Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1615
  Reference Plasmid   1111525849481795_bin.12__k141_188378
  Reference Plasmid Size   10390
  Reference Plasmid GC Content   0.61
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0008527 DAFODGHL_00001 1680 12 Skin 0.46 protein_coding synonymous_variant LOW 1392A>G Gln464Gln
M0008528 DAFODGHL_00001 1798 12 Skin 0.46 protein_coding missense_variant MODERATE 1510G>A Ala504Thr
M0008529 DAFODGHL_00001 1963 13 Skin 0.50 protein_coding missense_variant MODERATE 1675T>C Trp559Arg
M0008530 DAFODGHL_00001 1966 13 Skin 0.50 protein_coding missense_variant MODERATE 1678C>G Arg560Gly
M0008531 DAFODGHL_00001 1972 12 Skin 0.46 protein_coding missense_variant MODERATE 1684C>T Leu562Phe
M0008532 DAFODGHL_00001 1987 12 Skin 0.46 protein_coding missense_variant MODERATE 1699A>G Thr567Ala
M0008533 DAFODGHL_00001 1996 12 Skin 0.46 protein_coding missense_variant MODERATE 1708C>G Arg570Gly
M0008534 DAFODGHL_00001 1999 12 Skin 0.46 protein_coding missense_variant MODERATE 1711A>G Thr571Ala
M0008535 DAFODGHL_00001 2179 15 Skin 0.58 protein_coding missense_variant MODERATE 1891G>A Val631Ile
M0008536 DAFODGHL_00001 2182 15 Skin 0.58 protein_coding missense_variant MODERATE 1894G>T Gly632Cys
M0008537 DAFODGHL_00001 2209 18 Skin 0.69 protein_coding synonymous_variant LOW 1921T>C Leu641Leu
M0008538 DAFODGHL_00001 2221 18 Skin 0.69 protein_coding missense_variant MODERATE 1933A>G Lys645Glu
M0008539 DAFODGHL_00003 2251 18 Skin 0.69 protein_coding upstream_gene_variant MODIFIER -791T>G None
M0008540 DAFODGHL_00003 2257 17 Skin 0.65 protein_coding upstream_gene_variant MODIFIER -785A>C None
M0008541 DAFODGHL_00003 2299 8 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -743T>C None
M0008542 DAFODGHL_00003 2391 13 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -651G>A None
M0008543 DAFODGHL_00003 2392 13 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -650A>G None
M0008544 DAFODGHL_00003 2394 14 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -648C>T None
M0008545 DAFODGHL_00003 2409 12 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -633A>C None
M0008546 DAFODGHL_00003 2413 12 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -629A>G None
M0008547 DAFODGHL_00003 2421 12 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -621A>T None
M0008548 DAFODGHL_00003 2423 13 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -619A>G None
M0008549 DAFODGHL_00003 2427 12 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -615A>G None
M0008550 DAFODGHL_00003 2431 13 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -611G>T None
M0008551 DAFODGHL_00003 2488 7 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -554T>C None
M0008552 DAFODGHL_00002 2566 7 Skin 0.27 protein_coding synonymous_variant LOW 402T>G Pro134Pro
M0008553 DAFODGHL_00002 2574 7 Skin 0.27 protein_coding missense_variant MODERATE 394C>T Pro132Ser
M0008554 DAFODGHL_00003 3263 15 Skin 0.58 protein_coding synonymous_variant LOW 222C>T Asp74Asp
M0008555 DAFODGHL_00003 3291 17 Skin 0.65 protein_coding missense_variant MODERATE 250C>T Leu84Phe
M0008556 DAFODGHL_00003 3300 19 Skin 0.73 protein_coding missense_variant MODERATE 259G>A Ala87Thr
