Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1690
  Reference Plasmid   1111525849486576_bin.55__k141_414635
  Reference Plasmid Size   23338
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0010983 AEGEMGLG_00009 6310 3 Skin 0.43 protein_coding synonymous_variant LOW 243A>G Pro81Pro
M0010984 AEGEMGLG_00009 6313 3 Skin 0.43 protein_coding synonymous_variant LOW 246C>T Phe82Phe
M0010985 AEGEMGLG_00009 6331 3 Skin 0.43 protein_coding synonymous_variant LOW 264T>C Phe88Phe
M0010986 AEGEMGLG_00009 6349 3 Skin 0.43 protein_coding synonymous_variant LOW 282T>C Asp94Asp
M0010987 AEGEMGLG_00009 6370 3 Skin 0.43 protein_coding synonymous_variant LOW 303T>C Arg101Arg
M0010988 AEGEMGLG_00009 6386 3 Skin 0.43 protein_coding missense_variant MODERATE 319A>G Ile107Val
M0010989 AEGEMGLG_00009 6406 3 Skin 0.43 protein_coding synonymous_variant LOW 339A>G Pro113Pro
M0010990 AEGEMGLG_00009 6640 3 Skin 0.43 protein_coding synonymous_variant LOW 573C>G Pro191Pro
M0010991 AEGEMGLG_00009 6646 3 Skin 0.43 protein_coding synonymous_variant LOW 579G>A Glu193Glu
M0010992 AEGEMGLG_00009 6706 3 Skin 0.43 protein_coding synonymous_variant LOW 639T>C Gly213Gly
M0010993 AEGEMGLG_00009 6760 3 Skin 0.43 protein_coding synonymous_variant LOW 693G>A Glu231Glu
M0010994 AEGEMGLG_00009 6857 3 Skin 0.43 protein_coding missense_variant MODERATE 790G>A Asp264Asn
M0010995 AEGEMGLG_00010 6903 3 Skin 0.43 protein_coding synonymous_variant LOW 24C>T Asn8Asn
M0010996 AEGEMGLG_00010 6969 3 Skin 0.43 protein_coding synonymous_variant LOW 90T>C His30His
M0010997 AEGEMGLG_00010 6987 3 Skin 0.43 protein_coding synonymous_variant LOW 108G>C Val36Val
M0010998 AEGEMGLG_00010 7031 3 Skin 0.43 protein_coding missense_variant MODERATE 152C>T Ala51Val
M0010999 AEGEMGLG_00010 7152 3 Skin 0.43 protein_coding synonymous_variant LOW 273T>C Val91Val
M0011000 AEGEMGLG_00010 7218 3 Skin 0.43 protein_coding synonymous_variant LOW 339A>G Thr113Thr
M0011001 AEGEMGLG_00010 7251 3 Skin 0.43 protein_coding synonymous_variant LOW 372C>G Ser124Ser
M0011002 AEGEMGLG_00010 7374 3 Skin 0.43 protein_coding synonymous_variant LOW 495C>T Gly165Gly
M0011003 AEGEMGLG_00010 7431 3 Skin 0.43 protein_coding synonymous_variant LOW 552T>C Asp184Asp
M0011004 AEGEMGLG_00010 7440 3 Skin 0.43 protein_coding synonymous_variant LOW 561G>C Gly187Gly
M0011005 AEGEMGLG_00010 7456 3 Skin 0.43 protein_coding missense_variant MODERATE 577A>C Ser193Arg
M0011006 AEGEMGLG_00010 7466 3 Skin 0.43 protein_coding missense_variant MODERATE 587C>T Ser196Phe
M0011007 AEGEMGLG_00010 7472 3 Skin 0.43 protein_coding missense_variant MODERATE 593C>T Thr198Ile
M0011008 AEGEMGLG_00010 7482 3 Skin 0.43 protein_coding synonymous_variant LOW 603C>G Val201Val
