Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1638
  Reference Plasmid   1111525849483071_bin.20__k141_372452
  Reference Plasmid Size   3290
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0140994 JKNDFJHB_00001 299 4 Vaginal 1.00 protein_coding synonymous_variant LOW 264C>T Gly88Gly
M0140995 JKNDFJHB_00001 308 4 Vaginal 1.00 protein_coding synonymous_variant LOW 273T>C Asn91Asn
M0140996 JKNDFJHB_00001 339 4 Vaginal 1.00 protein_coding synonymous_variant LOW 304C>T Leu102Leu
M0140997 JKNDFJHB_00001 359 4 Vaginal 1.00 protein_coding synonymous_variant LOW 324A>G Gln108Gln
M0140998 JKNDFJHB_00001 374 4 Vaginal 1.00 protein_coding synonymous_variant LOW 339C>T Ala113Ala
M0140999 JKNDFJHB_00001 392 4 Vaginal 1.00 protein_coding synonymous_variant LOW 357C>T Asn119Asn
M0141000 JKNDFJHB_00001 410 4 Vaginal 1.00 protein_coding synonymous_variant LOW 375T>A Ala125Ala
M0141001 JKNDFJHB_00002 772 4 Vaginal 1.00 protein_coding synonymous_variant LOW 267T>C Ser89Ser
M0141002 JKNDFJHB_00002 983 4 Vaginal 1.00 protein_coding synonymous_variant LOW 478T>C Leu160Leu
M0141003 JKNDFJHB_00002 1273 3 Vaginal 0.75 protein_coding synonymous_variant LOW 768T>C Gly256Gly
M0141004 JKNDFJHB_00002 1510 3 Vaginal 0.75 protein_coding synonymous_variant LOW 1005A>T Ser335Ser
M0141005 JKNDFJHB_00002 1639 3 Vaginal 0.75 protein_coding synonymous_variant LOW 1134T>C Arg378Arg
M0141006 JKNDFJHB_00002 1645 3 Vaginal 0.75 protein_coding synonymous_variant LOW 1140A>G Glu380Glu
M0141007 JKNDFJHB_00002 1657 4 Vaginal 1.00 protein_coding synonymous_variant LOW 1152C>T Arg384Arg
M0141008 JKNDFJHB_00002 1180 3 Vaginal 0.75 protein_coding synonymous_variant LOW 675A>G Pro225Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term