M0008557 DAFODGHL_00003 3333 16 Skin 0.62 protein_coding missense_variant MODERATE 292C>T Pro98Ser
M0008558 DAFODGHL_00003 3335 16 Skin 0.62 protein_coding synonymous_variant LOW 294T>C Pro98Pro
M0008559 DAFODGHL_00003 3416 6 Skin 0.23 protein_coding synonymous_variant LOW 375G>A Arg125Arg
M0008560 DAFODGHL_00003 3593 15 Skin 0.58 protein_coding missense_variant MODERATE 552A>G Ile184Met
M0008561 DAFODGHL_00003 3598 12 Skin 0.46 protein_coding missense_variant MODERATE 557T>G Met186Arg
M0008562 DAFODGHL_00004 4367 20 Skin 0.77 protein_coding synonymous_variant LOW 450C>T Arg150Arg
M0008563 DAFODGHL_00002 4685 8 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -1718A>C None
M0008564 DAFODGHL_00002 4699 14 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -1732C>T None
M0008565 DAFODGHL_00002 4729 15 Skin 0.58 protein_coding upstream_gene_variant MODIFIER -1762T>C None
M0008566 DAFODGHL_00005 4952 15 Skin 0.58 protein_coding synonymous_variant LOW 849G>C Leu283Leu
M0008567 DAFODGHL_00005 4955 12 Skin 0.46 protein_coding synonymous_variant LOW 846A>G Gly282Gly
M0008568 DAFODGHL_00005 5042 20 Skin 0.77 protein_coding synonymous_variant LOW 759T>C Asn253Asn
M0008569 DAFODGHL_00005 5105 12 Skin 0.46 protein_coding synonymous_variant LOW 696G>A Thr232Thr
M0008570 DAFODGHL_00005 5111 17 Skin 0.65 protein_coding synonymous_variant LOW 690C>T Ile230Ile
M0008571 DAFODGHL_00005 5279 17 Skin 0.65 protein_coding synonymous_variant LOW 522T>C Val174Val
M0008572 DAFODGHL_00005 5282 19 Skin 0.73 protein_coding synonymous_variant LOW 519T>C Arg173Arg
M0008573 DAFODGHL_00005 5488 8 Skin 0.31 protein_coding synonymous_variant LOW 313T>C Leu105Leu
M0008574 DAFODGHL_00005 5508 13 Skin 0.50 protein_coding missense_variant MODERATE 293G>A Arg98Lys
M0008575 DAFODGHL_00005 5513 16 Skin 0.62 protein_coding synonymous_variant LOW 288A>G Pro96Pro
M0008576 DAFODGHL_00005 5524 15 Skin 0.58 protein_coding synonymous_variant LOW 277C>T Leu93Leu
M0008577 DAFODGHL_00005 5525 14 Skin 0.54 protein_coding synonymous_variant LOW 276A>G Lys92Lys
M0008578 DAFODGHL_00005 5528 14 Skin 0.54 protein_coding missense_variant MODERATE 273A>C Glu91Asp
M0008579 DAFODGHL_00005 5529 8 Skin 0.31 protein_coding missense_variant MODERATE 272A>G Glu91Gly
M0008580 DAFODGHL_00005 5530 14 Skin 0.54 protein_coding missense_variant MODERATE 271G>A Glu91Lys
M0008581 DAFODGHL_00005 5540 9 Skin 0.35 protein_coding synonymous_variant LOW 261C>T Ile87Ile
M0008582 DAFODGHL_00005 5570 8 Skin 0.31 protein_coding synonymous_variant LOW 231T>C Ser77Ser
M0008583 DAFODGHL_00005 5612 8 Skin 0.31 protein_coding synonymous_variant LOW 189G>A Ser63Ser
M0008584 DAFODGHL_00005 5623 14 Skin 0.54 protein_coding missense_variant MODERATE 178A>G Thr60Ala
M0008585 DAFODGHL_00005 5636 13 Skin 0.50 protein_coding synonymous_variant LOW 165T>C Gly55Gly
M0008586 DAFODGHL_00005 5648 9 Skin 0.35 protein_coding synonymous_variant LOW 153C>T Leu51Leu
M0008587 DAFODGHL_00005 5650 9 Skin 0.35 protein_coding missense_variant MODERATE 151C>A Leu51Ile
M0008588 DAFODGHL_00005 5653 13 Skin 0.50 protein_coding missense_variant MODERATE 148G>T Val50Leu
M0008589 DAFODGHL_00005 5660 6 Skin 0.23 protein_coding synonymous_variant LOW 141A>G Gly47Gly
M0008590 DAFODGHL_00005 5671 4 Skin 0.15 protein_coding missense_variant MODERATE 130G>A Val44Ile
