNLEBP_00002 6398 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4494G>A None
M0008109 LJLNLEBP_00002 6461 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4557A>G None
M0008110 LJLNLEBP_00002 6511 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4607T>C None
M0008111 LJLNLEBP_00002 6512 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4608T>G None
M0008112 LJLNLEBP_00002 6520 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4616C>T None
M0008113 LJLNLEBP_00002 6612 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4708A>G None
M0008114 LJLNLEBP_00002 6617 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4713T>C None
M0008115 LJLNLEBP_00002 6621 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4717A>G None
M0008116 LJLNLEBP_00002 6683 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4779G>A None
M0008117 LJLNLEBP_00002 6709 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4805T>C None
M0008118 LJLNLEBP_00002 6746 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4842T>C None
M0008119 LJLNLEBP_00002 6832 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4928A>G None
M0008120 LJLNLEBP_00009 7005 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -645A>G None
M0008121 LJLNLEBP_00009 7057 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -697A>C None
M0008122 LJLNLEBP_00010 7079 5 Skin 0.03 protein_coding start_lost HIGH 2T>C Met1?
M0008123 LJLNLEBP_00010 7246 4 Skin 0.02 protein_coding missense_variant MODERATE 169A>G Thr57Ala
M0008124 LJLNLEBP_00010 7263 4 Skin 0.02 protein_coding synonymous_variant LOW 186T>C Thr62Thr
M0008125 LJLNLEBP_00010 7280 4 Skin 0.02 protein_coding missense_variant MODERATE 203A>G Asn68Ser
M0008126 LJLNLEBP_00010 7281 4 Skin 0.02 protein_coding synonymous_variant LOW 204T>C Asn68Asn
M0008127 LJLNLEBP_00010 7350 4 Skin 0.02 protein_coding missense_variant MODERATE 273G>C Lys91Asn
M0008128 LJLNLEBP_00010 7352 4 Skin 0.02 protein_coding missense_variant MODERATE 275C>T Ala92Val
M0008129 LJLNLEBP_00011 7386 4 Skin 0.02 protein_coding missense_variant MODERATE 34A>G Ser12Gly
M0008130 LJLNLEBP_00011 7406 4 Skin 0.02 protein_coding synonymous_variant LOW 54A>G Glu18Glu
M0008131 LJLNLEBP_00011 7476 4 Skin 0.02 protein_coding missense_variant MODERATE 124G>T Val42Phe
M0008132 LJLNLEBP_00011 7481 4 Skin 0.02 protein_coding synonymous_variant LOW 129G>A Ala43Ala
M0008133 LJLNLEBP_00011 7563 4 Skin 0.02 protein_coding missense_variant MODERATE 211C>T Pro71Ser
M0008134 LJLNLEBP_00009 7635 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1275G>A None
M0008135 LJLNLEBP_00009 7669 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1309A>G None
M0008136 LJLNLEBP_00009 7670 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1310G>T None
M0008137 LJLNLEBP_00009 7680 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1320A>C None
M0008138 LJLNLEBP_00012 7728 4 Skin 0.02 protein_coding missense_variant MODERATE 250C>T Pro84Ser
M0008139 LJLNLEBP_00012 7788 4 Skin 0.02 protein_coding missense_variant MODERATE 190A>G Met64Val
M0008140 LJLNLEBP_00012 7818 4 Skin 0.02 protein_coding missense_variant MODERATE 160G>T Ala54Ser
M0008141 LJLNLEBP_00015 9498 3 Skin 0.02 protein_coding missense_variant MODERATE 307C>T Arg103Cys
M0008142 LJLNLEBP_00015 9503 6 Skin 0.04 protein_coding synonymous_variant LOW 312C>G Leu104Leu
