Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1676
  Reference Plasmid   1111525849486442_bin.45__k141_359015
  Reference Plasmid Size   11652
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0010550 ODLLJACM_00003 3787 3 Skin 0.25 protein_coding missense_variant MODERATE 945A>C Glu315Asp
M0010551 ODLLJACM_00003 3811 3 Skin 0.25 protein_coding synonymous_variant LOW 921A>C Ile307Ile
M0010552 ODLLJACM_00003 3862 3 Skin 0.25 protein_coding synonymous_variant LOW 870G>T Leu290Leu
M0010553 ODLLJACM_00003 3865 3 Skin 0.25 protein_coding synonymous_variant LOW 867A>G Gln289Gln
M0010554 ODLLJACM_00003 3886 3 Skin 0.25 protein_coding synonymous_variant LOW 846G>C Leu282Leu
M0010555 ODLLJACM_00003 3895 3 Skin 0.25 protein_coding synonymous_variant LOW 837T>A Ala279Ala
M0010556 ODLLJACM_00003 3898 3 Skin 0.25 protein_coding synonymous_variant LOW 834T>G Ala278Ala
M0010557 ODLLJACM_00003 3904 3 Skin 0.25 protein_coding synonymous_variant LOW 828C>A Val276Val
M0010558 ODLLJACM_00003 3907 3 Skin 0.25 protein_coding synonymous_variant LOW 825A>G Ala275Ala
M0010559 ODLLJACM_00003 3910 3 Skin 0.25 protein_coding synonymous_variant LOW 822A>T Ala274Ala
M0010560 ODLLJACM_00003 3916 3 Skin 0.25 protein_coding synonymous_variant LOW 816G>A Leu272Leu
M0010561 ODLLJACM_00003 3934 3 Skin 0.25 protein_coding synonymous_variant LOW 798C>T Phe266Phe
M0010562 ODLLJACM_00003 3937 3 Skin 0.25 protein_coding synonymous_variant LOW 795T>A Val265Val
M0010563 ODLLJACM_00003 4039 3 Skin 0.25 protein_coding synonymous_variant LOW 693T>C Ile231Ile
M0010564 ODLLJACM_00003 4042 3 Skin 0.25 protein_coding synonymous_variant LOW 690G>A Leu230Leu
M0010565 ODLLJACM_00003 4051 3 Skin 0.25 protein_coding synonymous_variant LOW 681T>C Ala227Ala
M0010566 ODLLJACM_00003 4144 3 Skin 0.25 protein_coding synonymous_variant LOW 588T>C Ala196Ala
M0010567 ODLLJACM_00003 4222 3 Skin 0.25 protein_coding synonymous_variant LOW 510T>C Thr170Thr
M0010568 ODLLJACM_00003 4291 3 Skin 0.25 protein_coding synonymous_variant LOW 441G>A Glu147Glu
M0010569 ODLLJACM_00003 4321 3 Skin 0.25 protein_coding synonymous_variant LOW 411C>T Gly137Gly
M0010570 ODLLJACM_00003 4327 3 Skin 0.25 protein_coding synonymous_variant LOW 405A>T Ile135Ile
M0010571 ODLLJACM_00003 4368 3 Skin 0.25 protein_coding synonymous_variant LOW 364C>T Leu122Leu
M0010572 ODLLJACM_00003 4426 3 Skin 0.25 protein_coding synonymous_variant LOW 306A>G Val102Val
M0010573 ODLLJACM_00003 4429 3 Skin 0.25 protein_coding synonymous_variant LOW 303T>A Gly101Gly
M0010574 ODLLJACM_00003 4461 3 Skin 0.25 protein_coding synonymous_variant LOW 271T>C Leu91Leu
M0010575 ODLLJACM_00003 4477 3 Skin 0.25 protein_coding synonymous_variant LOW 255A>C Gly85Gly
M0010576 ODLLJACM_00003 4482 3 Skin 0.25 protein_coding synonymous_variant LOW 250C>T Leu84Leu
M0010577 ODLLJACM_00003 4483 3 Skin 0.25 protein_coding synonymous_variant LOW 249A>G Lys83Lys
M0010578 ODLLJACM_00003 4489 3 Skin 0.25 protein_coding synonymous_variant LOW 243G>A Leu81Leu
M0010579 ODLLJACM_00003 4498 3 Skin 0.25 protein_coding synonymous_variant LOW 234G>T Arg78Arg
M0010580 ODLLJACM_00003 4537 3 Skin 0.25 protein_coding synonymous_variant LOW 195A>G Pro65Pro
M0010581 ODLLJACM_00003 4593 3 Skin 0.25 protein_coding synonymous_variant LOW 139A>C Arg47Arg
