Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1641
  Reference Plasmid   1111525849483863_bin.14__k141_715107
  Reference Plasmid Size   5798
  Reference Plasmid GC Content   0.61
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0009571 APOAKEPD_00001 516 8 Skin 0.35 protein_coding missense_variant MODERATE 46G>C Gly16Arg
M0009572 APOAKEPD_00001 524 9 Skin 0.39 protein_coding synonymous_variant LOW 54T>G Leu18Leu
M0009573 APOAKEPD_00001 576 9 Skin 0.39 protein_coding missense_variant MODERATE 106C>A Arg36Ser
M0009574 APOAKEPD_00001 615 8 Skin 0.35 protein_coding missense_variant MODERATE 145G>T Gly49Trp
M0009575 APOAKEPD_00001 696 8 Skin 0.35 protein_coding missense_variant MODERATE 226G>A Val76Ile
M0009576 APOAKEPD_00001 711 9 Skin 0.39 protein_coding missense_variant MODERATE 241T>C Cys81Arg
M0009577 APOAKEPD_00001 739 8 Skin 0.35 protein_coding missense_variant MODERATE 269G>A Arg90His
M0009578 APOAKEPD_00001 747 8 Skin 0.35 protein_coding missense_variant MODERATE 277G>C Val93Leu
M0009579 APOAKEPD_00001 749 8 Skin 0.35 protein_coding synonymous_variant LOW 279C>G Val93Val
M0009580 APOAKEPD_00001 761 9 Skin 0.39 protein_coding synonymous_variant LOW 291G>T Leu97Leu
M0009581 APOAKEPD_00001 796 8 Skin 0.35 protein_coding missense_variant MODERATE 326T>C Ile109Thr
M0009582 APOAKEPD_00001 831 9 Skin 0.39 protein_coding missense_variant MODERATE 361A>G Ile121Val
M0009583 APOAKEPD_00002 845 9 Skin 0.39 protein_coding missense_variant MODERATE 1235C>G Thr412Arg
M0009584 APOAKEPD_00002 880 9 Skin 0.39 protein_coding synonymous_variant LOW 1200G>A Leu400Leu
M0009585 APOAKEPD_00002 891 9 Skin 0.39 protein_coding missense_variant MODERATE 1189A>G Thr397Ala
M0009586 APOAKEPD_00002 933 9 Skin 0.39 protein_coding missense_variant MODERATE 1147G>A Ala383Thr
M0009587 APOAKEPD_00002 964 9 Skin 0.39 protein_coding synonymous_variant LOW 1116A>G Leu372Leu
M0009588 APOAKEPD_00002 991 9 Skin 0.39 protein_coding synonymous_variant LOW 1089G>A Leu363Leu
M0009589 APOAKEPD_00002 1003 9 Skin 0.39 protein_coding synonymous_variant LOW 1077C>T Ala359Ala
M0009590 APOAKEPD_00002 1024 9 Skin 0.39 protein_coding synonymous_variant LOW 1056G>A Val352Val
M0009591 APOAKEPD_00002 1081 9 Skin 0.39 protein_coding missense_variant MODERATE 999G>A Met333Ile
M0009592 APOAKEPD_00002 1102 9 Skin 0.39 protein_coding synonymous_variant LOW 978A>G Thr326Thr
M0009593 APOAKEPD_00002 1142 9 Skin 0.39 protein_coding missense_variant MODERATE 938C>T Ala313Val
M0009594 APOAKEPD_00002 1162 9 Skin 0.39 protein_coding synonymous_variant LOW 918C>T Ile306Ile
M0009595 APOAKEPD_00002 1207 10 Skin 0.43 protein_coding synonymous_variant LOW 873A>T Gly291Gly
M0009596 APOAKEPD_00002 1216 10 Skin 0.43 protein_coding synonymous_variant LOW 864T>C Val288Val
M0009597 APOAKEPD_00002 1255 10 Skin 0.43 protein_coding synonymous_variant LOW 825C>T Asn275Asn
