Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1697
  Reference Plasmid   1111525849486744_bin.26__k141_165112
  Reference Plasmid Size   30929
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0011220 CNNPNODC_00006 5419 21 Skin 0.66 protein_coding synonymous_variant LOW 1176C>G Gly392Gly
M0011221 CNNPNODC_00006 5443 20 Skin 0.63 protein_coding synonymous_variant LOW 1200C>T Asp400Asp
M0011222 CNNPNODC_00006 5461 21 Skin 0.66 protein_coding synonymous_variant LOW 1218A>G Pro406Pro
M0011223 CNNPNODC_00007 5881 14 Skin 0.44 protein_coding synonymous_variant LOW 186C>T Gly62Gly
M0011224 CNNPNODC_00007 5896 14 Skin 0.44 protein_coding synonymous_variant LOW 201G>C Ala67Ala
M0011225 CNNPNODC_00007 6025 22 Skin 0.69 protein_coding synonymous_variant LOW 330A>G Pro110Pro
M0011226 CNNPNODC_00007 6035 23 Skin 0.72 protein_coding synonymous_variant LOW 340C>A Arg114Arg
M0011227 CNNPNODC_00007 6037 23 Skin 0.72 protein_coding synonymous_variant LOW 342A>G Arg114Arg
M0011228 CNNPNODC_00007 6134 7 Skin 0.22 protein_coding missense_variant MODERATE 439T>A Leu147Met
M0011229 CNNPNODC_00007 6173 8 Skin 0.25 protein_coding missense_variant MODERATE 478A>G Ile160Val
M0011230 CNNPNODC_00007 6220 9 Skin 0.28 protein_coding synonymous_variant LOW 525A>C Gly175Gly
M0011231 CNNPNODC_00007 6290 9 Skin 0.28 protein_coding missense_variant MODERATE 595G>T Gly199Cys
M0011232 CNNPNODC_00008 6717 9 Skin 0.28 protein_coding missense_variant MODERATE 205A>G Asn69Asp
M0011233 CNNPNODC_00008 6727 8 Skin 0.25 protein_coding synonymous_variant LOW 195C>T Phe65Phe
M0011234 CNNPNODC_00008 6736 9 Skin 0.28 protein_coding synonymous_variant LOW 186A>G Gln62Gln
M0011235 CNNPNODC_00008 6775 7 Skin 0.22 protein_coding synonymous_variant LOW 147C>G Pro49Pro
M0011236 CNNPNODC_00008 6841 6 Skin 0.19 protein_coding synonymous_variant LOW 81A>C Val27Val
M0011237 CNNPNODC_00009 7400 14 Skin 0.44 protein_coding synonymous_variant LOW 198A>G Val66Val
M0011238 CNNPNODC_00009 7430 14 Skin 0.44 protein_coding synonymous_variant LOW 228G>A Glu76Glu
M0011239 CNNPNODC_00009 7631 12 Skin 0.38 protein_coding synonymous_variant LOW 429G>A Glu143Glu
M0011240 CNNPNODC_00009 7652 12 Skin 0.38 protein_coding synonymous_variant LOW 450C>T Arg150Arg
M0011241 CNNPNODC_00009 7655 12 Skin 0.38 protein_coding synonymous_variant LOW 453C>T Ile151Ile
M0011242 CNNPNODC_00009 7664 12 Skin 0.38 protein_coding synonymous_variant LOW 462G>A Glu154Glu
M0011243 CNNPNODC_00009 7799 15 Skin 0.47 protein_coding synonymous_variant LOW 597G>A Glu199Glu
M0011244 CNNPNODC_00009 7982 18 Skin 0.56 protein_coding synonymous_variant LOW 780T>C His260His
M0011245 CNNPNODC_00010 8234 8 Skin 0.25 protein_coding missense_variant MODERATE 103A>G Ile35Val
M0011246 CNNPNODC_00010 8239 8 Skin 0.25 protein_coding synonymous_variant LOW 108T>C Tyr36Tyr
M0011247 CNNPNODC_00010 8320 9 Skin 0.28 protein_coding missense_variant MODERATE 189C>G His63Gln
M0011248 CNNPNODC_00011 9061 15 Skin 0.47 protein_coding missense_variant MODERATE 340A>T Ser114Cys
M0011249 CNNPNODC_00011 9186 13 Skin 0.41 protein_coding synonymous_variant LOW 465C>A Gly155Gly
M0011250 CNNPNODC_00011 9192 13 Skin 0.41 protein_coding synonymous_variant LOW 471C>A Val157Val
M0011251 CNNPNODC_00011 9599 15 Skin 0.47 protein_coding missense_variant MODERATE 878T>C Val293Ala