M0008143 LJLNLEBP_00015 9562 6 Skin 0.04 protein_coding missense_variant MODERATE 371G>A Gly124Glu
M0008144 LJLNLEBP_00015 9641 9 Skin 0.05 protein_coding synonymous_variant LOW 450A>T Arg150Arg
M0008145 LJLNLEBP_00015 9659 6 Skin 0.04 protein_coding synonymous_variant LOW 468C>T Pro156Pro
M0008146 LJLNLEBP_00015 9747 7 Skin 0.04 protein_coding missense_variant MODERATE 556G>A Gly186Ser
M0008147 LJLNLEBP_00015 9786 6 Skin 0.04 protein_coding missense_variant MODERATE 595C>T Leu199Phe
M0008148 LJLNLEBP_00015 9802 6 Skin 0.04 protein_coding missense_variant MODERATE 611C>T Ala204Val
M0008149 LJLNLEBP_00015 9805 6 Skin 0.04 protein_coding missense_variant MODERATE 614C>T Ser205Phe
M0008150 LJLNLEBP_00015 9855 7 Skin 0.04 protein_coding missense_variant MODERATE 664T>C Ser222Pro
M0008151 LJLNLEBP_00015 9871 7 Skin 0.04 protein_coding missense_variant MODERATE 680C>A Thr227Asn
M0008152 LJLNLEBP_00015 9941 6 Skin 0.04 protein_coding synonymous_variant LOW 750C>T Thr250Thr
M0008153 LJLNLEBP_00015 9980 6 Skin 0.04 protein_coding synonymous_variant LOW 789C>T Ser263Ser
M0008154 LJLNLEBP_00015 10000 6 Skin 0.04 protein_coding missense_variant MODERATE 809T>C Met270Thr
M0008155 LJLNLEBP_00015 10008 6 Skin 0.04 protein_coding missense_variant MODERATE 817G>A Glu273Lys
M0008156 LJLNLEBP_00015 10019 6 Skin 0.04 protein_coding synonymous_variant LOW 828A>C Pro276Pro
M0008157 LJLNLEBP_00015 10048 6 Skin 0.04 protein_coding missense_variant MODERATE 857G>A Gly286Asp
M0008158 LJLNLEBP_00015 10060 6 Skin 0.04 protein_coding missense_variant MODERATE 869C>T Pro290Leu
M0008159 LJLNLEBP_00015 10099 6 Skin 0.04 protein_coding missense_variant MODERATE 908C>T Pro303Leu
M0008160 LJLNLEBP_00015 10114 6 Skin 0.04 protein_coding missense_variant MODERATE 923T>C Ile308Thr
M0008161 LJLNLEBP_00015 10146 6 Skin 0.04 protein_coding missense_variant MODERATE 955A>G Thr319Ala
M0008162 LJLNLEBP_00015 10158 6 Skin 0.04 protein_coding synonymous_variant LOW 967C>T Leu323Leu
M0008163 LJLNLEBP_00015 10162 6 Skin 0.04 protein_coding missense_variant MODERATE 971G>A Arg324Lys
M0008164 LJLNLEBP_00015 10219 6 Skin 0.04 protein_coding missense_variant MODERATE 1028G>A Arg343His
M0008165 LJLNLEBP_00015 10364 6 Skin 0.04 protein_coding synonymous_variant LOW 1173C>T Arg391Arg
M0008166 LJLNLEBP_00016 10494 6 Skin 0.04 protein_coding missense_variant MODERATE 197A>C Asn66Thr
M0008167 LJLNLEBP_00016 10505 6 Skin 0.04 protein_coding synonymous_variant LOW 186G>A Arg62Arg
M0008168 LJLNLEBP_00016 10549 6 Skin 0.04 protein_coding missense_variant MODERATE 142A>G Thr48Ala
M0008169 LJLNLEBP_00016 10641 6 Skin 0.04 protein_coding missense_variant MODERATE 50C>T Ser17Phe
M0008170 LJLNLEBP_00016 10648 6 Skin 0.04 protein_coding missense_variant MODERATE 43G>A Val15Met
M0008171 LJLNLEBP_00016 10674 6 Skin 0.04 protein_coding missense_variant MODERATE 17A>G His6Arg
M0008172 LJLNLEBP_00017 10781 6 Skin 0.04 protein_coding missense_variant MODERATE 1030A>G Asn344Asp
M0008173 LJLNLEBP_00017 10882 6 Skin 0.04 protein_coding missense_variant MODERATE 929G>A Cys310Tyr
M0008174 LJLNLEBP_00017 11004 5 Skin 0.03 protein_coding synonymous_variant LOW 807C>T Gly269Gly
M0008175 LJLNLEBP_00017 11062 6 Skin 0.04 protein_coding missense_variant MODERATE 749A>G Glu250Gly
M0008176 LJLNLEBP_00017 11148 5 Skin 0.03 protein_coding missense_variant MODERATE 663C>A Phe221Leu