M0009598 APOAKEPD_00002 1270 10 Skin 0.43 protein_coding synonymous_variant LOW 810G>A Arg270Arg
M0009599 APOAKEPD_00002 1279 10 Skin 0.43 protein_coding synonymous_variant LOW 801C>T Thr267Thr
M0009600 APOAKEPD_00002 1345 8 Skin 0.35 protein_coding synonymous_variant LOW 735G>T Ser245Ser
M0009601 APOAKEPD_00002 1351 8 Skin 0.35 protein_coding synonymous_variant LOW 729G>C Val243Val
M0009602 APOAKEPD_00002 1354 8 Skin 0.35 protein_coding synonymous_variant LOW 726C>T Phe242Phe
M0009603 APOAKEPD_00002 1372 10 Skin 0.43 protein_coding synonymous_variant LOW 708A>G Leu236Leu
M0009604 APOAKEPD_00002 1384 8 Skin 0.35 protein_coding synonymous_variant LOW 696C>T Phe232Phe
M0009605 APOAKEPD_00002 1402 8 Skin 0.35 protein_coding synonymous_variant LOW 678A>G Pro226Pro
M0009606 APOAKEPD_00002 1433 8 Skin 0.35 protein_coding missense_variant MODERATE 647T>C Ile216Thr
M0009607 APOAKEPD_00002 1438 10 Skin 0.43 protein_coding synonymous_variant LOW 642C>A Pro214Pro
M0009608 APOAKEPD_00002 1450 8 Skin 0.35 protein_coding synonymous_variant LOW 630G>A Ser210Ser
M0009609 APOAKEPD_00002 1458 8 Skin 0.35 protein_coding missense_variant MODERATE 622C>A His208Asn
M0009610 APOAKEPD_00002 1459 8 Skin 0.35 protein_coding synonymous_variant LOW 621T>C Arg207Arg
M0009611 APOAKEPD_00002 1465 8 Skin 0.35 protein_coding synonymous_variant LOW 615G>A Pro205Pro
M0009612 APOAKEPD_00002 1486 8 Skin 0.35 protein_coding synonymous_variant LOW 594A>G Val198Val
M0009613 APOAKEPD_00002 1528 10 Skin 0.43 protein_coding synonymous_variant LOW 552T>C Leu184Leu
M0009614 APOAKEPD_00002 1555 8 Skin 0.35 protein_coding missense_variant MODERATE 525C>G Phe175Leu
M0009615 APOAKEPD_00002 1560 8 Skin 0.35 protein_coding missense_variant MODERATE 520G>A Ala174Thr
M0009616 APOAKEPD_00002 1585 8 Skin 0.35 protein_coding synonymous_variant LOW 495A>G Gln165Gln
M0009617 APOAKEPD_00002 1597 10 Skin 0.43 protein_coding synonymous_variant LOW 483C>T Tyr161Tyr
M0009618 APOAKEPD_00002 1615 10 Skin 0.43 protein_coding synonymous_variant LOW 465G>A Ala155Ala
M0009619 APOAKEPD_00002 1621 8 Skin 0.35 protein_coding synonymous_variant LOW 459T>C Val153Val
M0009620 APOAKEPD_00002 1634 8 Skin 0.35 protein_coding missense_variant MODERATE 446C>T Thr149Ile
M0009621 APOAKEPD_00002 1635 8 Skin 0.35 protein_coding missense_variant MODERATE 445A>G Thr149Ala
M0009622 APOAKEPD_00002 1641 8 Skin 0.35 protein_coding missense_variant MODERATE 439G>A Asp147Asn
M0009623 APOAKEPD_00002 1647 10 Skin 0.43 protein_coding missense_variant MODERATE 433A>G Ile145Val
M0009624 APOAKEPD_00002 1690 8 Skin 0.35 protein_coding synonymous_variant LOW 390T>C Leu130Leu
M0009625 APOAKEPD_00002 1714 8 Skin 0.35 protein_coding synonymous_variant LOW 366G>A Ala122Ala
M0009626 APOAKEPD_00002 1732 8 Skin 0.35 protein_coding synonymous_variant LOW 348T>C Pro116Pro
M0009627 APOAKEPD_00002 1738 8 Skin 0.35 protein_coding synonymous_variant LOW 342C>T Arg114Arg