M0008591 DAFODGHL_00005 5672 11 Skin 0.42 protein_coding synonymous_variant LOW 129T>C Ser43Ser
M0008592 DAFODGHL_00005 5682 10 Skin 0.38 protein_coding missense_variant MODERATE 119C>T Thr40Ile
M0008593 DAFODGHL_00005 5697 9 Skin 0.35 protein_coding missense_variant MODERATE 104T>C Val35Ala
M0008594 DAFODGHL_00005 5699 9 Skin 0.35 protein_coding synonymous_variant LOW 102C>T Ser34Ser
M0008595 DAFODGHL_00005 5702 14 Skin 0.54 protein_coding synonymous_variant LOW 99G>A Pro33Pro
M0008596 DAFODGHL_00005 5780 8 Skin 0.31 protein_coding synonymous_variant LOW 21C>T Thr7Thr
M0008597 DAFODGHL_00002 5855 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2888T>A None
M0008598 DAFODGHL_00002 5909 8 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -2942C>T None
M0008599 DAFODGHL_00002 5935 7 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -2968G>A None
M0008600 DAFODGHL_00002 5946 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2979C>T None
M0008601 DAFODGHL_00002 5956 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2989C>T None
M0008602 DAFODGHL_00002 5986 7 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -3019C>T None
M0008603 DAFODGHL_00002 6182 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -3215C>T None
M0008604 DAFODGHL_00002 6216 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -3249C>T None
M0008605 DAFODGHL_00002 6229 11 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -3262C>T None
M0008606 DAFODGHL_00002 6233 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -3266T>C None
M0008607 DAFODGHL_00002 6254 13 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3287C>T None
M0008608 DAFODGHL_00002 6262 13 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3295C>A None
M0008609 DAFODGHL_00002 6263 13 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3296T>C None
M0008610 DAFODGHL_00002 6265 13 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3298C>T None
M0008611 DAFODGHL_00001 388 9 Skin 0.35 protein_coding missense_variant MODERATE 100A>G Asn34Asp
M0008612 DAFODGHL_00001 469 5 Skin 0.19 protein_coding missense_variant MODERATE 181A>G Asn61Asp
M0008613 DAFODGHL_00001 526 8 Skin 0.31 protein_coding missense_variant MODERATE 238A>G Arg80Gly
M0008614 DAFODGHL_00001 532 10 Skin 0.38 protein_coding missense_variant MODERATE 244G>A Ala82Thr
M0008615 DAFODGHL_00001 536 3 Skin 0.12 protein_coding missense_variant MODERATE 248T>A Leu83His
M0008616 DAFODGHL_00001 556 3 Skin 0.12 protein_coding missense_variant MODERATE 268C>G Pro90Ala
M0008617 DAFODGHL_00001 562 3 Skin 0.12 protein_coding missense_variant MODERATE 274A>G Thr92Ala
M0008618 DAFODGHL_00001 577 3 Skin 0.12 protein_coding missense_variant MODERATE 289C>T Pro97Ser
M0008619 DAFODGHL_00001 619 9 Skin 0.35 protein_coding missense_variant MODERATE 331A>G Thr111Ala
M0008620 DAFODGHL_00001 655 10 Skin 0.38 protein_coding missense_variant MODERATE 367G>A Ala123Thr
M0008621 DAFODGHL_00001 691 12 Skin 0.46 protein_coding missense_variant MODERATE 403A>G Asn135Asp
M0008622 DAFODGHL_00001 769 10 Skin 0.38 protein_coding missense_variant MODERATE 481G>A Ala161Thr
M0008623 DAFODGHL_00001 787 14 Skin 0.54 protein_coding missense_variant MODERATE 499A>C Lys167Gln