M0011252 CNNPNODC_00011 9603 15 Skin 0.47 protein_coding synonymous_variant LOW 882G>A Glu294Glu
M0011253 CNNPNODC_00011 9609 15 Skin 0.47 protein_coding synonymous_variant LOW 888G>A Glu296Glu
M0011254 CNNPNODC_00011 9613 15 Skin 0.47 protein_coding missense_variant MODERATE 892A>G Ser298Gly
M0011255 CNNPNODC_00011 9614 15 Skin 0.47 protein_coding missense_variant MODERATE 893G>C Ser298Thr
M0011256 CNNPNODC_00011 9615 15 Skin 0.47 protein_coding synonymous_variant LOW 894T>C Ser298Ser
M0011257 CNNPNODC_00008 9719 15 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -2798C>T None
M0011258 CNNPNODC_00008 9737 15 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -2816G>A None
M0011259 CNNPNODC_00008 9751 15 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -2830G>C None
M0011260 CNNPNODC_00008 9763 15 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -2842C>A None
M0011261 CNNPNODC_00008 9802 14 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -2881G>A None
M0011262 CNNPNODC_00013 10565 6 Skin 0.19 protein_coding synonymous_variant LOW 153A>G Leu51Leu
M0011263 CNNPNODC_00013 10622 4 Skin 0.13 protein_coding synonymous_variant LOW 210A>G Pro70Pro
M0011264 CNNPNODC_00013 10685 6 Skin 0.19 protein_coding synonymous_variant LOW 273A>G Val91Val
M0011265 CNNPNODC_00013 10701 6 Skin 0.19 protein_coding missense_variant MODERATE 289G>A Val97Ile
M0011266 CNNPNODC_00013 10706 6 Skin 0.19 protein_coding synonymous_variant LOW 294T>C Tyr98Tyr
M0011267 CNNPNODC_00013 10870 19 Skin 0.59 protein_coding missense_variant MODERATE 458G>T Cys153Phe
M0011268 CNNPNODC_00013 10919 16 Skin 0.50 protein_coding synonymous_variant LOW 507C>T Gly169Gly
M0011269 CNNPNODC_00013 10922 16 Skin 0.50 protein_coding synonymous_variant LOW 510T>C Arg170Arg
M0011270 CNNPNODC_00013 10925 16 Skin 0.50 protein_coding synonymous_variant LOW 513C>G Ala171Ala
M0011271 CNNPNODC_00013 10928 16 Skin 0.50 protein_coding synonymous_variant LOW 516G>C Ala172Ala
M0011272 CNNPNODC_00013 10931 16 Skin 0.50 protein_coding synonymous_variant LOW 519C>T Tyr173Tyr
M0011273 CNNPNODC_00013 10937 16 Skin 0.50 protein_coding synonymous_variant LOW 525T>C His175His
M0011274 CNNPNODC_00013 10946 16 Skin 0.50 protein_coding synonymous_variant LOW 534G>C Ala178Ala
M0011275 CNNPNODC_00013 11587 15 Skin 0.47 protein_coding missense_variant MODERATE 1175C>A Pro392Gln
M0011276 CNNPNODC_00014 12263 15 Skin 0.47 protein_coding synonymous_variant LOW 477A>T Gly159Gly
M0011277 CNNPNODC_00014 12761 12 Skin 0.38 protein_coding synonymous_variant LOW 975C>G Ala325Ala
M0011278 CNNPNODC_00014 12764 12 Skin 0.38 protein_coding synonymous_variant LOW 978G>A Gly326Gly
M0011279 CNNPNODC_00014 12881 12 Skin 0.38 protein_coding synonymous_variant LOW 1095T>C Gly365Gly
M0011280 CNNPNODC_00014 12893 12 Skin 0.38 protein_coding synonymous_variant LOW 1107C>G Leu369Leu
M0011281 CNNPNODC_00014 12905 12 Skin 0.38 protein_coding synonymous_variant LOW 1119C>T Asp373Asp
M0011282 CNNPNODC_00014 12929 13 Skin 0.41 protein_coding synonymous_variant LOW 1143C>G Leu381Leu
M0011283 CNNPNODC_00015 13133 6 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -129C>T None
M0011284 CNNPNODC_00015 13135 6 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -127C>G None
M0011285 CNNPNODC_00015 13190 6 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -72G>T None