M0011009 AEGEMGLG_00010 7914 3 Skin 0.43 protein_coding synonymous_variant LOW 1035A>C Leu345Leu
M0011010 AEGEMGLG_00010 8040 3 Skin 0.43 protein_coding synonymous_variant LOW 1161T>A Ala387Ala
M0011011 AEGEMGLG_00010 8076 3 Skin 0.43 protein_coding synonymous_variant LOW 1197G>C Gly399Gly
M0011012 AEGEMGLG_00010 8097 3 Skin 0.43 protein_coding synonymous_variant LOW 1218T>C Asp406Asp
M0011013 AEGEMGLG_00010 8106 3 Skin 0.43 protein_coding synonymous_variant LOW 1227T>C His409His
M0011014 AEGEMGLG_00010 8197 3 Skin 0.43 protein_coding missense_variant MODERATE 1318C>G Leu440Val
M0011015 AEGEMGLG_00010 8202 3 Skin 0.43 protein_coding synonymous_variant LOW 1323C>T His441His
M0011016 AEGEMGLG_00010 8205 3 Skin 0.43 protein_coding synonymous_variant LOW 1326G>C Gly442Gly
M0011017 AEGEMGLG_00010 8208 3 Skin 0.43 protein_coding synonymous_variant LOW 1329A>G Val443Val
M0011018 AEGEMGLG_00010 8211 3 Skin 0.43 protein_coding synonymous_variant LOW 1332A>G Lys444Lys
M0011019 AEGEMGLG_00010 8217 3 Skin 0.43 protein_coding synonymous_variant LOW 1338A>G Lys446Lys
M0011020 AEGEMGLG_00010 8457 3 Skin 0.43 protein_coding synonymous_variant LOW 1578C>G Ser526Ser
M0011021 AEGEMGLG_00010 8555 3 Skin 0.43 protein_coding missense_variant MODERATE 1676A>G Asp559Gly
M0011022 AEGEMGLG_00010 8577 3 Skin 0.43 protein_coding synonymous_variant LOW 1698A>G Gln566Gln
M0011023 AEGEMGLG_00010 8589 3 Skin 0.43 protein_coding synonymous_variant LOW 1710C>T Ser570Ser
M0011024 AEGEMGLG_00010 8617 3 Skin 0.43 protein_coding missense_variant MODERATE 1738C>A Pro580Thr
M0011025 AEGEMGLG_00010 8628 3 Skin 0.43 protein_coding synonymous_variant LOW 1749T>C Thr583Thr
M0011026 AEGEMGLG_00012 10654 3 Skin 0.43 protein_coding synonymous_variant LOW 714G>A Glu238Glu
M0011027 AEGEMGLG_00012 10767 3 Skin 0.43 protein_coding missense_variant MODERATE 601G>C Ala201Pro
M0011028 AEGEMGLG_00012 10855 3 Skin 0.43 protein_coding synonymous_variant LOW 513A>G Ala171Ala
M0011029 AEGEMGLG_00012 10878 3 Skin 0.43 protein_coding missense_variant MODERATE 490T>C Tyr164His
M0011030 AEGEMGLG_00012 10894 3 Skin 0.43 protein_coding synonymous_variant LOW 474T>G Leu158Leu
M0011031 AEGEMGLG_00012 11023 3 Skin 0.43 protein_coding synonymous_variant LOW 345T>C Gly115Gly
M0011032 AEGEMGLG_00012 11062 3 Skin 0.43 protein_coding synonymous_variant LOW 306C>G Ala102Ala
M0011033 AEGEMGLG_00012 11176 3 Skin 0.43 protein_coding synonymous_variant LOW 192A>G Gln64Gln
M0011034 AEGEMGLG_00012 11194 3 Skin 0.43 protein_coding synonymous_variant LOW 174T>C Leu58Leu
M0011035 AEGEMGLG_00012 11203 3 Skin 0.43 protein_coding synonymous_variant LOW 165A>G Leu55Leu
M0011036 AEGEMGLG_00012 11236 3 Skin 0.43 protein_coding synonymous_variant LOW 132A>G Gly44Gly
