Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1667
  Reference Plasmid   1111525849486442_bin.27__k141_108770
  Reference Plasmid Size   28167
  Reference Plasmid GC Content   0.55
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0010341 ENPKCINK_00018 14048 3 Skin 0.09 protein_coding synonymous_variant LOW 198A>G Gly66Gly
M0010342 ENPKCINK_00014 14405 7 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4384G>A None
M0010343 ENPKCINK_00019 15526 3 Skin 0.09 protein_coding synonymous_variant LOW 87G>A Thr29Thr
M0010344 ENPKCINK_00019 15544 3 Skin 0.09 protein_coding synonymous_variant LOW 69G>A Leu23Leu
M0010345 ENPKCINK_00019 15568 3 Skin 0.09 protein_coding synonymous_variant LOW 45T>A Ala15Ala
M0010346 ENPKCINK_00019 15575 3 Skin 0.09 protein_coding missense_variant MODERATE 38T>C Val13Ala
M0010347 ENPKCINK_00028 24092 7 Skin 0.21 protein_coding synonymous_variant LOW 396G>A Leu132Leu
M0010348 ENPKCINK_00023 24517 6 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4386G>A None
M0010349 ENPKCINK_00030 25665 5 Skin 0.15 protein_coding missense_variant MODERATE 588T>G Phe196Leu
M0010350 ENPKCINK_00030 26082 6 Skin 0.18 protein_coding synonymous_variant LOW 171G>A Glu57Glu
M0010351 ENPKCINK_00031 26432 6 Skin 0.18 protein_coding synonymous_variant LOW 1155G>A Leu385Leu
M0010352 ENPKCINK_00031 26908 8 Skin 0.24 protein_coding synonymous_variant LOW 679C>T Leu227Leu
M0010353 ENPKCINK_00031 27007 7 Skin 0.21 protein_coding missense_variant MODERATE 580A>G Thr194Ala
M0010354 ENPKCINK_00031 27122 4 Skin 0.12 protein_coding synonymous_variant LOW 465A>G Ala155Ala
M0010355 ENPKCINK_00031 27413 5 Skin 0.15 protein_coding synonymous_variant LOW 174G>A Pro58Pro
M0010356 ENPKCINK_00031 27437 6 Skin 0.18 protein_coding synonymous_variant LOW 150C>G Ala50Ala
M0010357 ENPKCINK_00026 27733 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4896T>C None
M0010358 ENPKCINK_00017 12356 3 Skin 0.09 protein_coding missense_variant MODERATE 989G>T Gly330Val
M0010359 ENPKCINK_00017 12600 5 Skin 0.15 protein_coding missense_variant MODERATE 745T>A Leu249Met
M0010360 ENPKCINK_00017 12715 6 Skin 0.18 protein_coding synonymous_variant LOW 630A>G Leu210Leu
M0010361 ENPKCINK_00017 12794 3 Skin 0.09 protein_coding missense_variant MODERATE 551A>G Lys184Arg
M0010362 ENPKCINK_00017 12999 3 Skin 0.09 protein_coding missense_variant MODERATE 346C>A Pro116Thr
M0010363 ENPKCINK_00017 13243 5 Skin 0.15 protein_coding synonymous_variant LOW 102A>T Val34Val
M0010364 ENPKCINK_00018 14186 4 Skin 0.12 protein_coding synonymous_variant LOW 60G>C Arg20Arg
M0010365 ENPKCINK_00018 14237 3 Skin 0.09 protein_coding stop_gained HIGH 9C>G Tyr3*
M0010366 ENPKCINK_00014 14331 4 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4310T>C None
M0010367 ENPKCINK_00019 14578 5 Skin 0.15 protein_coding synonymous_variant LOW 1035C>T Ser345Ser
M0010368 ENPKCINK_00019 14851 4 Skin 0.12 protein_coding synonymous_variant LOW 762C>T Arg254Arg
M0010369 ENPKCINK_00019 15333 3 Skin 0.09 protein_coding missense_variant MODERATE 280T>G Leu94Val
M0010370 ENPKCINK_00019 15253 3 Skin 0.09 protein_coding synonymous_variant LOW 360G>A Gln120Gln
M0010371 ENPKCINK_00019 15263 3 Skin 0.09 protein_coding missense_variant MODERATE 350G>A Arg117Gln
M0010372 ENPKCINK_00020 15840 4 Skin 0.12 protein_coding synonymous_variant LOW 816C>T Ala272Ala
M0010373 ENPKCINK_00020 15876 4 Skin 0.12 protein_coding synonymous_variant LOW 780G>A Arg260Arg
M0010374 ENPKCINK_00020 15903 4 Skin 0.12 protein_coding synonymous_variant LOW 753T>G Leu251Leu