M0011286 CNNPNODC_00015 14064 20 Skin 0.63 protein_coding missense_variant MODERATE 803G>A Gly268Asp
M0011287 CNNPNODC_00015 14323 11 Skin 0.34 protein_coding synonymous_variant LOW 1062G>A Arg354Arg
M0011288 CNNPNODC_00016 15848 11 Skin 0.34 protein_coding synonymous_variant LOW 858T>C Ile286Ile
M0011289 CNNPNODC_00016 15860 11 Skin 0.34 protein_coding synonymous_variant LOW 870C>G Pro290Pro
M0011290 CNNPNODC_00016 15938 11 Skin 0.34 protein_coding synonymous_variant LOW 948A>G Val316Val
M0011291 CNNPNODC_00019 20484 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -66G>C None
M0011292 CNNPNODC_00019 20544 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -126G>A None
M0011293 CNNPNODC_00021 21480 6 Skin 0.19 protein_coding missense_variant MODERATE 41A>G Gln14Arg
M0011294 CNNPNODC_00022 23042 4 Skin 0.13 protein_coding missense_variant MODERATE 32C>T Thr11Ile
M0011295 CNNPNODC_00022 23073 4 Skin 0.13 protein_coding synonymous_variant LOW 63A>G Pro21Pro
M0011296 CNNPNODC_00022 23100 4 Skin 0.13 protein_coding synonymous_variant LOW 90A>T Pro30Pro
M0011297 CNNPNODC_00022 23116 4 Skin 0.13 protein_coding missense_variant MODERATE 106G>A Val36Ile
M0011298 CNNPNODC_00022 23154 4 Skin 0.13 protein_coding synonymous_variant LOW 144C>G Ala48Ala
M0011299 CNNPNODC_00022 23187 4 Skin 0.13 protein_coding synonymous_variant LOW 177C>T Thr59Thr
M0011300 CNNPNODC_00022 23208 4 Skin 0.13 protein_coding synonymous_variant LOW 198A>G Glu66Glu
M0011301 CNNPNODC_00022 23223 4 Skin 0.13 protein_coding synonymous_variant LOW 213C>T Arg71Arg
M0011302 CNNPNODC_00005 3704 8 Skin 0.25 protein_coding synonymous_variant LOW 231G>C Arg77Arg
M0011303 CNNPNODC_00005 3722 8 Skin 0.25 protein_coding synonymous_variant LOW 213A>G Glu71Glu
M0011304 CNNPNODC_00005 3728 8 Skin 0.25 protein_coding synonymous_variant LOW 207C>T Ala69Ala
M0011305 CNNPNODC_00005 3736 8 Skin 0.25 protein_coding synonymous_variant LOW 199C>A Arg67Arg
M0011306 CNNPNODC_00006 4357 24 Skin 0.75 protein_coding synonymous_variant LOW 114A>G Leu38Leu
M0011307 CNNPNODC_00006 5063 12 Skin 0.38 protein_coding missense_variant MODERATE 820G>A Val274Ile
M0011308 CNNPNODC_00009 7250 13 Skin 0.41 protein_coding synonymous_variant LOW 48C>G Pro16Pro
M0011309 CNNPNODC_00009 7310 11 Skin 0.34 protein_coding synonymous_variant LOW 108A>G Glu36Glu
M0011310 CNNPNODC_00011 9006 11 Skin 0.34 protein_coding synonymous_variant LOW 285C>T Gly95Gly
M0011311 CNNPNODC_00011 9645 12 Skin 0.38 protein_coding synonymous_variant LOW 924C>G Thr308Thr
M0011312 CNNPNODC_00003 1968 5 Skin 0.16 protein_coding synonymous_variant LOW 300C>T Ser100Ser
M0011313 CNNPNODC_00003 2201 6 Skin 0.19 protein_coding missense_variant MODERATE 67G>A Gly23Ser
M0011314 CNNPNODC_00004 2426 3 Skin 0.09 protein_coding synonymous_variant LOW 507C>G Leu169Leu
M0011315 CNNPNODC_00004 2591 8 Skin 0.25 protein_coding missense_variant MODERATE 342C>G Cys114Trp
M0011316 CNNPNODC_00004 2746 8 Skin 0.25 protein_coding missense_variant MODERATE 187A>G Thr63Ala
M0011317 CNNPNODC_00004 2752 8 Skin 0.25 protein_coding missense_variant MODERATE 181G>A Gly61Ser
M0011318 CNNPNODC_00004 2755 8 Skin 0.25 protein_coding missense_variant MODERATE 178C>A Leu60Met
M0011319 CNNPNODC_00004 2757 8 Skin 0.25 protein_coding missense_variant MODERATE 176G>A Arg59Gln