M0009628 APOAKEPD_00002 1762 10 Skin 0.43 protein_coding synonymous_variant LOW 318T>C Ala106Ala
M0009629 APOAKEPD_00002 1786 9 Skin 0.39 protein_coding synonymous_variant LOW 294G>A Gly98Gly
M0009630 APOAKEPD_00002 1823 10 Skin 0.43 protein_coding missense_variant MODERATE 257A>G Gln86Arg
M0009631 APOAKEPD_00002 1831 9 Skin 0.39 protein_coding synonymous_variant LOW 249T>C Asp83Asp
M0009632 APOAKEPD_00002 1834 9 Skin 0.39 protein_coding synonymous_variant LOW 246A>G Ser82Ser
M0009633 APOAKEPD_00002 1862 10 Skin 0.43 protein_coding missense_variant MODERATE 218T>G Ile73Ser
M0009634 APOAKEPD_00002 1912 9 Skin 0.39 protein_coding synonymous_variant LOW 168A>G Lys56Lys
M0009635 APOAKEPD_00002 1928 10 Skin 0.43 protein_coding missense_variant MODERATE 152C>T Ala51Val
M0009636 APOAKEPD_00002 1950 9 Skin 0.39 protein_coding synonymous_variant LOW 130T>C Leu44Leu
M0009637 APOAKEPD_00002 1951 10 Skin 0.43 protein_coding synonymous_variant LOW 129A>G Leu43Leu
M0009638 APOAKEPD_00002 1977 9 Skin 0.39 protein_coding missense_variant MODERATE 103A>G Thr35Ala
M0009639 APOAKEPD_00002 1984 9 Skin 0.39 protein_coding synonymous_variant LOW 96G>A Gly32Gly
M0009640 APOAKEPD_00002 1987 10 Skin 0.43 protein_coding missense_variant MODERATE 93T>G Phe31Leu
M0009641 APOAKEPD_00002 2017 9 Skin 0.39 protein_coding synonymous_variant LOW 63C>T Arg21Arg
M0009642 APOAKEPD_00002 2029 9 Skin 0.39 protein_coding synonymous_variant LOW 51C>T Ala17Ala
M0009643 APOAKEPD_00002 2039 9 Skin 0.39 protein_coding missense_variant MODERATE 41A>G Lys14Arg
M0009644 APOAKEPD_00002 2045 9 Skin 0.39 protein_coding missense_variant MODERATE 35G>A Arg12Gln
M0009645 APOAKEPD_00002 2072 8 Skin 0.35 protein_coding missense_variant MODERATE 8C>T Thr3Ile
M0009646 APOAKEPD_00002 2101 9 Skin 0.39 protein_coding upstream_gene_variant MODIFIER -22T>C None
M0009647 APOAKEPD_00002 2354 11 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -275A>G None
M0009648 APOAKEPD_00002 2399 9 Skin 0.39 protein_coding upstream_gene_variant MODIFIER -320G>A None
M0009649 APOAKEPD_00002 2414 10 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -335A>T None
M0009650 APOAKEPD_00002 2420 10 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -341A>G None
M0009651 APOAKEPD_00002 2442 10 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -363A>G None
M0009652 APOAKEPD_00002 2444 10 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -365A>C None
M0009653 APOAKEPD_00002 2447 10 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -368G>C None
M0009654 APOAKEPD_00003 2456 10 Skin 0.43 protein_coding missense_variant MODERATE 9A>C Glu3Asp
M0009655 APOAKEPD_00003 2462 10 Skin 0.43 protein_coding synonymous_variant LOW 15A>G Leu5Leu
M0009656 APOAKEPD_00003 2479 11 Skin 0.48 protein_coding missense_variant MODERATE 32A>G Lys11Arg
