Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1622
  Reference Plasmid   1111525849481828_bin.31__k141_756194
  Reference Plasmid Size   7853
  Reference Plasmid GC Content   0.34
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0008800 CJPPFBAH_00003 2290 3 Skin 1.00 protein_coding synonymous_variant LOW 591G>A Glu197Glu
M0008801 CJPPFBAH_00003 2302 3 Skin 1.00 protein_coding synonymous_variant LOW 603A>G Gly201Gly
M0008802 CJPPFBAH_00003 2308 3 Skin 1.00 protein_coding synonymous_variant LOW 609C>A Thr203Thr
M0008803 CJPPFBAH_00003 2339 3 Skin 1.00 protein_coding missense_variant MODERATE 640T>C Cys214Arg
M0008804 CJPPFBAH_00003 2425 3 Skin 1.00 protein_coding missense_variant MODERATE 726C>G Phe242Leu
M0008805 CJPPFBAH_00003 2459 3 Skin 1.00 protein_coding missense_variant MODERATE 760T>C Phe254Leu
M0008806 CJPPFBAH_00003 2486 3 Skin 1.00 protein_coding missense_variant MODERATE 787A>G Ile263Val
M0008807 CJPPFBAH_00003 2517 3 Skin 1.00 protein_coding missense_variant MODERATE 818G>A Cys273Tyr
M0008808 CJPPFBAH_00004 2570 3 Skin 1.00 protein_coding synonymous_variant LOW 60A>C Ile20Ile
M0008809 CJPPFBAH_00004 2676 3 Skin 1.00 protein_coding missense_variant MODERATE 166T>G Ser56Ala
M0008810 CJPPFBAH_00004 2717 3 Skin 1.00 protein_coding synonymous_variant LOW 207T>G Thr69Thr
M0008811 CJPPFBAH_00004 2720 3 Skin 1.00 protein_coding synonymous_variant LOW 210C>T Phe70Phe
M0008812 CJPPFBAH_00004 2723 3 Skin 1.00 protein_coding synonymous_variant LOW 213T>C Pro71Pro
M0008813 CJPPFBAH_00004 2729 3 Skin 1.00 protein_coding synonymous_variant LOW 219T>C Ala73Ala
M0008814 CJPPFBAH_00004 2747 3 Skin 1.00 protein_coding synonymous_variant LOW 237A>G Val79Val
M0008815 CJPPFBAH_00004 2789 3 Skin 1.00 protein_coding missense_variant MODERATE 279G>T Met93Ile
M0008816 CJPPFBAH_00004 2885 3 Skin 1.00 protein_coding synonymous_variant LOW 375T>C Ile125Ile
M0008817 CJPPFBAH_00005 2938 3 Skin 1.00 protein_coding synonymous_variant LOW 54G>A Gly18Gly
M0008818 CJPPFBAH_00005 3223 3 Skin 1.00 protein_coding synonymous_variant LOW 339T>C Tyr113Tyr
M0008819 CJPPFBAH_00005 3226 3 Skin 1.00 protein_coding synonymous_variant LOW 342C>T Phe114Phe
M0008820 CJPPFBAH_00005 3234 3 Skin 1.00 protein_coding missense_variant MODERATE 350G>A Arg117Lys
M0008821 CJPPFBAH_00005 3415 3 Skin 1.00 protein_coding synonymous_variant LOW 531T>C Leu177Leu
M0008822 CJPPFBAH_00005 3527 3 Skin 1.00 protein_coding missense_variant MODERATE 643T>G Leu215Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term