M0008624 DAFODGHL_00001 808 8 Skin 0.31 protein_coding missense_variant MODERATE 520A>G Lys174Glu
M0008625 DAFODGHL_00001 847 11 Skin 0.42 protein_coding missense_variant MODERATE 559C>G Arg187Gly
M0008626 DAFODGHL_00001 859 4 Skin 0.15 protein_coding missense_variant MODERATE 571G>A Asp191Asn
M0008627 DAFODGHL_00001 889 10 Skin 0.38 protein_coding missense_variant MODERATE 601T>C Ser201Pro
M0008628 DAFODGHL_00001 901 4 Skin 0.15 protein_coding stop_gained HIGH 613C>T Arg205*
M0008629 DAFODGHL_00001 916 4 Skin 0.15 protein_coding missense_variant MODERATE 628G>C Val210Leu
M0008630 DAFODGHL_00001 950 15 Skin 0.58 protein_coding missense_variant MODERATE 662A>G Asp221Gly
M0008631 DAFODGHL_00001 1105 3 Skin 0.12 protein_coding missense_variant MODERATE 817G>A Ala273Thr
M0008632 DAFODGHL_00001 1108 3 Skin 0.12 protein_coding missense_variant MODERATE 820T>C Phe274Leu
M0008633 DAFODGHL_00001 1177 6 Skin 0.23 protein_coding missense_variant MODERATE 889C>T Leu297Phe
M0008634 DAFODGHL_00001 1192 6 Skin 0.23 protein_coding missense_variant MODERATE 904A>G Thr302Ala
M0008635 DAFODGHL_00001 1195 6 Skin 0.23 protein_coding missense_variant MODERATE 907A>G Thr303Ala
M0008636 DAFODGHL_00001 1198 6 Skin 0.23 protein_coding missense_variant MODERATE 910A>G Thr304Ala
M0008637 DAFODGHL_00001 1324 9 Skin 0.35 protein_coding missense_variant MODERATE 1036C>A Gln346Lys
M0008638 DAFODGHL_00001 1470 18 Skin 0.69 protein_coding synonymous_variant LOW 1182A>G Glu394Glu
M0008639 DAFODGHL_00001 1591 7 Skin 0.27 protein_coding missense_variant MODERATE 1303G>A Ala435Thr
M0008640 DAFODGHL_00001 1642 6 Skin 0.23 protein_coding missense_variant MODERATE 1354A>G Thr452Ala
M0008641 DAFODGHL_00001 1654 6 Skin 0.23 protein_coding missense_variant MODERATE 1366A>G Ile456Val
M0008642 DAFODGHL_00001 1666 6 Skin 0.23 protein_coding missense_variant MODERATE 1378A>G Asn460Asp
M0008643 DAFODGHL_00001 2212 13 Skin 0.50 protein_coding missense_variant MODERATE 1924C>A Pro642Thr
M0008644 DAFODGHL_00002 3025 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -58C>G None
M0008645 DAFODGHL_00002 3026 8 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -59G>T None
M0008646 DAFODGHL_00003 3076 8 Skin 0.31 protein_coding missense_variant MODERATE 35C>A Ala12Asp
M0008647 DAFODGHL_00003 3100 3 Skin 0.12 protein_coding missense_variant MODERATE 59C>T Pro20Leu
M0008648 DAFODGHL_00003 3101 4 Skin 0.15 protein_coding synonymous_variant LOW 60T>C Pro20Pro
M0008649 DAFODGHL_00003 3214 8 Skin 0.31 protein_coding missense_variant MODERATE 173C>T Ala58Val
M0008650 DAFODGHL_00003 3527 6 Skin 0.23 protein_coding synonymous_variant LOW 486A>G Ala162Ala
M0008651 DAFODGHL_00003 3552 4 Skin 0.15 protein_coding missense_variant MODERATE 511T>C Tyr171His
M0008652 DAFODGHL_00002 3615 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -648C>A None
M0008653 DAFODGHL_00002 3621 14 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -654A>T None
M0008654 DAFODGHL_00002 3633 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -666C>T None
M0008655 DAFODGHL_00002 3639 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -672G>A None
M0008656 DAFODGHL_00002 3688 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -721G>C None
