Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1669
  Reference Plasmid   1111525849486442_bin.27__k141_176917
  Reference Plasmid Size   37825
  Reference Plasmid GC Content   0.55
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0010471 LBELLNOK_00035 36299 21 Skin 0.39 protein_coding synonymous_variant LOW 261T>C His87His
M0010472 LBELLNOK_00028 29279 10 Skin 0.19 protein_coding missense_variant MODERATE 1295T>A Val432Asp
M0010473 LBELLNOK_00028 29281 10 Skin 0.19 protein_coding synonymous_variant LOW 1293A>T Ile431Ile
M0010474 LBELLNOK_00029 31534 3 Skin 0.06 protein_coding synonymous_variant LOW 828T>C Cys276Cys
M0010475 LBELLNOK_00029 31633 4 Skin 0.07 protein_coding synonymous_variant LOW 927T>A Ala309Ala
M0010476 LBELLNOK_00030 31659 3 Skin 0.06 protein_coding missense_variant MODERATE 73A>G Ser25Gly
M0010477 LBELLNOK_00030 31666 3 Skin 0.06 protein_coding synonymous_variant LOW 66A>G Lys22Lys
M0010478 LBELLNOK_00030 31671 3 Skin 0.06 protein_coding missense_variant MODERATE 61C>A Leu21Ile
M0010479 LBELLNOK_00030 31678 3 Skin 0.06 protein_coding synonymous_variant LOW 54T>C Gly18Gly
M0010480 LBELLNOK_00003 1895 3 Skin 0.06 protein_coding synonymous_variant LOW 1797C>T Val599Val
M0010481 LBELLNOK_00003 1931 3 Skin 0.06 protein_coding synonymous_variant LOW 1761A>G Val587Val
M0010482 LBELLNOK_00016 15869 6 Skin 0.11 protein_coding synonymous_variant LOW 726A>C Thr242Thr
M0010483 LBELLNOK_00003 2573 5 Skin 0.09 protein_coding synonymous_variant LOW 1119A>G Glu373Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
LBELLNOK_00003 PHI:7575 yjiY 86.2 0 1 726 1.0000 1.0000 rodents salmonellosis peptide-utilizing carbon starvation protein reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
LBELLNOK_00009 SMZ54926.1|GT20 92.4 1.57e-169 1 236 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
LBELLNOK_00003 2.A.114.1.10 86.2 0 1 726 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.114 The Putative Peptide Transporter Carbon Starvation CstA (CstA) Family