M0008177 LJLNLEBP_00017 11345 4 Skin 0.02 protein_coding missense_variant MODERATE 466T>C Tyr156His
M0008178 LJLNLEBP_00017 11463 6 Skin 0.04 protein_coding synonymous_variant LOW 348G>A Ser116Ser
M0008179 LJLNLEBP_00017 11489 8 Skin 0.05 protein_coding missense_variant MODERATE 322T>A Phe108Ile
M0008180 LJLNLEBP_00017 11523 5 Skin 0.03 protein_coding missense_variant MODERATE 288C>G Asp96Glu
M0008181 LJLNLEBP_00017 11528 5 Skin 0.03 protein_coding missense_variant MODERATE 283G>A Ala95Thr
M0008182 LJLNLEBP_00017 11613 5 Skin 0.03 protein_coding synonymous_variant LOW 198A>G Ala66Ala
M0008183 LJLNLEBP_00017 11654 4 Skin 0.02 protein_coding missense_variant MODERATE 157G>A Asp53Asn
M0008184 LJLNLEBP_00017 11689 4 Skin 0.02 protein_coding missense_variant MODERATE 122C>T Ser41Leu
M0008185 LJLNLEBP_00012 11833 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3856A>C None
M0008186 LJLNLEBP_00012 11875 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3898C>A None
M0008187 LJLNLEBP_00012 11883 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3906T>C None
M0008188 LJLNLEBP_00012 11884 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3907T>A None
M0008189 LJLNLEBP_00012 11888 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3911A>T None
M0008190 LJLNLEBP_00012 11889 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3912G>A None
M0008191 LJLNLEBP_00012 11890 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3913T>C None
M0008192 LJLNLEBP_00012 11893 6 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3916T>C None
M0008193 LJLNLEBP_00012 11896 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3919C>T None
M0008194 LJLNLEBP_00012 12066 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4089T>C None
M0008195 LJLNLEBP_00018 12081 5 Skin 0.03 protein_coding missense_variant MODERATE 332T>C Val111Ala
M0008196 LJLNLEBP_00002 1175 11 Skin 0.07 protein_coding missense_variant MODERATE 730C>T Pro244Ser
M0008197 LJLNLEBP_00002 1200 11 Skin 0.07 protein_coding synonymous_variant LOW 705A>G Ser235Ser
M0008198 LJLNLEBP_00002 1514 6 Skin 0.04 protein_coding missense_variant MODERATE 391G>A Val131Met
M0008199 LJLNLEBP_00002 1557 7 Skin 0.04 protein_coding synonymous_variant LOW 348T>C Tyr116Tyr
M0008200 LJLNLEBP_00002 2139 9 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -235G>A None
M0008201 LJLNLEBP_00002 2149 9 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -245T>C None
M0008202 LJLNLEBP_00003 2595 7 Skin 0.04 protein_coding synonymous_variant LOW 378C>T Asp126Asp
M0008203 LJLNLEBP_00003 2892 11 Skin 0.07 protein_coding synonymous_variant LOW 675C>T Cys225Cys
M0008204 LJLNLEBP_00003 2920 9 Skin 0.05 protein_coding missense_variant MODERATE 703T>G Leu235Val
M0008205 LJLNLEBP_00003 3104 8 Skin 0.05 protein_coding missense_variant MODERATE 887T>C Met296Thr
M0008206 LJLNLEBP_00003 3138 7 Skin 0.04 protein_coding synonymous_variant LOW 921G>C Leu307Leu
M0008207 LJLNLEBP_00003 3154 9 Skin 0.05 protein_coding missense_variant MODERATE 937A>G Ile313Val
M0008208 LJLNLEBP_00004 3586 5 Skin 0.03 protein_coding synonymous_variant LOW 48T>C Pro16Pro
M0008209 LJLNLEBP_00004 3590 5 Skin 0.03 protein_coding missense_variant MODERATE 52C>G Gln18Glu
M0008210 LJLNLEBP_00004 3592 5 Skin 0.03 protein_coding missense_variant MODERATE 54G>T Gln18His
M0008211 LJLNLEBP_00004 3593 5 Skin 0.03 protein_coding missense_variant MODERATE 55A>G Ile19Val