M0008657 DAFODGHL_00002 3731 10 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -764T>C None
M0008658 DAFODGHL_00002 3735 8 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -768C>T None
M0008659 DAFODGHL_00004 4181 5 Skin 0.19 protein_coding synonymous_variant LOW 264C>T Arg88Arg
M0008660 DAFODGHL_00004 4187 18 Skin 0.69 protein_coding synonymous_variant LOW 270C>T Asn90Asn
M0008661 DAFODGHL_00004 4196 14 Skin 0.54 protein_coding synonymous_variant LOW 279T>C Ser93Ser
M0008662 DAFODGHL_00004 4217 12 Skin 0.46 protein_coding synonymous_variant LOW 300G>A Glu100Glu
M0008663 DAFODGHL_00004 4618 10 Skin 0.38 protein_coding missense_variant MODERATE 701G>A Ser234Asn
M0008664 DAFODGHL_00005 5240 16 Skin 0.62 protein_coding synonymous_variant LOW 561T>C Val187Val
M0008665 DAFODGHL_00005 5246 15 Skin 0.58 protein_coding synonymous_variant LOW 555C>T Phe185Phe
M0008666 DAFODGHL_00005 5362 10 Skin 0.38 protein_coding synonymous_variant LOW 439C>T Leu147Leu
M0008667 DAFODGHL_00005 5432 7 Skin 0.27 protein_coding synonymous_variant LOW 369A>G Lys123Lys
M0008668 DAFODGHL_00005 5438 7 Skin 0.27 protein_coding synonymous_variant LOW 363C>T Leu121Leu
M0008669 DAFODGHL_00005 5441 7 Skin 0.27 protein_coding synonymous_variant LOW 360A>C Ala120Ala
M0008670 DAFODGHL_00005 5450 7 Skin 0.27 protein_coding synonymous_variant LOW 351T>G Val117Val
M0008671 DAFODGHL_00005 5516 4 Skin 0.15 protein_coding synonymous_variant LOW 285T>C Val95Val
M0008672 DAFODGHL_00005 5606 4 Skin 0.15 protein_coding synonymous_variant LOW 195G>A Gly65Gly
M0008673 DAFODGHL_00005 5615 6 Skin 0.23 protein_coding synonymous_variant LOW 186G>A Arg62Arg
M0008674 DAFODGHL_00002 5804 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2837G>C None
M0008675 DAFODGHL_00002 5991 7 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -3024G>A None
M0008676 DAFODGHL_00006 6374 3 Skin 0.12 protein_coding missense_variant MODERATE 2050A>G Ile684Val
M0008677 DAFODGHL_00006 6384 3 Skin 0.12 protein_coding synonymous_variant LOW 2040G>A Leu680Leu
M0008678 DAFODGHL_00006 6494 8 Skin 0.31 protein_coding synonymous_variant LOW 1930T>C Leu644Leu
M0008679 DAFODGHL_00006 6693 6 Skin 0.23 protein_coding synonymous_variant LOW 1731C>T Arg577Arg
M0008680 DAFODGHL_00001 1090 3 Skin 0.12 protein_coding missense_variant MODERATE 802A>G Thr268Ala
M0008681 DAFODGHL_00001 1120 3 Skin 0.12 protein_coding missense_variant MODERATE 832G>T Gly278Cys
M0008682 DAFODGHL_00001 1121 3 Skin 0.12 protein_coding missense_variant MODERATE 833G>A Gly278Asp
M0008683 DAFODGHL_00001 1126 3 Skin 0.12 protein_coding missense_variant MODERATE 838G>A Ala280Thr
M0008684 DAFODGHL_00001 1546 7 Skin 0.27 protein_coding synonymous_variant LOW 1258T>C Leu420Leu
M0008685 DAFODGHL_00001 1774 4 Skin 0.15 protein_coding missense_variant MODERATE 1486T>C Phe496Leu
M0008686 DAFODGHL_00001 1792 3 Skin 0.12 protein_coding missense_variant MODERATE 1504C>A His502Asn
M0008687 DAFODGHL_00001 1834 6 Skin 0.23 protein_coding missense_variant MODERATE 1546A>G Ser516Gly
M0008688 DAFODGHL_00001 2161 11 Skin 0.42 protein_coding missense_variant MODERATE 1873A>G Thr625Ala
M0008689 DAFODGHL_00005 5188 10 Skin 0.38 protein_coding synonymous_variant LOW 613C>T Leu205Leu
M0008690 DAFODGHL_00005 5417 6 Skin 0.23 protein_coding synonymous_variant LOW 384C>T Ala128Ala