M0009657 APOAKEPD_00003 2480 11 Skin 0.48 protein_coding synonymous_variant LOW 33G>A Lys11Lys
M0009658 APOAKEPD_00003 2481 11 Skin 0.48 protein_coding missense_variant MODERATE 34G>A Val12Met
M0009659 APOAKEPD_00003 2501 11 Skin 0.48 protein_coding synonymous_variant LOW 54T>C Asp18Asp
M0009660 APOAKEPD_00003 2510 11 Skin 0.48 protein_coding synonymous_variant LOW 63C>T Leu21Leu
M0009661 APOAKEPD_00003 2519 10 Skin 0.43 protein_coding synonymous_variant LOW 72A>G Gly24Gly
M0009662 APOAKEPD_00003 2564 11 Skin 0.48 protein_coding synonymous_variant LOW 117C>T Pro39Pro
M0009663 APOAKEPD_00003 2570 10 Skin 0.43 protein_coding synonymous_variant LOW 123C>T Thr41Thr
M0009664 APOAKEPD_00003 2669 11 Skin 0.48 protein_coding synonymous_variant LOW 222A>C Val74Val
M0009665 APOAKEPD_00003 2714 11 Skin 0.48 protein_coding synonymous_variant LOW 267G>C Val89Val
M0009666 APOAKEPD_00003 2942 11 Skin 0.48 protein_coding synonymous_variant LOW 495T>C Ser165Ser
M0009667 APOAKEPD_00003 2993 12 Skin 0.52 protein_coding synonymous_variant LOW 546A>C Ala182Ala
M0009668 APOAKEPD_00003 3018 12 Skin 0.52 protein_coding missense_variant MODERATE 571A>G Thr191Ala
M0009669 APOAKEPD_00003 3047 9 Skin 0.39 protein_coding synonymous_variant LOW 600G>A Glu200Glu
M0009670 APOAKEPD_00003 3172 11 Skin 0.48 protein_coding missense_variant MODERATE 725T>C Ile242Thr
M0009671 APOAKEPD_00003 3197 12 Skin 0.52 protein_coding synonymous_variant LOW 750T>C Pro250Pro
M0009672 APOAKEPD_00003 3204 12 Skin 0.52 protein_coding synonymous_variant LOW 757T>C Leu253Leu
M0009673 APOAKEPD_00003 3227 11 Skin 0.48 protein_coding synonymous_variant LOW 780T>C Phe260Phe
M0009674 APOAKEPD_00003 3240 10 Skin 0.43 protein_coding missense_variant MODERATE 793T>A Ser265Thr
M0009675 APOAKEPD_00002 3801 10 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -1722C>T None
M0009676 APOAKEPD_00002 3820 9 Skin 0.39 protein_coding upstream_gene_variant MODIFIER -1741T>C None
M0009677 APOAKEPD_00002 3821 9 Skin 0.39 protein_coding upstream_gene_variant MODIFIER -1742A>G None
M0009678 APOAKEPD_00002 3825 9 Skin 0.39 protein_coding upstream_gene_variant MODIFIER -1746C>G None
M0009679 APOAKEPD_00002 3833 10 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -1754C>A None
M0009680 APOAKEPD_00002 3836 10 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -1757T>C None
M0009681 APOAKEPD_00002 3843 10 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -1764A>G None
M0009682 APOAKEPD_00002 3881 9 Skin 0.39 protein_coding upstream_gene_variant MODIFIER -1802C>T None
M0009683 APOAKEPD_00005 3917 9 Skin 0.39 protein_coding synonymous_variant LOW 1020C>T Asp340Asp
M0009684 APOAKEPD_00005 3929 10 Skin 0.43 protein_coding synonymous_variant LOW 1008C>T Arg336Arg
M0009685 APOAKEPD_00005 4010 9 Skin 0.39 protein_coding synonymous_variant LOW 927T>C Asn309Asn
M0009686 APOAKEPD_00005 4025 9 Skin 0.39 protein_coding synonymous_variant LOW 912G>A Pro304Pro
