Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1677
  Reference Plasmid   1111525849486442_bin.45__k141_402641
  Reference Plasmid Size   13032
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0010615 JJHIKMCJ_00001 3357 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -2194T>A None
M0010616 JJHIKMCJ_00001 3390 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -2227T>G None
M0010617 JJHIKMCJ_00001 3399 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -2236T>A None
M0010618 JJHIKMCJ_00001 3406 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -2243G>T None
M0010619 JJHIKMCJ_00001 3567 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -2404A>G None
M0010620 JJHIKMCJ_00001 3638 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -2475G>A None
M0010621 JJHIKMCJ_00001 3681 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -2518A>T None
M0010622 JJHIKMCJ_00001 3825 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -2662C>T None
M0010623 JJHIKMCJ_00001 3837 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -2674A>T None
M0010624 JJHIKMCJ_00004 4036 6 Skin 0.55 protein_coding synonymous_variant LOW 144A>G Leu48Leu
M0010625 JJHIKMCJ_00004 4081 6 Skin 0.55 protein_coding synonymous_variant LOW 189A>G Val63Val
M0010626 JJHIKMCJ_00004 4106 6 Skin 0.55 protein_coding missense_variant MODERATE 214A>G Thr72Ala
M0010627 JJHIKMCJ_00004 4177 5 Skin 0.45 protein_coding synonymous_variant LOW 285A>T Ala95Ala
M0010628 JJHIKMCJ_00004 4216 6 Skin 0.55 protein_coding synonymous_variant LOW 324C>G Leu108Leu
M0010629 JJHIKMCJ_00004 4234 6 Skin 0.55 protein_coding synonymous_variant LOW 342T>C Ala114Ala
M0010630 JJHIKMCJ_00004 4255 5 Skin 0.45 protein_coding synonymous_variant LOW 363G>A Lys121Lys
M0010631 JJHIKMCJ_00004 4258 6 Skin 0.55 protein_coding synonymous_variant LOW 366G>A Glu122Glu
M0010632 JJHIKMCJ_00004 4558 6 Skin 0.55 protein_coding synonymous_variant LOW 666C>T Gly222Gly
M0010633 JJHIKMCJ_00001 4578 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -3415A>G None
M0010634 JJHIKMCJ_00005 4586 5 Skin 0.45 protein_coding missense_variant MODERATE 5T>C Val2Ala
M0010635 JJHIKMCJ_00005 4629 6 Skin 0.55 protein_coding synonymous_variant LOW 48C>T Ser16Ser
M0010636 JJHIKMCJ_00005 4764 6 Skin 0.55 protein_coding synonymous_variant LOW 183T>C Val61Val
M0010637 JJHIKMCJ_00005 4851 6 Skin 0.55 protein_coding synonymous_variant LOW 270C>T Ser90Ser
M0010638 JJHIKMCJ_00005 4878 6 Skin 0.55 protein_coding synonymous_variant LOW 297T>G Pro99Pro
M0010639 JJHIKMCJ_00005 4881 6 Skin 0.55 protein_coding synonymous_variant LOW 300A>G Val100Val
M0010640 JJHIKMCJ_00005 4911 6 Skin 0.55 protein_coding synonymous_variant LOW 330T>C Thr110Thr
M0010641 JJHIKMCJ_00005 5065 6 Skin 0.55 protein_coding synonymous_variant LOW 484C>T Leu162Leu
M0010642 JJHIKMCJ_00005 5097 6 Skin 0.55 protein_coding synonymous_variant LOW 516G>C Pro172Pro
M0010643 JJHIKMCJ_00005 5247 6 Skin 0.55 protein_coding synonymous_variant LOW 666G>A Lys222Lys
M0010644 JJHIKMCJ_00005 5403 5 Skin 0.45 protein_coding synonymous_variant LOW 822A>G Leu274Leu
M0010645 JJHIKMCJ_00005 5436 3 Skin 0.27 protein_coding synonymous_variant LOW 855C>T Ser285Ser
M0010646 JJHIKMCJ_00005 5457 4 Skin 0.36 protein_coding synonymous_variant LOW 876C>T Phe292Phe