M0010375 ENPKCINK_00020 15906 4 Skin 0.12 protein_coding synonymous_variant LOW 750G>T Gly250Gly
M0010376 ENPKCINK_00020 15944 4 Skin 0.12 protein_coding synonymous_variant LOW 712T>C Leu238Leu
M0010377 ENPKCINK_00020 15978 4 Skin 0.12 protein_coding synonymous_variant LOW 678T>A Gly226Gly
M0010378 ENPKCINK_00020 15987 4 Skin 0.12 protein_coding synonymous_variant LOW 669T>C Arg223Arg
M0010379 ENPKCINK_00020 16061 5 Skin 0.15 protein_coding synonymous_variant LOW 595C>T Leu199Leu
M0010380 ENPKCINK_00020 16449 3 Skin 0.09 protein_coding synonymous_variant LOW 207C>T Arg69Arg
M0010381 ENPKCINK_00020 16451 3 Skin 0.09 protein_coding missense_variant MODERATE 205C>A Arg69Ser
M0010382 ENPKCINK_00021 16978 3 Skin 0.09 protein_coding synonymous_variant LOW 1326A>G Arg442Arg
M0010383 ENPKCINK_00021 17056 6 Skin 0.18 protein_coding synonymous_variant LOW 1248C>T Val416Val
M0010384 ENPKCINK_00021 17647 3 Skin 0.09 protein_coding synonymous_variant LOW 657T>C Thr219Thr
M0010385 ENPKCINK_00021 17977 3 Skin 0.09 protein_coding synonymous_variant LOW 327G>A Ser109Ser
M0010386 ENPKCINK_00023 19448 4 Skin 0.12 protein_coding synonymous_variant LOW 684T>C Arg228Arg
M0010387 ENPKCINK_00023 19580 4 Skin 0.12 protein_coding synonymous_variant LOW 552C>A Ala184Ala
M0010388 ENPKCINK_00023 19603 4 Skin 0.12 protein_coding missense_variant MODERATE 529T>A Phe177Ile
M0010389 ENPKCINK_00023 19607 4 Skin 0.12 protein_coding synonymous_variant LOW 525T>G Gly175Gly
M0010390 ENPKCINK_00023 19658 4 Skin 0.12 protein_coding synonymous_variant LOW 474T>C Phe158Phe
M0010391 ENPKCINK_00023 19682 4 Skin 0.12 protein_coding synonymous_variant LOW 450G>A Leu150Leu
M0010392 ENPKCINK_00010 7708 12 Skin 0.35 protein_coding synonymous_variant LOW 540G>A Ala180Ala
M0010393 ENPKCINK_00015 10456 7 Skin 0.21 protein_coding synonymous_variant LOW 309T>C Ser103Ser
M0010394 ENPKCINK_00009 11078 4 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4038A>T None
M0010395 ENPKCINK_00016 11649 4 Skin 0.12 protein_coding synonymous_variant LOW 567G>A Glu189Glu
M0010396 ENPKCINK_00016 11677 5 Skin 0.15 protein_coding missense_variant MODERATE 595C>A His199Asn
M0010397 ENPKCINK_00003 1674 4 Skin 0.12 protein_coding synonymous_variant LOW 840A>G Ala280Ala
M0010398 ENPKCINK_00003 1677 4 Skin 0.12 protein_coding synonymous_variant LOW 837A>G Ser279Ser
M0010399 ENPKCINK_00003 1692 4 Skin 0.12 protein_coding synonymous_variant LOW 822T>C Gly274Gly
M0010400 ENPKCINK_00003 1926 3 Skin 0.09 protein_coding synonymous_variant LOW 588A>G Glu196Glu
M0010401 ENPKCINK_00003 1998 3 Skin 0.09 protein_coding synonymous_variant LOW 516G>A Arg172Arg
M0010402 ENPKCINK_00001 2796 4 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2565C>T None
M0010403 ENPKCINK_00001 2805 4 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2574A>G None
M0010404 ENPKCINK_00012 9045 9 Skin 0.26 protein_coding missense_variant MODERATE 47T>C Val16Ala
M0010405 ENPKCINK_00016 11949 3 Skin 0.09 protein_coding synonymous_variant LOW 867C>T Asp289Asp
M0010406 ENPKCINK_00016 11958 3 Skin 0.09 protein_coding synonymous_variant LOW 876C>T Pro292Pro
M0010407 ENPKCINK_00016 11964 3 Skin 0.09 protein_coding synonymous_variant LOW 882T>C His294His
M0010408 ENPKCINK_00018 13448 3 Skin 0.09 protein_coding synonymous_variant LOW 798T>G Ala266Ala
M0010409 ENPKCINK_00030 26173 4 Skin 0.12 protein_coding missense_variant MODERATE 80C>T Ser27Leu
M0010410 ENPKCINK_00030 26208 4 Skin 0.12 protein_coding missense_variant MODERATE 45G>C Lys15Asn