M0008691 DAFODGHL_00005 5423 6 Skin 0.23 protein_coding synonymous_variant LOW 378T>C Leu126Leu
M0008692 DAFODGHL_00005 5426 4 Skin 0.15 protein_coding synonymous_variant LOW 375C>A Val125Val
M0008693 DAFODGHL_00005 5681 5 Skin 0.19 protein_coding synonymous_variant LOW 120C>T Thr40Thr
M0008694 DAFODGHL_00002 6110 10 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3143T>C None
M0008695 DAFODGHL_00002 6116 7 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -3149A>G None
M0008696 DAFODGHL_00002 6303 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3336G>T None
M0008697 DAFODGHL_00002 6313 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3346T>C None
M0008698 DAFODGHL_00002 6314 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3347A>G None
M0008699 DAFODGHL_00002 6315 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3348C>T None
M0008700 DAFODGHL_00006 6450 5 Skin 0.19 protein_coding synonymous_variant LOW 1974C>T Ile658Ile
M0008701 DAFODGHL_00006 6543 6 Skin 0.23 protein_coding synonymous_variant LOW 1881T>C His627His
M0008702 DAFODGHL_00006 6546 6 Skin 0.23 protein_coding synonymous_variant LOW 1878G>A Gly626Gly
M0008703 DAFODGHL_00006 6978 3 Skin 0.12 protein_coding synonymous_variant LOW 1446T>C Tyr482Tyr
M0008704 DAFODGHL_00006 7161 4 Skin 0.15 protein_coding synonymous_variant LOW 1263T>C Arg421Arg
M0008705 DAFODGHL_00006 7164 4 Skin 0.15 protein_coding synonymous_variant LOW 1260C>T Ile420Ile
M0008706 DAFODGHL_00006 7173 4 Skin 0.15 protein_coding synonymous_variant LOW 1251G>A Glu417Glu
M0008707 DAFODGHL_00006 7443 4 Skin 0.15 protein_coding synonymous_variant LOW 981C>T Gly327Gly
M0008708 DAFODGHL_00006 7449 3 Skin 0.12 protein_coding synonymous_variant LOW 975C>T Gly325Gly
M0008709 DAFODGHL_00006 7455 3 Skin 0.12 protein_coding synonymous_variant LOW 969A>G Gly323Gly
M0008710 DAFODGHL_00006 7494 4 Skin 0.15 protein_coding synonymous_variant LOW 930A>G Ser310Ser
M0008711 DAFODGHL_00006 7497 4 Skin 0.15 protein_coding synonymous_variant LOW 927G>T Gly309Gly
M0008712 DAFODGHL_00006 7500 4 Skin 0.15 protein_coding synonymous_variant LOW 924C>T Ile308Ile
M0008713 DAFODGHL_00006 7559 3 Skin 0.12 protein_coding synonymous_variant LOW 865C>T Leu289Leu
M0008714 DAFODGHL_00006 7585 3 Skin 0.12 protein_coding missense_variant MODERATE 839C>G Thr280Arg
M0008715 DAFODGHL_00006 7950 4 Skin 0.15 protein_coding synonymous_variant LOW 474A>C Gly158Gly
M0008716 DAFODGHL_00006 7998 4 Skin 0.15 protein_coding synonymous_variant LOW 426C>T Arg142Arg
M0008717 DAFODGHL_00006 8009 4 Skin 0.15 protein_coding synonymous_variant LOW 415T>C Leu139Leu
M0008718 DAFODGHL_00006 8192 4 Skin 0.15 protein_coding synonymous_variant LOW 232T>C Leu78Leu
M0008719 DAFODGHL_00006 8268 3 Skin 0.12 protein_coding synonymous_variant LOW 156T>C Thr52Thr
M0008720 DAFODGHL_00006 8271 3 Skin 0.12 protein_coding synonymous_variant LOW 153T>C Gly51Gly
M0008721 DAFODGHL_00006 8397 3 Skin 0.12 protein_coding synonymous_variant LOW 27T>C Arg9Arg
M0008722 DAFODGHL_00007 8603 3 Skin 0.12 protein_coding synonymous_variant LOW 486G>A Val162Val
M0008723 DAFODGHL_00001 1327 3 Skin 0.12 protein_coding missense_variant MODERATE 1039C>T Leu347Phe