M0010647 JJHIKMCJ_00005 5877 4 Skin 0.36 protein_coding synonymous_variant LOW 1296G>A Leu432Leu
M0010648 JJHIKMCJ_00005 5880 4 Skin 0.36 protein_coding synonymous_variant LOW 1299T>C Val433Val
M0010649 JJHIKMCJ_00005 5895 4 Skin 0.36 protein_coding synonymous_variant LOW 1314A>C Ile438Ile
M0010650 JJHIKMCJ_00001 737 3 Skin 0.27 protein_coding missense_variant MODERATE 427A>G Ile143Val
M0010651 JJHIKMCJ_00001 741 3 Skin 0.27 protein_coding synonymous_variant LOW 423T>C Ala141Ala
M0010652 JJHIKMCJ_00001 753 3 Skin 0.27 protein_coding synonymous_variant LOW 411A>G Pro137Pro
M0010653 JJHIKMCJ_00001 879 3 Skin 0.27 protein_coding synonymous_variant LOW 285C>T Leu95Leu
M0010654 JJHIKMCJ_00001 1032 3 Skin 0.27 protein_coding synonymous_variant LOW 132T>C Gly44Gly
M0010655 JJHIKMCJ_00001 1154 3 Skin 0.27 protein_coding missense_variant MODERATE 10C>G Pro4Ala
M0010656 JJHIKMCJ_00001 1197 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -34C>T None
M0010657 JJHIKMCJ_00002 1263 3 Skin 0.27 protein_coding synonymous_variant LOW 652C>T Leu218Leu
M0010658 JJHIKMCJ_00002 1264 3 Skin 0.27 protein_coding synonymous_variant LOW 651G>A Ser217Ser
M0010659 JJHIKMCJ_00002 1285 3 Skin 0.27 protein_coding synonymous_variant LOW 630G>A Pro210Pro
M0010660 JJHIKMCJ_00002 1353 4 Skin 0.36 protein_coding missense_variant MODERATE 562A>G Asn188Asp
M0010661 JJHIKMCJ_00002 1447 3 Skin 0.27 protein_coding synonymous_variant LOW 468C>T Ser156Ser
M0010662 JJHIKMCJ_00002 1531 3 Skin 0.27 protein_coding synonymous_variant LOW 384A>G Val128Val
M0010663 JJHIKMCJ_00002 1537 3 Skin 0.27 protein_coding synonymous_variant LOW 378C>A Ala126Ala
M0010664 JJHIKMCJ_00002 1553 3 Skin 0.27 protein_coding missense_variant MODERATE 362C>T Thr121Ile
M0010665 JJHIKMCJ_00002 1579 3 Skin 0.27 protein_coding synonymous_variant LOW 336T>C Gly112Gly
M0010666 JJHIKMCJ_00002 1657 3 Skin 0.27 protein_coding synonymous_variant LOW 258G>A Gly86Gly
M0010667 JJHIKMCJ_00003 2047 4 Skin 0.36 protein_coding synonymous_variant LOW 84C>T Ala28Ala
M0010668 JJHIKMCJ_00003 2077 3 Skin 0.27 protein_coding synonymous_variant LOW 114C>T Val38Val
M0010669 JJHIKMCJ_00003 2110 4 Skin 0.36 protein_coding synonymous_variant LOW 147A>G Leu49Leu
M0010670 JJHIKMCJ_00003 2158 4 Skin 0.36 protein_coding synonymous_variant LOW 195C>G Arg65Arg
M0010671 JJHIKMCJ_00003 2161 4 Skin 0.36 protein_coding missense_variant MODERATE 198G>T Leu66Phe
M0010672 JJHIKMCJ_00003 2222 4 Skin 0.36 protein_coding missense_variant MODERATE 259T>C Phe87Leu
M0010673 JJHIKMCJ_00003 2251 4 Skin 0.36 protein_coding synonymous_variant LOW 288A>G Pro96Pro
M0010674 JJHIKMCJ_00003 2257 4 Skin 0.36 protein_coding synonymous_variant LOW 294A>G Glu98Glu
M0010675 JJHIKMCJ_00003 2263 4 Skin 0.36 protein_coding synonymous_variant LOW 300G>C Leu100Leu
M0010676 JJHIKMCJ_00003 2309 3 Skin 0.27 protein_coding missense_variant MODERATE 346C>T Leu116Phe
M0010677 JJHIKMCJ_00003 2311 3 Skin 0.27 protein_coding synonymous_variant LOW 348T>G Leu116Leu
M0010678 JJHIKMCJ_00003 2315 3 Skin 0.27 protein_coding synonymous_variant LOW 352C>T Leu118Leu
M0010679 JJHIKMCJ_00003 2553 4 Skin 0.36 protein_coding missense_variant MODERATE 590T>C Ile197Thr
M0010680 JJHIKMCJ_00003 2587 4 Skin 0.36 protein_coding synonymous_variant LOW 624C>G Thr208Thr