M0010582 ODLLJACM_00004 5013 3 Skin 0.25 protein_coding synonymous_variant LOW 87T>G Ser29Ser
M0010583 ODLLJACM_00004 5016 3 Skin 0.25 protein_coding synonymous_variant LOW 84A>G Leu28Leu
M0010584 ODLLJACM_00004 5043 3 Skin 0.25 protein_coding synonymous_variant LOW 57G>A Val19Val
M0010585 ODLLJACM_00004 5070 3 Skin 0.25 protein_coding synonymous_variant LOW 30T>C Ile10Ile
M0010586 ODLLJACM_00005 5150 3 Skin 0.25 protein_coding synonymous_variant LOW 582A>G Leu194Leu
M0010587 ODLLJACM_00005 5354 3 Skin 0.25 protein_coding synonymous_variant LOW 378T>C Thr126Thr
M0010588 ODLLJACM_00005 5357 3 Skin 0.25 protein_coding synonymous_variant LOW 375A>G Pro125Pro
M0010589 ODLLJACM_00005 5387 3 Skin 0.25 protein_coding synonymous_variant LOW 345G>A Lys115Lys
M0010590 ODLLJACM_00005 5401 3 Skin 0.25 protein_coding synonymous_variant LOW 331T>C Leu111Leu
M0010591 ODLLJACM_00005 5705 3 Skin 0.25 protein_coding synonymous_variant LOW 27T>C Pro9Pro
M0010592 ODLLJACM_00006 5970 5 Skin 0.42 protein_coding synonymous_variant LOW 1599G>A Ser533Ser
M0010593 ODLLJACM_00006 6157 3 Skin 0.25 protein_coding missense_variant MODERATE 1412C>A Ala471Asp
M0010594 ODLLJACM_00006 6161 3 Skin 0.25 protein_coding missense_variant MODERATE 1408A>G Asn470Asp
M0010595 ODLLJACM_00006 6162 3 Skin 0.25 protein_coding synonymous_variant LOW 1407T>C Leu469Leu
M0010596 ODLLJACM_00006 6176 4 Skin 0.33 protein_coding missense_variant MODERATE 1393C>G His465Asp
M0010597 ODLLJACM_00006 6183 3 Skin 0.25 protein_coding synonymous_variant LOW 1386C>T Val462Val
M0010598 ODLLJACM_00006 6186 3 Skin 0.25 protein_coding synonymous_variant LOW 1383A>G Leu461Leu
M0010599 ODLLJACM_00006 6207 3 Skin 0.25 protein_coding synonymous_variant LOW 1362T>C Asp454Asp
M0010600 ODLLJACM_00006 6228 3 Skin 0.25 protein_coding synonymous_variant LOW 1341C>A Pro447Pro
M0010601 ODLLJACM_00006 6231 4 Skin 0.33 protein_coding synonymous_variant LOW 1338G>T Val446Val
M0010602 ODLLJACM_00006 6273 3 Skin 0.25 protein_coding synonymous_variant LOW 1296A>C Ser432Ser
M0010603 ODLLJACM_00006 6279 3 Skin 0.25 protein_coding synonymous_variant LOW 1290A>G Ala430Ala
M0010604 ODLLJACM_00006 6316 4 Skin 0.33 protein_coding missense_variant MODERATE 1253T>C Met418Thr
M0010605 ODLLJACM_00006 6393 3 Skin 0.25 protein_coding synonymous_variant LOW 1176T>C Ser392Ser
M0010606 ODLLJACM_00006 6411 3 Skin 0.25 protein_coding synonymous_variant LOW 1158T>C Arg386Arg
M0010607 ODLLJACM_00006 6414 3 Skin 0.25 protein_coding synonymous_variant LOW 1155T>C His385His
M0010608 ODLLJACM_00006 6423 3 Skin 0.25 protein_coding synonymous_variant LOW 1146G>A Ala382Ala
M0010609 ODLLJACM_00006 6426 3 Skin 0.25 protein_coding synonymous_variant LOW 1143T>C Ala381Ala
M0010610 ODLLJACM_00006 6449 3 Skin 0.25 protein_coding missense_variant MODERATE 1120A>G Asn374Asp
M0010611 ODLLJACM_00006 6498 3 Skin 0.25 protein_coding synonymous_variant LOW 1071G>A Glu357Glu
M0010612 ODLLJACM_00006 6552 3 Skin 0.25 protein_coding synonymous_variant LOW 1017T>C Thr339Thr
M0010613 ODLLJACM_00006 6729 3 Skin 0.25 protein_coding synonymous_variant LOW 840G>A Lys280Lys
M0010614 ODLLJACM_00006 6783 3 Skin 0.25 protein_coding synonymous_variant LOW 786T>C Asp262Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term