M0011320 CNNPNODC_00004 2762 8 Skin 0.25 protein_coding synonymous_variant LOW 171T>C His57His
M0011321 CNNPNODC_00005 3195 15 Skin 0.47 protein_coding missense_variant MODERATE 740C>T Ala247Val
M0011322 CNNPNODC_00005 3332 7 Skin 0.22 protein_coding synonymous_variant LOW 603T>G Ala201Ala
M0011323 CNNPNODC_00005 3338 7 Skin 0.22 protein_coding synonymous_variant LOW 597C>A Ile199Ile
M0011324 CNNPNODC_00005 3353 7 Skin 0.22 protein_coding synonymous_variant LOW 582A>G Glu194Glu
M0011325 CNNPNODC_00005 3356 7 Skin 0.22 protein_coding synonymous_variant LOW 579C>T Asn193Asn
M0011326 CNNPNODC_00005 3362 7 Skin 0.22 protein_coding synonymous_variant LOW 573G>A Glu191Glu
M0011327 CNNPNODC_00005 3365 7 Skin 0.22 protein_coding synonymous_variant LOW 570T>C Asp190Asp
M0011328 CNNPNODC_00005 3374 7 Skin 0.22 protein_coding synonymous_variant LOW 561T>C Cys187Cys
M0011329 CNNPNODC_00005 3377 7 Skin 0.22 protein_coding synonymous_variant LOW 558C>T His186His
M0011330 CNNPNODC_00005 3383 7 Skin 0.22 protein_coding synonymous_variant LOW 552A>C Arg184Arg
M0011331 CNNPNODC_00005 3386 7 Skin 0.22 protein_coding synonymous_variant LOW 549C>T Ser183Ser
M0011332 CNNPNODC_00005 3390 7 Skin 0.22 protein_coding missense_variant MODERATE 545G>C Gly182Ala
M0011333 CNNPNODC_00005 3392 7 Skin 0.22 protein_coding missense_variant MODERATE 543T>G Ser181Arg
M0011334 CNNPNODC_00005 3394 7 Skin 0.22 protein_coding missense_variant MODERATE 541A>G Ser181Gly
M0011335 CNNPNODC_00005 3454 7 Skin 0.22 protein_coding synonymous_variant LOW 481T>C Leu161Leu
M0011336 CNNPNODC_00005 3458 7 Skin 0.22 protein_coding synonymous_variant LOW 477A>G Ala159Ala
M0011337 CNNPNODC_00005 3515 6 Skin 0.19 protein_coding synonymous_variant LOW 420C>T Ala140Ala
M0011338 CNNPNODC_00005 3521 6 Skin 0.19 protein_coding synonymous_variant LOW 414T>A Arg138Arg
M0011339 CNNPNODC_00005 3533 6 Skin 0.19 protein_coding synonymous_variant LOW 402T>C Ala134Ala
M0011340 CNNPNODC_00005 3557 6 Skin 0.19 protein_coding synonymous_variant LOW 378G>C Val126Val
M0011341 CNNPNODC_00006 4880 10 Skin 0.31 protein_coding missense_variant MODERATE 637A>C Met213Leu
M0011342 CNNPNODC_00006 4952 13 Skin 0.41 protein_coding missense_variant MODERATE 709A>G Ile237Val
M0011343 CNNPNODC_00006 4969 11 Skin 0.34 protein_coding synonymous_variant LOW 726G>C Gly242Gly
M0011344 CNNPNODC_00006 5233 6 Skin 0.19 protein_coding synonymous_variant LOW 990T>C Cys330Cys
M0011345 CNNPNODC_00006 5236 6 Skin 0.19 protein_coding synonymous_variant LOW 993G>A Pro331Pro
M0011346 CNNPNODC_00006 5251 6 Skin 0.19 protein_coding synonymous_variant LOW 1008C>T Tyr336Tyr
M0011347 CNNPNODC_00006 5275 5 Skin 0.16 protein_coding synonymous_variant LOW 1032A>T Ala344Ala
M0011348 CNNPNODC_00003 7018 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4751A>G None
M0011349 CNNPNODC_00003 7026 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4759G>C None
M0011350 CNNPNODC_00003 7027 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4760C>T None
M0011351 CNNPNODC_00003 7030 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4763G>C None
M0011352 CNNPNODC_00011 9244 4 Skin 0.13 protein_coding missense_variant MODERATE 523G>C Asp175His
M0011353 CNNPNODC_00011 9267 5 Skin 0.16 protein_coding synonymous_variant LOW 546A>G Ala182Ala