M0010411 ENPKCINK_00030 26229 4 Skin 0.12 protein_coding synonymous_variant LOW 24C>T Ser8Ser
M0010412 ENPKCINK_00031 26976 3 Skin 0.09 protein_coding missense_variant MODERATE 611C>T Ala204Val
M0010413 ENPKCINK_00029 24848 4 Skin 0.12 protein_coding synonymous_variant LOW 223T>C Leu75Leu
M0010414 ENPKCINK_00029 24964 4 Skin 0.12 protein_coding synonymous_variant LOW 339G>A Val113Val
M0010415 ENPKCINK_00030 25610 3 Skin 0.09 protein_coding missense_variant MODERATE 643A>T Ser215Cys
M0010416 ENPKCINK_00031 26801 3 Skin 0.09 protein_coding synonymous_variant LOW 786A>G Lys262Lys
M0010417 ENPKCINK_00009 6249 5 Skin 0.15 protein_coding synonymous_variant LOW 792T>C Thr264Thr
M0010418 ENPKCINK_00030 25767 5 Skin 0.15 protein_coding synonymous_variant LOW 486T>C Ser162Ser
M0010419 ENPKCINK_00030 25778 6 Skin 0.18 protein_coding missense_variant MODERATE 475G>T Val159Leu
M0010420 ENPKCINK_00030 25798 6 Skin 0.18 protein_coding missense_variant MODERATE 455T>C Leu152Pro
M0010421 ENPKCINK_00030 25830 5 Skin 0.15 protein_coding synonymous_variant LOW 423G>A Ala141Ala
M0010422 ENPKCINK_00018 13994 3 Skin 0.09 protein_coding synonymous_variant LOW 252T>C Asn84Asn
M0010423 ENPKCINK_00021 17530 3 Skin 0.09 protein_coding synonymous_variant LOW 774T>C Thr258Thr
M0010424 ENPKCINK_00023 20075 3 Skin 0.09 protein_coding synonymous_variant LOW 57C>T Thr19Thr
M0010425 ENPKCINK_00024 20319 3 Skin 0.09 protein_coding synonymous_variant LOW 1407T>C Asp469Asp
M0010426 ENPKCINK_00024 20349 3 Skin 0.09 protein_coding synonymous_variant LOW 1377A>G Ala459Ala
M0010427 ENPKCINK_00024 20350 3 Skin 0.09 protein_coding missense_variant MODERATE 1376C>T Ala459Val
M0010428 ENPKCINK_00024 20373 3 Skin 0.09 protein_coding synonymous_variant LOW 1353G>A Thr451Thr
M0010429 ENPKCINK_00024 20427 3 Skin 0.09 protein_coding synonymous_variant LOW 1299C>T Tyr433Tyr
M0010430 ENPKCINK_00024 20457 3 Skin 0.09 protein_coding synonymous_variant LOW 1269C>G Ala423Ala
M0010431 ENPKCINK_00024 20496 4 Skin 0.12 protein_coding synonymous_variant LOW 1230A>T Pro410Pro
M0010432 ENPKCINK_00024 20682 3 Skin 0.09 protein_coding synonymous_variant LOW 1044G>A Lys348Lys
M0010433 ENPKCINK_00024 20691 3 Skin 0.09 protein_coding synonymous_variant LOW 1035C>G Ala345Ala
M0010434 ENPKCINK_00021 21754 4 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3451T>C None
M0010435 ENPKCINK_00021 21756 4 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3453A>C None
M0010436 ENPKCINK_00021 21758 4 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3455A>T None
M0010437 ENPKCINK_00026 22268 3 Skin 0.09 protein_coding synonymous_variant LOW 570C>T Val190Val
M0010438 ENPKCINK_00026 22484 3 Skin 0.09 protein_coding synonymous_variant LOW 354C>T His118His
M0010439 ENPKCINK_00026 22490 3 Skin 0.09 protein_coding synonymous_variant LOW 348A>G Ala116Ala
M0010440 ENPKCINK_00027 23437 3 Skin 0.09 protein_coding synonymous_variant LOW 516T>C Cys172Cys
M0010441 ENPKCINK_00027 23441 3 Skin 0.09 protein_coding missense_variant MODERATE 520A>G Thr174Ala
M0010442 ENPKCINK_00027 23446 3 Skin 0.09 protein_coding synonymous_variant LOW 525C>T Pro175Pro
M0010443 ENPKCINK_00027 23482 4 Skin 0.12 protein_coding synonymous_variant LOW 561G>A Pro187Pro
M0010444 ENPKCINK_00028 24419 4 Skin 0.12 protein_coding synonymous_variant LOW 69A>G Val23Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
ENPKCINK_00016 SMZ57541.1|GT9 90.7 3.87e-241 1 364 1 1
ENPKCINK_00018 SMZ57543.1|GT73 94.5 3.63e-215 1 307 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term