Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1692
  Reference Plasmid   1111525849486576_bin.91__k141_385134
  Reference Plasmid Size   7018
  Reference Plasmid GC Content   0.72
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0011157 FEHJENMF_00005 4417 3 Skin 0.33 protein_coding synonymous_variant LOW 105C>T His35His
M0011158 FEHJENMF_00005 4420 6 Skin 0.67 protein_coding synonymous_variant LOW 102C>G Pro34Pro
M0011159 FEHJENMF_00006 4975 4 Skin 0.44 protein_coding synonymous_variant LOW 345C>G Ala115Ala
M0011160 FEHJENMF_00006 5227 5 Skin 0.56 protein_coding synonymous_variant LOW 93C>G Val31Val
M0011161 FEHJENMF_00006 5257 6 Skin 0.67 protein_coding synonymous_variant LOW 63T>C Asn21Asn
M0011162 FEHJENMF_00007 5400 6 Skin 0.67 protein_coding synonymous_variant LOW 642C>G Val214Val
M0011163 FEHJENMF_00007 5436 3 Skin 0.33 protein_coding synonymous_variant LOW 606C>T Pro202Pro
M0011164 FEHJENMF_00007 5580 6 Skin 0.67 protein_coding synonymous_variant LOW 462C>A Arg154Arg
M0011165 FEHJENMF_00007 5628 5 Skin 0.56 protein_coding synonymous_variant LOW 414C>G Ser138Ser
M0011166 FEHJENMF_00007 5799 6 Skin 0.67 protein_coding synonymous_variant LOW 243G>C Gly81Gly
M0011167 FEHJENMF_00007 5864 4 Skin 0.44 protein_coding missense_variant MODERATE 178A>G Ser60Gly
M0011168 FEHJENMF_00007 5976 4 Skin 0.44 protein_coding synonymous_variant LOW 66C>T Asp22Asp
M0011169 FEHJENMF_00007 5990 6 Skin 0.67 protein_coding missense_variant MODERATE 52C>T Leu18Phe
M0011170 FEHJENMF_00004 6091 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2228G>A None
M0011171 FEHJENMF_00004 6092 4 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -2229T>C None
M0011172 FEHJENMF_00005 4077 3 Skin 0.33 protein_coding missense_variant MODERATE 445G>A Ala149Thr
M0011173 FEHJENMF_00005 4117 3 Skin 0.33 protein_coding synonymous_variant LOW 405G>A Glu135Glu
M0011174 FEHJENMF_00005 4144 5 Skin 0.56 protein_coding synonymous_variant LOW 378T>G Val126Val
M0011175 FEHJENMF_00005 4149 5 Skin 0.56 protein_coding missense_variant MODERATE 373A>C Lys125Gln
M0011176 FEHJENMF_00007 5993 5 Skin 0.56 protein_coding missense_variant MODERATE 49G>A Gly17Ser
M0011177 FEHJENMF_00005 4304 4 Skin 0.44 protein_coding missense_variant MODERATE 218C>A Ala73Glu
M0011178 FEHJENMF_00005 4321 3 Skin 0.33 protein_coding synonymous_variant LOW 201C>G Arg67Arg
M0011179 FEHJENMF_00005 4390 3 Skin 0.33 protein_coding synonymous_variant LOW 132C>G Gly44Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term