M0008724 DAFODGHL_00003 3420 6 Skin 0.23 protein_coding stop_gained HIGH 379G>T Glu127*
M0008725 DAFODGHL_00002 3703 10 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -736A>C None
M0008726 DAFODGHL_00004 4232 10 Skin 0.38 protein_coding synonymous_variant LOW 315G>A Glu105Glu
M0008727 DAFODGHL_00002 5818 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2851C>T None
M0008728 DAFODGHL_00002 6060 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -3093C>T None
M0008729 DAFODGHL_00002 6087 6 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3120T>C None
M0008730 DAFODGHL_00001 709 5 Skin 0.19 protein_coding missense_variant MODERATE 421C>T Leu141Phe
M0008731 DAFODGHL_00001 757 4 Skin 0.15 protein_coding missense_variant MODERATE 469G>C Val157Leu
M0008732 DAFODGHL_00001 1044 7 Skin 0.27 protein_coding missense_variant MODERATE 756T>G His252Gln
M0008733 DAFODGHL_00001 1729 10 Skin 0.38 protein_coding missense_variant MODERATE 1441C>T Leu481Phe
M0008734 DAFODGHL_00005 5420 3 Skin 0.12 protein_coding synonymous_variant LOW 381C>T Asp127Asp
M0008735 DAFODGHL_00001 115 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -174A>C None
M0008736 DAFODGHL_00001 493 3 Skin 0.12 protein_coding missense_variant MODERATE 205C>T Arg69Cys
M0008737 DAFODGHL_00003 3056 5 Skin 0.19 protein_coding synonymous_variant LOW 15A>G Arg5Arg
M0008738 DAFODGHL_00003 3072 5 Skin 0.19 protein_coding missense_variant MODERATE 31T>C Cys11Arg
M0008739 DAFODGHL_00003 3362 4 Skin 0.15 protein_coding synonymous_variant LOW 321T>C Arg107Arg
M0008740 DAFODGHL_00003 3374 4 Skin 0.15 protein_coding synonymous_variant LOW 333T>C His111His
M0008741 DAFODGHL_00001 214 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -75G>A None
M0008742 DAFODGHL_00001 259 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -30C>G None
M0008743 DAFODGHL_00001 262 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -27T>G None
M0008744 DAFODGHL_00001 268 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -21C>T None
M0008745 DAFODGHL_00001 529 7 Skin 0.27 protein_coding missense_variant MODERATE 241G>A Ala81Thr
M0008746 DAFODGHL_00001 646 3 Skin 0.12 protein_coding missense_variant MODERATE 358T>C Phe120Leu
M0008747 DAFODGHL_00001 952 5 Skin 0.19 protein_coding missense_variant MODERATE 664T>G Ser222Ala
M0008748 DAFODGHL_00001 955 5 Skin 0.19 protein_coding missense_variant MODERATE 667T>C Tyr223His
M0008749 DAFODGHL_00001 1825 3 Skin 0.12 protein_coding missense_variant MODERATE 1537C>T Pro513Ser
M0008750 DAFODGHL_00001 1867 5 Skin 0.19 protein_coding missense_variant MODERATE 1579T>C Phe527Leu
M0008751 DAFODGHL_00001 1894 6 Skin 0.23 protein_coding missense_variant MODERATE 1606T>C Tyr536His
M0008752 DAFODGHL_00001 1726 3 Skin 0.12 protein_coding missense_variant MODERATE 1438G>C Gly480Arg
M0008753 DAFODGHL_00001 1807 3 Skin 0.12 protein_coding missense_variant MODERATE 1519G>A Val507Ile
M0008754 DAFODGHL_00001 1809 3 Skin 0.12 protein_coding synonymous_variant LOW 1521A>G Val507Val
M0008755 DAFODGHL_00001 1900 5 Skin 0.19 protein_coding missense_variant MODERATE 1612T>C Trp538Arg
M0008756 DAFODGHL_00001 1921 6 Skin 0.23 protein_coding missense_variant MODERATE 1633G>C Gly545Arg
M0008757 DAFODGHL_00001 1935 5 Skin 0.19 protein_coding synonymous_variant LOW 1647T>C Asp549Asp