M0008212 LJLNLEBP_00004 3604 5 Skin 0.03 protein_coding synonymous_variant LOW 66A>G Pro22Pro
M0008213 LJLNLEBP_00004 3616 5 Skin 0.03 protein_coding synonymous_variant LOW 78T>C Thr26Thr
M0008214 LJLNLEBP_00004 3631 5 Skin 0.03 protein_coding synonymous_variant LOW 93C>T Ala31Ala
M0008215 LJLNLEBP_00004 3877 7 Skin 0.04 protein_coding synonymous_variant LOW 339C>T Tyr113Tyr
M0008216 LJLNLEBP_00004 3930 7 Skin 0.04 protein_coding missense_variant MODERATE 392A>G Glu131Gly
M0008217 LJLNLEBP_00004 3934 7 Skin 0.04 protein_coding synonymous_variant LOW 396T>G Leu132Leu
M0008218 LJLNLEBP_00008 5731 4 Skin 0.02 protein_coding missense_variant MODERATE 100A>G Lys34Glu
M0008219 LJLNLEBP_00002 6627 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4723C>T None
M0008220 LJLNLEBP_00003 3349 5 Skin 0.03 protein_coding synonymous_variant LOW 1132T>C Leu378Leu
M0008221 LJLNLEBP_00018 12251 4 Skin 0.02 protein_coding synonymous_variant LOW 162A>G Ala54Ala
M0008222 LJLNLEBP_00018 12310 5 Skin 0.03 protein_coding missense_variant MODERATE 103A>G Thr35Ala
M0008223 LJLNLEBP_00018 12350 3 Skin 0.02 protein_coding synonymous_variant LOW 63A>G Leu21Leu
M0008224 LJLNLEBP_00018 12386 3 Skin 0.02 protein_coding synonymous_variant LOW 27C>T Cys9Cys
M0008225 LJLNLEBP_00018 12404 3 Skin 0.02 protein_coding synonymous_variant LOW 9G>A Val3Val
M0008226 LJLNLEBP_00019 12523 6 Skin 0.04 protein_coding synonymous_variant LOW 831T>C His277His
M0008227 LJLNLEBP_00019 12538 6 Skin 0.04 protein_coding synonymous_variant LOW 816C>T Cys272Cys
M0008228 LJLNLEBP_00019 12568 6 Skin 0.04 protein_coding synonymous_variant LOW 786T>C Ala262Ala
M0008229 LJLNLEBP_00019 12796 3 Skin 0.02 protein_coding synonymous_variant LOW 558A>G Ala186Ala
M0008230 LJLNLEBP_00019 12817 3 Skin 0.02 protein_coding synonymous_variant LOW 537A>G Ser179Ser
M0008231 LJLNLEBP_00019 12846 3 Skin 0.02 protein_coding missense_variant MODERATE 508C>T Arg170Cys
M0008232 LJLNLEBP_00019 12859 3 Skin 0.02 protein_coding synonymous_variant LOW 495A>C Val165Val
M0008233 LJLNLEBP_00019 12994 3 Skin 0.02 protein_coding synonymous_variant LOW 360G>C Leu120Leu
M0008234 LJLNLEBP_00019 13036 3 Skin 0.02 protein_coding synonymous_variant LOW 318G>C Leu106Leu
M0008235 LJLNLEBP_00019 13272 3 Skin 0.02 protein_coding missense_variant MODERATE 82A>G Ile28Val
M0008236 LJLNLEBP_00020 13726 3 Skin 0.02 protein_coding synonymous_variant LOW 297C>T Ser99Ser
M0008237 LJLNLEBP_00020 13758 3 Skin 0.02 protein_coding missense_variant MODERATE 265A>G Asn89Asp
M0008238 LJLNLEBP_00020 13770 3 Skin 0.02 protein_coding missense_variant MODERATE 253A>G Ser85Gly
M0008239 LJLNLEBP_00020 13798 3 Skin 0.02 protein_coding synonymous_variant LOW 225G>A Glu75Glu
M0008240 LJLNLEBP_00020 13801 3 Skin 0.02 protein_coding synonymous_variant LOW 222C>T Asn74Asn
M0008241 LJLNLEBP_00020 13819 3 Skin 0.02 protein_coding synonymous_variant LOW 204A>G Pro68Pro
M0008242 LJLNLEBP_00001 198 7 Skin 0.04 protein_coding synonymous_variant LOW 99T>C Ile33Ile
M0008243 LJLNLEBP_00001 204 7 Skin 0.04 protein_coding synonymous_variant LOW 105C>G Thr35Thr
M0008244 LJLNLEBP_00001 330 4 Skin 0.02 protein_coding synonymous_variant LOW 231C>T Ile77Ile
M0008245 LJLNLEBP_00001 425 6 Skin 0.04 protein_coding missense_variant MODERATE 326G>A Gly109Asp
M0008246 LJLNLEBP_00001 705 6 Skin 0.04 protein_coding synonymous_variant LOW 606C>T Pro202Pro