M0011037 AEGEMGLG_00012 11242 3 Skin 0.43 protein_coding synonymous_variant LOW 126A>C Ala42Ala
M0011038 AEGEMGLG_00012 11272 3 Skin 0.43 protein_coding synonymous_variant LOW 96T>C Ile32Ile
M0011039 AEGEMGLG_00012 11285 3 Skin 0.43 protein_coding missense_variant MODERATE 83A>G Gln28Arg
M0011040 AEGEMGLG_00012 11300 3 Skin 0.43 protein_coding missense_variant MODERATE 68C>T Ala23Val
M0011041 AEGEMGLG_00012 11317 3 Skin 0.43 protein_coding missense_variant MODERATE 51G>C Lys17Asn
M0011042 AEGEMGLG_00012 11319 3 Skin 0.43 protein_coding missense_variant MODERATE 49A>C Lys17Gln
M0011043 AEGEMGLG_00012 11325 3 Skin 0.43 protein_coding synonymous_variant LOW 43T>C Leu15Leu
M0011044 AEGEMGLG_00012 11362 3 Skin 0.43 protein_coding synonymous_variant LOW 6A>G Thr2Thr
M0011045 AEGEMGLG_00011 11384 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -1381A>G None
M0011046 AEGEMGLG_00014 12696 3 Skin 0.43 protein_coding missense_variant MODERATE 47A>C Asp16Ala
M0011047 AEGEMGLG_00014 12706 3 Skin 0.43 protein_coding synonymous_variant LOW 57C>G Ala19Ala
M0011048 AEGEMGLG_00014 12722 3 Skin 0.43 protein_coding missense_variant MODERATE 73A>C Met25Leu
M0011049 AEGEMGLG_00014 12740 3 Skin 0.43 protein_coding missense_variant MODERATE 91A>G Thr31Ala
M0011050 AEGEMGLG_00014 12742 3 Skin 0.43 protein_coding synonymous_variant LOW 93G>A Thr31Thr
M0011051 AEGEMGLG_00014 12796 3 Skin 0.43 protein_coding synonymous_variant LOW 147C>G Pro49Pro
M0011052 AEGEMGLG_00014 12823 3 Skin 0.43 protein_coding synonymous_variant LOW 174T>A Gly58Gly
M0011053 AEGEMGLG_00014 12923 3 Skin 0.43 protein_coding missense_variant MODERATE 274G>C Ala92Pro
M0011054 AEGEMGLG_00014 12956 3 Skin 0.43 protein_coding missense_variant MODERATE 307A>G Thr103Ala
M0011055 AEGEMGLG_00014 12964 3 Skin 0.43 protein_coding synonymous_variant LOW 315G>C Leu105Leu
M0011056 AEGEMGLG_00014 13066 3 Skin 0.43 protein_coding synonymous_variant LOW 417T>C Gly139Gly
M0011057 AEGEMGLG_00014 13223 3 Skin 0.43 protein_coding synonymous_variant LOW 574C>T Leu192Leu
M0011058 AEGEMGLG_00014 13369 3 Skin 0.43 protein_coding synonymous_variant LOW 720C>G Ala240Ala
M0011059 AEGEMGLG_00014 13372 3 Skin 0.43 protein_coding synonymous_variant LOW 723T>C Leu241Leu
M0011060 AEGEMGLG_00014 13414 3 Skin 0.43 protein_coding synonymous_variant LOW 765G>C Arg255Arg
M0011061 AEGEMGLG_00014 13417 3 Skin 0.43 protein_coding synonymous_variant LOW 768T>C Gly256Gly
M0011062 AEGEMGLG_00014 13612 3 Skin 0.43 protein_coding synonymous_variant LOW 963A>G Ala321Ala
M0011063 AEGEMGLG_00014 13675 3 Skin 0.43 protein_coding synonymous_variant LOW 1026C>T Ala342Ala
M0011064 AEGEMGLG_00014 13685 3 Skin 0.43 protein_coding missense_variant MODERATE 1036G>A Val346Ile