M0009687 APOAKEPD_00005 4031 9 Skin 0.39 protein_coding synonymous_variant LOW 906T>C Ala302Ala
M0009688 APOAKEPD_00005 4049 9 Skin 0.39 protein_coding synonymous_variant LOW 888C>T Ala296Ala
M0009689 APOAKEPD_00005 4082 9 Skin 0.39 protein_coding synonymous_variant LOW 855A>G Glu285Glu
M0009690 APOAKEPD_00005 4207 8 Skin 0.35 protein_coding missense_variant MODERATE 730A>G Ile244Val
M0009691 APOAKEPD_00005 4211 8 Skin 0.35 protein_coding synonymous_variant LOW 726C>T Ser242Ser
M0009692 APOAKEPD_00005 4298 9 Skin 0.39 protein_coding synonymous_variant LOW 639T>C Leu213Leu
M0009693 APOAKEPD_00005 4325 9 Skin 0.39 protein_coding synonymous_variant LOW 612C>T Leu204Leu
M0009694 APOAKEPD_00005 4337 9 Skin 0.39 protein_coding synonymous_variant LOW 600G>A Glu200Glu
M0009695 APOAKEPD_00005 4406 9 Skin 0.39 protein_coding synonymous_variant LOW 531T>C Thr177Thr
M0009696 APOAKEPD_00005 4442 9 Skin 0.39 protein_coding synonymous_variant LOW 495T>G Pro165Pro
M0009697 APOAKEPD_00005 4457 9 Skin 0.39 protein_coding synonymous_variant LOW 480A>G Gly160Gly
M0009698 APOAKEPD_00005 4500 9 Skin 0.39 protein_coding missense_variant MODERATE 437G>A Arg146His
M0009699 APOAKEPD_00005 4506 9 Skin 0.39 protein_coding missense_variant MODERATE 431G>A Arg144Lys
M0009700 APOAKEPD_00005 4523 9 Skin 0.39 protein_coding synonymous_variant LOW 414T>C Thr138Thr
M0009701 APOAKEPD_00005 4649 10 Skin 0.43 protein_coding synonymous_variant LOW 288G>A Glu96Glu
M0009702 APOAKEPD_00005 4827 9 Skin 0.39 protein_coding missense_variant MODERATE 110C>T Thr37Ile
M0009703 APOAKEPD_00005 4828 9 Skin 0.39 protein_coding missense_variant MODERATE 109A>G Thr37Ala
M0009704 APOAKEPD_00005 4907 9 Skin 0.39 protein_coding synonymous_variant LOW 30T>C Thr10Thr
M0009705 APOAKEPD_00005 4918 9 Skin 0.39 protein_coding missense_variant MODERATE 19G>A Ala7Thr
M0009706 APOAKEPD_00002 5011 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -2932A>C None
M0009707 APOAKEPD_00002 5014 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -2935C>A None
M0009708 APOAKEPD_00002 5036 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -2957C>T None
M0009709 APOAKEPD_00002 5045 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -2966A>G None
M0009710 APOAKEPD_00002 5046 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -2967A>G None
M0009711 APOAKEPD_00002 5047 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -2968A>G None
M0009712 APOAKEPD_00006 5096 7 Skin 0.30 protein_coding synonymous_variant LOW 30T>C Ala10Ala
M0009713 APOAKEPD_00006 5097 7 Skin 0.30 protein_coding missense_variant MODERATE 31T>C Ser11Pro
M0009714 APOAKEPD_00006 5141 7 Skin 0.30 protein_coding synonymous_variant LOW 75G>C Leu25Leu
M0009715 APOAKEPD_00006 5148 7 Skin 0.30 protein_coding missense_variant MODERATE 82A>T Ser28Cys
