Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1662
  Reference Plasmid   1111525849486260_bin.12__k141_123871
  Reference Plasmid Size   15295
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0010280 EIFOBLLL_00005 8041 3 Skin 0.27 protein_coding synonymous_variant LOW 720A>G Glu240Glu
M0010281 EIFOBLLL_00005 8470 3 Skin 0.27 protein_coding synonymous_variant LOW 1149C>T Arg383Arg
M0010282 EIFOBLLL_00005 8524 3 Skin 0.27 protein_coding synonymous_variant LOW 1203T>C Ile401Ile
M0010283 EIFOBLLL_00006 9159 3 Skin 0.27 protein_coding synonymous_variant LOW 426G>C Pro142Pro
M0010284 EIFOBLLL_00006 9921 3 Skin 0.27 protein_coding synonymous_variant LOW 1188C>A Pro396Pro
M0010285 EIFOBLLL_00007 10396 3 Skin 0.27 protein_coding missense_variant MODERATE 14T>G Leu5Arg
M0010286 EIFOBLLL_00007 10646 3 Skin 0.27 protein_coding synonymous_variant LOW 264C>G Thr88Thr
M0010287 EIFOBLLL_00007 10994 3 Skin 0.27 protein_coding synonymous_variant LOW 612T>G Gly204Gly
M0010288 EIFOBLLL_00007 11567 4 Skin 0.36 protein_coding synonymous_variant LOW 1185A>G Lys395Lys
M0010289 EIFOBLLL_00007 11570 4 Skin 0.36 protein_coding synonymous_variant LOW 1188A>G Gly396Gly
M0010290 EIFOBLLL_00007 11837 7 Skin 0.64 protein_coding synonymous_variant LOW 1455T>C Asp485Asp
M0010291 EIFOBLLL_00007 11959 7 Skin 0.64 protein_coding missense_variant MODERATE 1577C>A Thr526Lys
M0010292 EIFOBLLL_00007 12473 4 Skin 0.36 protein_coding synonymous_variant LOW 2091A>G Val697Val
M0010293 EIFOBLLL_00007 13043 5 Skin 0.45 protein_coding synonymous_variant LOW 2661A>C Gly887Gly
M0010294 EIFOBLLL_00007 12263 3 Skin 0.27 protein_coding synonymous_variant LOW 1881T>C Ser627Ser
M0010295 EIFOBLLL_00007 12404 3 Skin 0.27 protein_coding synonymous_variant LOW 2022G>T Val674Val
M0010296 EIFOBLLL_00007 12413 3 Skin 0.27 protein_coding synonymous_variant LOW 2031T>C Ile677Ile
M0010297 EIFOBLLL_00007 12929 5 Skin 0.45 protein_coding synonymous_variant LOW 2547A>G Lys849Lys
M0010298 EIFOBLLL_00007 13093 6 Skin 0.55 protein_coding missense_variant MODERATE 2711C>T Ala904Val
M0010299 EIFOBLLL_00007 13449 6 Skin 0.55 protein_coding missense_variant MODERATE 3067G>T Ala1023Ser
M0010300 EIFOBLLL_00007 13704 3 Skin 0.27 protein_coding synonymous_variant LOW 3322T>C Leu1108Leu
M0010301 EIFOBLLL_00007 13781 3 Skin 0.27 protein_coding synonymous_variant LOW 3399G>A Ala1133Ala
M0010302 EIFOBLLL_00007 13784 3 Skin 0.27 protein_coding synonymous_variant LOW 3402G>T Arg1134Arg
M0010303 EIFOBLLL_00007 13787 3 Skin 0.27 protein_coding synonymous_variant LOW 3405C>G Ser1135Ser
M0010304 EIFOBLLL_00007 13796 3 Skin 0.27 protein_coding synonymous_variant LOW 3414T>C Phe1138Phe
M0010305 EIFOBLLL_00007 13814 3 Skin 0.27 protein_coding synonymous_variant LOW 3432C>G Gly1144Gly
M0010306 EIFOBLLL_00007 13835 3 Skin 0.27 protein_coding synonymous_variant LOW 3453C>G Arg1151Arg
M0010307 EIFOBLLL_00007 13844 3 Skin 0.27 protein_coding synonymous_variant LOW 3462C>T Leu1154Leu
M0010308 EIFOBLLL_00008 13878 3 Skin 0.27 protein_coding missense_variant MODERATE 8A>G Glu3Gly
M0010309 EIFOBLLL_00008 13897 4 Skin 0.36 protein_coding synonymous_variant LOW 27G>A Gly9Gly
M0010310 EIFOBLLL_00008 13900 5 Skin 0.45 protein_coding synonymous_variant LOW 30G>T Leu10Leu
M0010311 EIFOBLLL_00008 13921 4 Skin 0.36 protein_coding synonymous_variant LOW 51T>C His17His
M0010312 EIFOBLLL_00008 13942 5 Skin 0.45 protein_coding synonymous_variant LOW 72A>C Gly24Gly
M0010313 EIFOBLLL_00008 13943 5 Skin 0.45 protein_coding missense_variant MODERATE 73G>T Val25Leu
M0010314 EIFOBLLL_00008 13948 4 Skin 0.36 protein_coding synonymous_variant LOW 78T>C Gly26Gly
M0010315 EIFOBLLL_00008 14326 5 Skin 0.45 protein_coding synonymous_variant LOW 456A>C Gly152Gly
M0010316 EIFOBLLL_00009 14507 4 Skin 0.36 protein_coding synonymous_variant LOW 78A>C Pro26Pro
M0010317 EIFOBLLL_00009 14525 4 Skin 0.36 protein_coding synonymous_variant LOW 96T>C Val32Val
M0010318 EIFOBLLL_00009 14573 4 Skin 0.36 protein_coding synonymous_variant LOW 144T>G Ala48Ala
M0010319 EIFOBLLL_00009 14807 3 Skin 0.27 protein_coding synonymous_variant LOW 378G>A Gln126Gln
M0010320 EIFOBLLL_00009 14855 4 Skin 0.36 protein_coding synonymous_variant LOW 426C>T Val142Val
M0010321 EIFOBLLL_00009 14909 3 Skin 0.27 protein_coding synonymous_variant LOW 480T>G Ala160Ala
M0010322 EIFOBLLL_00009 14933 3 Skin 0.27 protein_coding synonymous_variant LOW 504G>A Glu168Glu
M0010323 EIFOBLLL_00009 14939 3 Skin 0.27 protein_coding synonymous_variant LOW 510T>C Asp170Asp
M0010324 EIFOBLLL_00009 15233 6 Skin 0.55 protein_coding synonymous_variant LOW 804T>C Gly268Gly
M0010325 EIFOBLLL_00007 12333 3 Skin 0.27 protein_coding synonymous_variant LOW 1951C>T Leu651Leu
M0010326 EIFOBLLL_00008 13990 4 Skin 0.36 protein_coding synonymous_variant LOW 120A>G Glu40Glu
M0010327 EIFOBLLL_00007 13253 3 Skin 0.27 protein_coding synonymous_variant LOW 2871A>C Arg957Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term