M0011065 AEGEMGLG_00014 13798 3 Skin 0.43 protein_coding synonymous_variant LOW 1149A>G Gln383Gln
M0011066 AEGEMGLG_00014 13817 3 Skin 0.43 protein_coding missense_variant MODERATE 1168A>G Ile390Val
M0011067 AEGEMGLG_00014 13873 3 Skin 0.43 protein_coding synonymous_variant LOW 1224G>C Ser408Ser
M0011068 AEGEMGLG_00014 13906 3 Skin 0.43 protein_coding synonymous_variant LOW 1257C>G Ala419Ala
M0011069 AEGEMGLG_00014 13948 3 Skin 0.43 protein_coding synonymous_variant LOW 1299G>T Leu433Leu
M0011070 AEGEMGLG_00014 13978 3 Skin 0.43 protein_coding synonymous_variant LOW 1329T>C Ala443Ala
M0011071 AEGEMGLG_00014 14104 3 Skin 0.43 protein_coding synonymous_variant LOW 1455G>C Ala485Ala
M0011072 AEGEMGLG_00014 14123 3 Skin 0.43 protein_coding missense_variant MODERATE 1474T>G Ser492Ala
M0011073 AEGEMGLG_00015 14233 3 Skin 0.43 protein_coding missense_variant MODERATE 70G>C Gly24Arg
M0011074 AEGEMGLG_00015 14376 3 Skin 0.43 protein_coding synonymous_variant LOW 213C>A Ile71Ile
M0011075 AEGEMGLG_00015 14380 3 Skin 0.43 protein_coding missense_variant MODERATE 217C>T Leu73Phe
M0011076 AEGEMGLG_00015 14382 3 Skin 0.43 protein_coding synonymous_variant LOW 219C>G Leu73Leu
M0011077 AEGEMGLG_00015 14388 3 Skin 0.43 protein_coding synonymous_variant LOW 225T>C Arg75Arg
M0011078 AEGEMGLG_00015 14473 3 Skin 0.43 protein_coding missense_variant MODERATE 310A>G Thr104Ala
M0011079 AEGEMGLG_00015 14550 3 Skin 0.43 protein_coding synonymous_variant LOW 387T>C Asn129Asn
M0011080 AEGEMGLG_00015 14562 3 Skin 0.43 protein_coding synonymous_variant LOW 399A>G Gln133Gln
M0011081 AEGEMGLG_00015 14649 3 Skin 0.43 protein_coding synonymous_variant LOW 486G>T Leu162Leu
M0011082 AEGEMGLG_00015 14655 3 Skin 0.43 protein_coding synonymous_variant LOW 492T>C His164His
M0011083 AEGEMGLG_00015 14669 3 Skin 0.43 protein_coding missense_variant MODERATE 506G>C Ser169Thr
M0011084 AEGEMGLG_00015 14730 3 Skin 0.43 protein_coding synonymous_variant LOW 567G>C Ala189Ala
M0011085 AEGEMGLG_00015 14757 3 Skin 0.43 protein_coding synonymous_variant LOW 594T>C Gly198Gly
M0011086 AEGEMGLG_00015 14795 3 Skin 0.43 protein_coding missense_variant MODERATE 632T>G Leu211Arg
M0011087 AEGEMGLG_00015 14805 3 Skin 0.43 protein_coding synonymous_variant LOW 642T>C Ser214Ser
M0011088 AEGEMGLG_00015 14844 3 Skin 0.43 protein_coding synonymous_variant LOW 681T>C Thr227Thr
M0011089 AEGEMGLG_00015 14850 3 Skin 0.43 protein_coding synonymous_variant LOW 687C>G Leu229Leu
M0011090 AEGEMGLG_00015 14856 3 Skin 0.43 protein_coding synonymous_variant LOW 693A>G Glu231Glu
M0011091 AEGEMGLG_00015 14863 3 Skin 0.43 protein_coding missense_variant MODERATE 700G>A Ala234Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term