M0011354 CNNPNODC_00011 9270 5 Skin 0.16 protein_coding synonymous_variant LOW 549G>C Ala183Ala
M0011355 CNNPNODC_00011 9273 5 Skin 0.16 protein_coding synonymous_variant LOW 552G>C Ala184Ala
M0011356 CNNPNODC_00011 9276 5 Skin 0.16 protein_coding synonymous_variant LOW 555G>C Leu185Leu
M0011357 CNNPNODC_00011 9448 19 Skin 0.59 protein_coding missense_variant MODERATE 727G>A Val243Ile
M0011358 CNNPNODC_00011 9462 19 Skin 0.59 protein_coding synonymous_variant LOW 741C>G Thr247Thr
M0011359 CNNPNODC_00011 9486 19 Skin 0.59 protein_coding synonymous_variant LOW 765C>A Pro255Pro
M0011360 CNNPNODC_00013 11492 7 Skin 0.22 protein_coding synonymous_variant LOW 1080T>C Asp360Asp
M0011361 CNNPNODC_00014 12617 4 Skin 0.13 protein_coding synonymous_variant LOW 831A>G Lys277Lys
M0011362 CNNPNODC_00015 13775 13 Skin 0.41 protein_coding synonymous_variant LOW 514C>T Leu172Leu
M0011363 CNNPNODC_00015 13777 13 Skin 0.41 protein_coding synonymous_variant LOW 516G>A Leu172Leu
M0011364 CNNPNODC_00015 13991 7 Skin 0.22 protein_coding synonymous_variant LOW 730T>C Leu244Leu
M0011365 CNNPNODC_00016 15113 5 Skin 0.16 protein_coding synonymous_variant LOW 123A>G Ala41Ala
M0011366 CNNPNODC_00002 4016 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -2624G>T None
M0011367 CNNPNODC_00002 4062 10 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -2670A>G None
M0011368 CNNPNODC_00002 4068 10 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -2676A>G None
M0011369 CNNPNODC_00002 4069 10 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -2677G>A None
M0011370 CNNPNODC_00002 4091 10 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -2699C>T None
M0011371 CNNPNODC_00002 4125 9 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -2733C>T None
M0011372 CNNPNODC_00002 4171 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2779G>C None
M0011373 CNNPNODC_00002 6359 10 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4967A>G None
M0011374 CNNPNODC_00002 6367 10 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4975C>T None
M0011375 CNNPNODC_00003 6399 10 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4132T>A None
M0011376 CNNPNODC_00003 6405 10 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4138C>G None
M0011377 CNNPNODC_00003 6409 10 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4142G>A None
M0011378 CNNPNODC_00003 6429 10 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4162T>G None
M0011379 CNNPNODC_00003 6436 10 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4169A>G None
M0011380 CNNPNODC_00009 7484 12 Skin 0.38 protein_coding synonymous_variant LOW 282C>T Asp94Asp
M0011381 CNNPNODC_00005 8721 9 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -4787C>A None
M0011382 CNNPNODC_00011 8738 10 Skin 0.31 protein_coding missense_variant MODERATE 17C>T Ala6Val
M0011383 CNNPNODC_00011 8740 9 Skin 0.28 protein_coding missense_variant MODERATE 19C>T Pro7Ser
M0011384 CNNPNODC_00011 8775 9 Skin 0.28 protein_coding synonymous_variant LOW 54C>T Arg18Arg
M0011385 CNNPNODC_00004 2494 4 Skin 0.13 protein_coding missense_variant MODERATE 439G>C Val147Leu
M0011386 CNNPNODC_00004 2540 3 Skin 0.09 protein_coding synonymous_variant LOW 393G>A Glu131Glu
M0011387 CNNPNODC_00004 2543 3 Skin 0.09 protein_coding synonymous_variant LOW 390C>G Gly130Gly