M0010681 JJHIKMCJ_00003 2595 4 Skin 0.36 protein_coding missense_variant MODERATE 632T>C Val211Ala
M0010682 JJHIKMCJ_00003 2609 4 Skin 0.36 protein_coding missense_variant MODERATE 646T>A Phe216Ile
M0010683 JJHIKMCJ_00003 2615 4 Skin 0.36 protein_coding missense_variant MODERATE 652T>C Tyr218His
M0010684 JJHIKMCJ_00003 2657 5 Skin 0.45 protein_coding synonymous_variant LOW 694T>C Leu232Leu
M0010685 JJHIKMCJ_00003 2797 5 Skin 0.45 protein_coding synonymous_variant LOW 834T>C Ile278Ile
M0010686 JJHIKMCJ_00003 2828 4 Skin 0.36 protein_coding missense_variant MODERATE 865C>T Pro289Ser
M0010687 JJHIKMCJ_00003 2840 4 Skin 0.36 protein_coding missense_variant MODERATE 877A>T Met293Leu
M0010688 JJHIKMCJ_00003 2853 5 Skin 0.45 protein_coding missense_variant MODERATE 890G>A Cys297Tyr
M0010689 JJHIKMCJ_00003 2868 5 Skin 0.45 protein_coding missense_variant MODERATE 905T>C Met302Thr
M0010690 JJHIKMCJ_00003 2939 4 Skin 0.36 protein_coding synonymous_variant LOW 976C>T Leu326Leu
M0010691 JJHIKMCJ_00003 2944 4 Skin 0.36 protein_coding synonymous_variant LOW 981C>T Ile327Ile
M0010692 JJHIKMCJ_00003 2980 4 Skin 0.36 protein_coding synonymous_variant LOW 1017A>G Leu339Leu
M0010693 JJHIKMCJ_00003 2999 5 Skin 0.45 protein_coding missense_variant MODERATE 1036A>G Met346Val
M0010694 JJHIKMCJ_00003 3058 5 Skin 0.45 protein_coding synonymous_variant LOW 1095C>T Ile365Ile
M0010695 JJHIKMCJ_00003 3101 4 Skin 0.36 protein_coding missense_variant MODERATE 1138G>A Val380Met
M0010696 JJHIKMCJ_00001 3334 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2171G>C None
M0010697 JJHIKMCJ_00001 3343 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2180C>T None
M0010698 JJHIKMCJ_00001 3378 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -2215C>T None
M0010699 JJHIKMCJ_00001 3379 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -2216A>T None
M0010700 JJHIKMCJ_00001 3478 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -2315A>T None
M0010701 JJHIKMCJ_00004 3979 3 Skin 0.27 protein_coding synonymous_variant LOW 87G>A Glu29Glu
M0010702 JJHIKMCJ_00004 4072 4 Skin 0.36 protein_coding synonymous_variant LOW 180C>T Gly60Gly
M0010703 JJHIKMCJ_00004 4135 4 Skin 0.36 protein_coding synonymous_variant LOW 243T>G Arg81Arg
M0010704 JJHIKMCJ_00004 4531 4 Skin 0.36 protein_coding synonymous_variant LOW 639C>T Thr213Thr
M0010705 JJHIKMCJ_00004 4546 4 Skin 0.36 protein_coding synonymous_variant LOW 654C>T Gly218Gly
M0010706 JJHIKMCJ_00005 4791 3 Skin 0.27 protein_coding synonymous_variant LOW 210G>T Val70Val
M0010707 JJHIKMCJ_00005 4800 3 Skin 0.27 protein_coding synonymous_variant LOW 219A>G Glu73Glu
M0010708 JJHIKMCJ_00005 5010 3 Skin 0.27 protein_coding synonymous_variant LOW 429T>C Leu143Leu
M0010709 JJHIKMCJ_00005 5361 3 Skin 0.27 protein_coding synonymous_variant LOW 780C>T Ser260Ser
M0010710 JJHIKMCJ_00005 5367 3 Skin 0.27 protein_coding synonymous_variant LOW 786G>A Gly262Gly
M0010711 JJHIKMCJ_00005 5523 3 Skin 0.27 protein_coding synonymous_variant LOW 942C>T Ile314Ile
M0010712 JJHIKMCJ_00005 5672 3 Skin 0.27 protein_coding missense_variant MODERATE 1091A>G Asn364Ser
M0010713 JJHIKMCJ_00005 5736 3 Skin 0.27 protein_coding synonymous_variant LOW 1155A>G Val385Val
M0010714 JJHIKMCJ_00005 5754 3 Skin 0.27 protein_coding synonymous_variant LOW 1173G>A Arg391Arg