M0008758 DAFODGHL_00003 2269 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -773G>A None
M0008759 DAFODGHL_00004 4582 6 Skin 0.23 protein_coding missense_variant MODERATE 665A>G Glu222Gly
M0008760 DAFODGHL_00004 4592 8 Skin 0.31 protein_coding synonymous_variant LOW 675G>A Gly225Gly
M0008761 DAFODGHL_00001 1858 4 Skin 0.15 protein_coding missense_variant MODERATE 1570G>A Ala524Thr
M0008762 DAFODGHL_00004 3948 5 Skin 0.19 protein_coding synonymous_variant LOW 31T>C Leu11Leu
M0008763 DAFODGHL_00004 3951 5 Skin 0.19 protein_coding missense_variant MODERATE 34C>T Arg12Cys
M0008764 DAFODGHL_00004 4352 5 Skin 0.19 protein_coding synonymous_variant LOW 435G>A Glu145Glu
M0008765 DAFODGHL_00004 4355 5 Skin 0.19 protein_coding synonymous_variant LOW 438C>T Leu146Leu
M0008766 DAFODGHL_00004 4358 5 Skin 0.19 protein_coding synonymous_variant LOW 441C>T Pro147Pro
M0008767 DAFODGHL_00004 4609 4 Skin 0.15 protein_coding missense_variant MODERATE 692G>A Gly231Asp
M0008768 DAFODGHL_00004 4612 4 Skin 0.15 protein_coding missense_variant MODERATE 695C>A Thr232Asn
M0008769 DAFODGHL_00004 4406 3 Skin 0.12 protein_coding synonymous_variant LOW 489C>T Ile163Ile
M0008770 DAFODGHL_00005 4847 3 Skin 0.12 protein_coding synonymous_variant LOW 954G>T Ser318Ser
M0008771 DAFODGHL_00005 4859 3 Skin 0.12 protein_coding synonymous_variant LOW 942T>G Ser314Ser
M0008772 DAFODGHL_00005 4943 3 Skin 0.12 protein_coding synonymous_variant LOW 858G>A Lys286Lys
M0008773 DAFODGHL_00005 5023 3 Skin 0.12 protein_coding synonymous_variant LOW 778T>C Leu260Leu
M0008774 DAFODGHL_00005 5183 6 Skin 0.23 protein_coding synonymous_variant LOW 618C>T Gly206Gly
M0008775 DAFODGHL_00005 5189 6 Skin 0.23 protein_coding synonymous_variant LOW 612C>T Ala204Ala
M0008776 DAFODGHL_00005 5192 6 Skin 0.23 protein_coding synonymous_variant LOW 609T>C Val203Val
M0008777 DAFODGHL_00005 5231 6 Skin 0.23 protein_coding synonymous_variant LOW 570A>T Gly190Gly
M0008778 DAFODGHL_00001 1216 3 Skin 0.12 protein_coding missense_variant MODERATE 928G>A Ala310Thr
M0008779 DAFODGHL_00001 2074 3 Skin 0.12 protein_coding missense_variant MODERATE 1786A>G Thr596Ala
M0008780 DAFODGHL_00003 3080 4 Skin 0.15 protein_coding synonymous_variant LOW 39T>C Leu13Leu
M0008781 DAFODGHL_00004 3944 4 Skin 0.15 protein_coding synonymous_variant LOW 27G>A Ser9Ser
M0008782 DAFODGHL_00002 4800 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -1833G>T None
M0008783 DAFODGHL_00005 4898 3 Skin 0.12 protein_coding synonymous_variant LOW 903C>T Gly301Gly
M0008784 DAFODGHL_00005 5216 5 Skin 0.19 protein_coding synonymous_variant LOW 585G>A Ala195Ala
M0008785 DAFODGHL_00005 5219 5 Skin 0.19 protein_coding synonymous_variant LOW 582T>C Leu194Leu
M0008786 DAFODGHL_00005 5225 5 Skin 0.19 protein_coding synonymous_variant LOW 576G>A Lys192Lys
M0008787 DAFODGHL_00002 3671 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -704G>A None
M0008788 DAFODGHL_00005 5072 4 Skin 0.15 protein_coding synonymous_variant LOW 729G>A Gln243Gln
M0008789 DAFODGHL_00005 5767 3 Skin 0.12 protein_coding missense_variant MODERATE 34A>G Ile12Val
M0008790 DAFODGHL_00002 3773 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -806T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term