M0011388 CNNPNODC_00004 2579 3 Skin 0.09 protein_coding synonymous_variant LOW 354C>T Asp118Asp
M0011389 CNNPNODC_00004 2918 8 Skin 0.25 protein_coding synonymous_variant LOW 15A>T Arg5Arg
M0011390 CNNPNODC_00002 2963 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -1571T>C None
M0011391 CNNPNODC_00002 2972 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -1580T>C None
M0011392 CNNPNODC_00002 2973 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -1581A>G None
M0011393 CNNPNODC_00002 2980 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -1588G>A None
M0011394 CNNPNODC_00002 3016 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -1624G>A None
M0011395 CNNPNODC_00002 3048 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -1656C>T None
M0011396 CNNPNODC_00002 3057 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -1665G>A None
M0011397 CNNPNODC_00002 3088 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -1696C>T None
M0011398 CNNPNODC_00004 2822 4 Skin 0.13 protein_coding synonymous_variant LOW 111C>T Gly37Gly
M0011399 CNNPNODC_00004 2849 4 Skin 0.13 protein_coding synonymous_variant LOW 84T>C Ser28Ser
M0011400 CNNPNODC_00002 979 3 Skin 0.09 protein_coding synonymous_variant LOW 414A>G Lys138Lys
M0011401 CNNPNODC_00004 2666 3 Skin 0.09 protein_coding synonymous_variant LOW 267G>C Val89Val
M0011402 CNNPNODC_00003 6971 6 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4704A>G None
M0011403 CNNPNODC_00013 10425 5 Skin 0.16 protein_coding synonymous_variant LOW 13T>C Leu5Leu
M0011404 CNNPNODC_00016 14817 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -174A>G None
M0011405 CNNPNODC_00016 15530 9 Skin 0.28 protein_coding synonymous_variant LOW 540C>T Tyr180Tyr
M0011406 CNNPNODC_00016 16178 4 Skin 0.13 protein_coding synonymous_variant LOW 1188T>C His396His
M0011407 CNNPNODC_00019 18979 3 Skin 0.09 protein_coding synonymous_variant LOW 1440C>T Ile480Ile
M0011408 CNNPNODC_00019 19654 8 Skin 0.25 protein_coding synonymous_variant LOW 765C>T Gly255Gly
M0011409 CNNPNODC_00019 19677 7 Skin 0.22 protein_coding missense_variant MODERATE 742G>C Val248Leu
M0011410 CNNPNODC_00022 23467 4 Skin 0.13 protein_coding missense_variant MODERATE 457G>A Glu153Lys
M0011411 CNNPNODC_00022 23470 4 Skin 0.13 protein_coding missense_variant MODERATE 460G>T Ala154Ser
M0011412 CNNPNODC_00022 23521 5 Skin 0.16 protein_coding missense_variant MODERATE 511C>G Gln171Glu
M0011413 CNNPNODC_00022 23610 4 Skin 0.13 protein_coding synonymous_variant LOW 600T>C Ala200Ala
M0011414 CNNPNODC_00022 24036 3 Skin 0.09 protein_coding synonymous_variant LOW 1026A>G Val342Val
M0011415 CNNPNODC_00022 24088 3 Skin 0.09 protein_coding synonymous_variant LOW 1078T>C Leu360Leu
M0011416 CNNPNODC_00023 24127 3 Skin 0.09 protein_coding missense_variant MODERATE 5G>A Arg2Lys
M0011417 CNNPNODC_00023 24176 3 Skin 0.09 protein_coding synonymous_variant LOW 54C>T Gly18Gly
M0011418 CNNPNODC_00023 24203 3 Skin 0.09 protein_coding synonymous_variant LOW 81A>G Pro27Pro
M0011419 CNNPNODC_00023 24215 3 Skin 0.09 protein_coding synonymous_variant LOW 93A>G Arg31Arg
M0011420 CNNPNODC_00010 8572 9 Skin 0.28 protein_coding missense_variant MODERATE 441C>A Asn147Lys
M0011421 CNNPNODC_00015 14656 4 Skin 0.13 protein_coding synonymous_variant LOW 1395G>A Glu465Glu