M0010715 JJHIKMCJ_00001 5985 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4822C>T None
M0010716 JJHIKMCJ_00006 6185 3 Skin 0.27 protein_coding missense_variant MODERATE 633G>T Gln211His
M0010717 JJHIKMCJ_00006 6536 3 Skin 0.27 protein_coding synonymous_variant LOW 282C>A Ser94Ser
M0010718 JJHIKMCJ_00006 6575 3 Skin 0.27 protein_coding synonymous_variant LOW 243G>A Gln81Gln
M0010719 JJHIKMCJ_00006 6577 3 Skin 0.27 protein_coding missense_variant MODERATE 241C>A Gln81Lys
M0010720 JJHIKMCJ_00006 6589 3 Skin 0.27 protein_coding missense_variant MODERATE 229A>C Ile77Leu
M0010721 JJHIKMCJ_00006 6680 3 Skin 0.27 protein_coding synonymous_variant LOW 138A>G Leu46Leu
M0010722 JJHIKMCJ_00006 6682 3 Skin 0.27 protein_coding synonymous_variant LOW 136C>T Leu46Leu
M0010723 JJHIKMCJ_00006 6764 3 Skin 0.27 protein_coding synonymous_variant LOW 54A>G Ser18Ser
M0010724 JJHIKMCJ_00006 6788 3 Skin 0.27 protein_coding synonymous_variant LOW 30T>G Val10Val
M0010725 JJHIKMCJ_00006 6789 3 Skin 0.27 protein_coding missense_variant MODERATE 29T>C Val10Ala
M0010726 JJHIKMCJ_00006 6791 3 Skin 0.27 protein_coding synonymous_variant LOW 27T>C Asn9Asn
M0010727 JJHIKMCJ_00006 6809 3 Skin 0.27 protein_coding synonymous_variant LOW 9C>T Asp3Asp
M0010728 JJHIKMCJ_00006 6811 3 Skin 0.27 protein_coding missense_variant MODERATE 7G>A Asp3Asn
M0010729 JJHIKMCJ_00006 6812 3 Skin 0.27 protein_coding synonymous_variant LOW 6C>G Gly2Gly
M0010730 JJHIKMCJ_00002 6857 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4943G>C None
M0010731 JJHIKMCJ_00002 6860 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4946G>A None
M0010732 JJHIKMCJ_00002 6906 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4992C>A None
M0010733 JJHIKMCJ_00006 6927 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -110T>C None
M0010734 JJHIKMCJ_00006 6939 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -122T>C None
M0010735 JJHIKMCJ_00007 6991 3 Skin 0.27 protein_coding synonymous_variant LOW 1167T>C Asn389Asn
M0010736 JJHIKMCJ_00007 6994 3 Skin 0.27 protein_coding synonymous_variant LOW 1164C>G Ala388Ala
M0010737 JJHIKMCJ_00007 7051 3 Skin 0.27 protein_coding synonymous_variant LOW 1107T>A Arg369Arg
M0010738 JJHIKMCJ_00007 7060 3 Skin 0.27 protein_coding missense_variant MODERATE 1098A>G Ile366Met
M0010739 JJHIKMCJ_00007 7063 3 Skin 0.27 protein_coding synonymous_variant LOW 1095A>G Thr365Thr
M0010740 JJHIKMCJ_00007 7146 3 Skin 0.27 protein_coding missense_variant MODERATE 1012C>A Leu338Ile
M0010741 JJHIKMCJ_00007 7210 3 Skin 0.27 protein_coding synonymous_variant LOW 948C>T Phe316Phe
M0010742 JJHIKMCJ_00007 7309 3 Skin 0.27 protein_coding synonymous_variant LOW 849G>A Ala283Ala
M0010743 JJHIKMCJ_00007 7348 3 Skin 0.27 protein_coding synonymous_variant LOW 810C>G Val270Val
M0010744 JJHIKMCJ_00007 7408 3 Skin 0.27 protein_coding synonymous_variant LOW 750G>A Pro250Pro
M0010745 JJHIKMCJ_00007 7417 3 Skin 0.27 protein_coding synonymous_variant LOW 741A>G Lys247Lys
M0010746 JJHIKMCJ_00003 2989 4 Skin 0.36 protein_coding missense_variant MODERATE 1026A>G Ile342Met
M0010747 JJHIKMCJ_00003 3010 3 Skin 0.27 protein_coding synonymous_variant LOW 1047C>T Tyr349Tyr
M0010748 JJHIKMCJ_00001 3201 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -2038A>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term