M0008247 LJLNLEBP_00002 1149 8 Skin 0.05 protein_coding synonymous_variant LOW 756C>A Ile252Ile
M0008248 LJLNLEBP_00002 1172 8 Skin 0.05 protein_coding missense_variant MODERATE 733T>C Ser245Pro
M0008249 LJLNLEBP_00002 1180 8 Skin 0.05 protein_coding missense_variant MODERATE 725G>A Ser242Asn
M0008250 LJLNLEBP_00002 1359 7 Skin 0.04 protein_coding synonymous_variant LOW 546A>G Gln182Gln
M0008251 LJLNLEBP_00002 1682 7 Skin 0.04 protein_coding missense_variant MODERATE 223T>A Ser75Thr
M0008252 LJLNLEBP_00002 1733 6 Skin 0.04 protein_coding missense_variant MODERATE 172T>C Ser58Pro
M0008253 LJLNLEBP_00003 3237 6 Skin 0.04 protein_coding synonymous_variant LOW 1020G>A Pro340Pro
M0008254 LJLNLEBP_00003 3450 3 Skin 0.02 protein_coding synonymous_variant LOW 1233C>T Gly411Gly
M0008255 LJLNLEBP_00003 3456 3 Skin 0.02 protein_coding synonymous_variant LOW 1239T>C Ile413Ile
M0008256 LJLNLEBP_00002 3537 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -1633T>C None
M0008257 LJLNLEBP_00004 3709 5 Skin 0.03 protein_coding synonymous_variant LOW 171T>G Ala57Ala
M0008258 LJLNLEBP_00004 3733 5 Skin 0.03 protein_coding synonymous_variant LOW 195C>T Asn65Asn
M0008259 LJLNLEBP_00004 3751 5 Skin 0.03 protein_coding synonymous_variant LOW 213G>A Arg71Arg
M0008260 LJLNLEBP_00004 3834 5 Skin 0.03 protein_coding missense_variant MODERATE 296T>C Val99Ala
M0008261 LJLNLEBP_00004 4022 6 Skin 0.04 protein_coding synonymous_variant LOW 484C>T Leu162Leu
M0008262 LJLNLEBP_00004 4030 6 Skin 0.04 protein_coding synonymous_variant LOW 492G>A Ala164Ala
M0008263 LJLNLEBP_00004 4056 6 Skin 0.04 protein_coding missense_variant MODERATE 518T>C Val173Ala
M0008264 LJLNLEBP_00004 4075 6 Skin 0.04 protein_coding synonymous_variant LOW 537T>C His179His
M0008265 LJLNLEBP_00004 4081 6 Skin 0.04 protein_coding synonymous_variant LOW 543C>T Asn181Asn
M0008266 LJLNLEBP_00004 4117 6 Skin 0.04 protein_coding synonymous_variant LOW 579C>T Cys193Cys
M0008267 LJLNLEBP_00010 7216 3 Skin 0.02 protein_coding stop_gained HIGH 139C>T Arg47*
M0008268 LJLNLEBP_00025 19087 3 Skin 0.02 protein_coding missense_variant MODERATE 1840C>T Arg614Cys
M0008269 LJLNLEBP_00020 13923 3 Skin 0.02 protein_coding missense_variant MODERATE 100C>T Pro34Ser
M0008270 LJLNLEBP_00002 6629 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4725C>T None
M0008271 LJLNLEBP_00002 5419 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3515G>A None
M0008272 LJLNLEBP_00011 7453 3 Skin 0.02 protein_coding missense_variant MODERATE 101C>T Ala34Val
M0008273 LJLNLEBP_00004 4174 4 Skin 0.02 protein_coding synonymous_variant LOW 636C>T Pro212Pro
M0008274 LJLNLEBP_00004 4256 3 Skin 0.02 protein_coding stop_gained HIGH 718C>T Gln240*
M0008275 LJLNLEBP_00005 4308 3 Skin 0.02 protein_coding synonymous_variant LOW 48G>A Thr16Thr
M0008276 LJLNLEBP_00015 9682 3 Skin 0.02 protein_coding missense_variant MODERATE 491C>T Pro164Leu
M0008277 LJLNLEBP_00025 20762 3 Skin 0.02 protein_coding synonymous_variant LOW 165T>C Leu55Leu
M0008278 LJLNLEBP_00019 12513 4 Skin 0.02 protein_coding missense_variant MODERATE 841A>G Asn281Asp
M0008279 LJLNLEBP_00019 12594 4 Skin 0.02 protein_coding missense_variant MODERATE 760A>G Ile254Val
M0008280 LJLNLEBP_00015 10346 3 Skin 0.02 protein_coding synonymous_variant LOW 1155T>C Pro385Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term