M0011422 CNNPNODC_00015 14806 7 Skin 0.22 protein_coding synonymous_variant LOW 1545C>T Asp515Asp
M0011423 CNNPNODC_00015 14807 7 Skin 0.22 protein_coding missense_variant MODERATE 1546C>G Arg516Gly
M0011424 CNNPNODC_00016 14852 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -139A>G None
M0011425 CNNPNODC_00010 8440 10 Skin 0.31 protein_coding synonymous_variant LOW 309G>A Thr103Thr
M0011426 CNNPNODC_00010 8443 10 Skin 0.31 protein_coding synonymous_variant LOW 312C>G Pro104Pro
M0011427 CNNPNODC_00010 8446 10 Skin 0.31 protein_coding synonymous_variant LOW 315G>A Glu105Glu
M0011428 CNNPNODC_00010 8473 10 Skin 0.31 protein_coding synonymous_variant LOW 342C>T Asn114Asn
M0011429 CNNPNODC_00010 8515 8 Skin 0.25 protein_coding synonymous_variant LOW 384G>C Ala128Ala
M0011430 CNNPNODC_00008 6667 7 Skin 0.22 protein_coding synonymous_variant LOW 255T>C Asp85Asp
M0011431 CNNPNODC_00003 7105 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4838C>T None
M0011432 CNNPNODC_00003 7111 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4844C>T None
M0011433 CNNPNODC_00003 7135 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4868C>T None
M0011434 CNNPNODC_00003 7158 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4891G>A None
M0011435 CNNPNODC_00015 14608 6 Skin 0.19 protein_coding synonymous_variant LOW 1347G>A Ala449Ala
M0011436 CNNPNODC_00015 14534 6 Skin 0.19 protein_coding synonymous_variant LOW 1273C>T Leu425Leu
M0011437 CNNPNODC_00015 14557 6 Skin 0.19 protein_coding synonymous_variant LOW 1296G>A Gln432Gln
M0011438 CNNPNODC_00019 19033 3 Skin 0.09 protein_coding synonymous_variant LOW 1386A>T Ser462Ser
M0011439 CNNPNODC_00019 19546 5 Skin 0.16 protein_coding synonymous_variant LOW 873C>G Thr291Thr
M0011440 CNNPNODC_00019 21345 3 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -927G>A None
M0011441 CNNPNODC_00021 22030 3 Skin 0.09 protein_coding synonymous_variant LOW 591A>G Glu197Glu
M0011442 CNNPNODC_00021 22057 3 Skin 0.09 protein_coding synonymous_variant LOW 618T>C Asp206Asp
M0011443 CNNPNODC_00021 22762 3 Skin 0.09 protein_coding synonymous_variant LOW 1323G>C Val441Val
M0011444 CNNPNODC_00021 22770 3 Skin 0.09 protein_coding missense_variant MODERATE 1331A>G Asp444Gly
M0011445 CNNPNODC_00021 22803 3 Skin 0.09 protein_coding missense_variant MODERATE 1364G>A Arg455Gln
M0011446 CNNPNODC_00021 22835 3 Skin 0.09 protein_coding missense_variant MODERATE 1396C>A Pro466Thr
M0011447 CNNPNODC_00023 24704 3 Skin 0.09 protein_coding synonymous_variant LOW 582C>T Ala194Ala
M0011448 CNNPNODC_00023 24942 3 Skin 0.09 protein_coding synonymous_variant LOW 820C>T Leu274Leu
M0011449 CNNPNODC_00023 25254 3 Skin 0.09 protein_coding missense_variant MODERATE 1132G>C Gly378Arg
M0011450 CNNPNODC_00020 21064 3 Skin 0.09 protein_coding synonymous_variant LOW 423C>T Gly141Gly
M0011451 CNNPNODC_00020 21073 3 Skin 0.09 protein_coding synonymous_variant LOW 432T>C Ala144Ala
M0011452 CNNPNODC_00020 21091 3 Skin 0.09 protein_coding synonymous_variant LOW 450C>T His150His






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
CNNPNODC_00028 Copper (Cu) 70.9 1.1e-86 1 222 0.9955 0.9824 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CNNPNODC_00009 AEA85125.1|CE4 100 6.7e-237 1 309 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term