M0009716 APOAKEPD_00006 5176 8 Skin 0.35 protein_coding missense_variant MODERATE 110T>C Ile37Thr
M0009717 APOAKEPD_00006 5213 7 Skin 0.30 protein_coding synonymous_variant LOW 147T>C His49His
M0009718 APOAKEPD_00006 5272 7 Skin 0.30 protein_coding missense_variant MODERATE 206T>C Phe69Ser
M0009719 APOAKEPD_00006 5275 7 Skin 0.30 protein_coding missense_variant MODERATE 209G>A Ser70Asn
M0009720 APOAKEPD_00006 5305 7 Skin 0.30 protein_coding missense_variant MODERATE 239G>T Arg80Leu
M0009721 APOAKEPD_00006 5372 7 Skin 0.30 protein_coding synonymous_variant LOW 306C>T Ala102Ala
M0009722 APOAKEPD_00006 5377 7 Skin 0.30 protein_coding missense_variant MODERATE 311C>T Ala104Val
M0009723 APOAKEPD_00006 5395 7 Skin 0.30 protein_coding missense_variant MODERATE 329T>C Val110Ala
M0009724 APOAKEPD_00006 5405 7 Skin 0.30 protein_coding missense_variant MODERATE 339A>G Ile113Met
M0009725 APOAKEPD_00007 5473 6 Skin 0.26 protein_coding missense_variant MODERATE 52A>G Thr18Ala
M0009726 APOAKEPD_00007 5488 6 Skin 0.26 protein_coding missense_variant MODERATE 67T>G Ser23Ala
M0009727 APOAKEPD_00007 5494 6 Skin 0.26 protein_coding missense_variant MODERATE 73G>A Ala25Thr
M0009728 APOAKEPD_00007 5496 6 Skin 0.26 protein_coding synonymous_variant LOW 75T>C Ala25Ala
M0009729 APOAKEPD_00007 5498 6 Skin 0.26 protein_coding missense_variant MODERATE 77C>T Ser26Phe
M0009730 APOAKEPD_00007 5546 6 Skin 0.26 protein_coding missense_variant MODERATE 125A>G Asp42Gly
M0009731 APOAKEPD_00007 5547 6 Skin 0.26 protein_coding missense_variant MODERATE 126C>A Asp42Glu
M0009732 APOAKEPD_00007 5581 6 Skin 0.26 protein_coding missense_variant MODERATE 160A>G Ile54Val
M0009733 APOAKEPD_00007 5594 6 Skin 0.26 protein_coding missense_variant MODERATE 173T>C Val58Ala
M0009734 APOAKEPD_00007 5631 6 Skin 0.26 protein_coding synonymous_variant LOW 210T>C Pro70Pro
M0009735 APOAKEPD_00007 5651 6 Skin 0.26 protein_coding missense_variant MODERATE 230C>T Thr77Met
M0009736 APOAKEPD_00007 5653 6 Skin 0.26 protein_coding missense_variant MODERATE 232G>A Ala78Thr
M0009737 APOAKEPD_00007 5654 6 Skin 0.26 protein_coding missense_variant MODERATE 233C>T Ala78Val
M0009738 APOAKEPD_00007 5657 6 Skin 0.26 protein_coding stop_lost&splice_region_variant HIGH 236G>C Ter79Serext*?
M0009739 APOAKEPD_00002 3335 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -1256T>C None
M0009740 APOAKEPD_00001 275 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -196C>T None
M0009741 APOAKEPD_00001 381 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -90A>G None
M0009742 APOAKEPD_00001 409 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -62G>A None
M0009743 APOAKEPD_00001 421 7 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -50A>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
APOAKEPD_00005 Arsenic (As) 74.3 6e-132 42 348 0.8771 0.9505 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term