Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1698
  Reference Plasmid   1111525849486744_bin.26__k141_207987
  Reference Plasmid Size   24050
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0011453 GEEPADFO_00001 650 18 Skin 0.26 protein_coding synonymous_variant LOW 364C>T Leu122Leu
M0011454 GEEPADFO_00001 664 18 Skin 0.26 protein_coding synonymous_variant LOW 378T>C Gly126Gly
M0011455 GEEPADFO_00003 1482 29 Skin 0.42 protein_coding missense_variant MODERATE 650C>G Ala217Gly
M0011456 GEEPADFO_00003 1871 10 Skin 0.14 protein_coding synonymous_variant LOW 261C>A Arg87Arg
M0011457 GEEPADFO_00003 1892 10 Skin 0.14 protein_coding synonymous_variant LOW 240T>C Asp80Asp
M0011458 GEEPADFO_00004 2554 17 Skin 0.25 protein_coding synonymous_variant LOW 309A>G Gln103Gln
M0011459 GEEPADFO_00004 2557 17 Skin 0.25 protein_coding synonymous_variant LOW 312G>A Ala104Ala
M0011460 GEEPADFO_00004 2620 9 Skin 0.13 protein_coding synonymous_variant LOW 375T>G Pro125Pro
M0011461 GEEPADFO_00004 3472 12 Skin 0.17 protein_coding synonymous_variant LOW 1227G>A Pro409Pro
M0011462 GEEPADFO_00004 3547 14 Skin 0.20 protein_coding synonymous_variant LOW 1302G>C Ala434Ala
M0011463 GEEPADFO_00004 3554 14 Skin 0.20 protein_coding missense_variant MODERATE 1309A>G Thr437Ala
M0011464 GEEPADFO_00004 3556 14 Skin 0.20 protein_coding synonymous_variant LOW 1311C>G Thr437Thr
M0011465 GEEPADFO_00004 3871 9 Skin 0.13 protein_coding synonymous_variant LOW 1626G>C Ala542Ala
M0011466 GEEPADFO_00003 4065 12 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -1934G>A None
M0011467 GEEPADFO_00003 4067 12 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -1936G>A None
M0011468 GEEPADFO_00003 4103 11 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1972T>C None
M0011469 GEEPADFO_00003 4119 11 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1988C>T None
M0011470 GEEPADFO_00003 4168 8 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2037T>G None
M0011471 GEEPADFO_00003 4175 8 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2044A>G None
M0011472 GEEPADFO_00005 4381 17 Skin 0.25 protein_coding missense_variant MODERATE 181C>A Leu61Met
M0011473 GEEPADFO_00005 4650 17 Skin 0.25 protein_coding synonymous_variant LOW 450C>T Ile150Ile
M0011474 GEEPADFO_00005 4845 16 Skin 0.23 protein_coding synonymous_variant LOW 645C>T Gly215Gly
M0011475 GEEPADFO_00005 4920 9 Skin 0.13 protein_coding synonymous_variant LOW 720A>G Glu240Glu
M0011476 GEEPADFO_00005 4935 9 Skin 0.13 protein_coding synonymous_variant LOW 735C>T Thr245Thr
M0011477 GEEPADFO_00006 5400 19 Skin 0.28 protein_coding missense_variant MODERATE 345C>A Asp115Glu
M0011478 GEEPADFO_00006 5496 19 Skin 0.28 protein_coding synonymous_variant LOW 441A>G Ala147Ala
M0011479 GEEPADFO_00006 5502 19 Skin 0.28 protein_coding synonymous_variant LOW 447A>C Pro149Pro
M0011480 GEEPADFO_00006 5535 19 Skin 0.28 protein_coding synonymous_variant LOW 480C>T Arg160Arg
M0011481 GEEPADFO_00006 5553 19 Skin 0.28 protein_coding synonymous_variant LOW 498C>T Asp166Asp
M0011482 GEEPADFO_00006 5562 17 Skin 0.25 protein_coding synonymous_variant LOW 507T>G Thr169Thr
M0011483 GEEPADFO_00007 6319 7 Skin 0.10 protein_coding synonymous_variant LOW 45C>T Ser15Ser
M0011484 GEEPADFO_00007 6421 22 Skin 0.32 protein_coding synonymous_variant LOW 147G>C Ala49Ala
M0011485 GEEPADFO_00007 6844 23 Skin 0.33 protein_coding synonymous_variant LOW 570A>G Glu190Glu
M0011486 GEEPADFO_00007 6868 22 Skin 0.32 protein_coding synonymous_variant LOW 594C>T Pro198Pro
M0011487 GEEPADFO_00007 7054 15 Skin 0.22 protein_coding synonymous_variant LOW 780G>C Ala260Ala
M0011488 GEEPADFO_00007 7071 15 Skin 0.22 protein_coding missense_variant MODERATE 797A>G His266Arg
M0011489 GEEPADFO_00007 7081 15 Skin 0.22 protein_coding synonymous_variant LOW 807C>T Gly269Gly
M0011490 GEEPADFO_00007 7450 14 Skin 0.20 protein_coding synonymous_variant LOW 1176C>T Gly392Gly
M0011491 GEEPADFO_00008 7635 9 Skin 0.13 protein_coding synonymous_variant LOW 33T>C Ala11Ala
M0011492 GEEPADFO_00008 8045 13 Skin 0.19 protein_coding missense_variant MODERATE 443G>T Gly148Val
M0011493 GEEPADFO_00008 8166 10 Skin 0.14 protein_coding synonymous_variant LOW 564T>C Asp188Asp
M0011494 GEEPADFO_00008 8598 18 Skin 0.26 protein_coding synonymous_variant LOW 996T>G Val332Val
M0011495 GEEPADFO_00008 8829 24 Skin 0.35 protein_coding synonymous_variant LOW 1227G>A Thr409Thr
M0011496 GEEPADFO_00009 9375 16 Skin 0.23 protein_coding synonymous_variant LOW 357G>A Ser119Ser
M0011497 GEEPADFO_00009 9403 17 Skin 0.25 protein_coding missense_variant MODERATE 385G>A Ala129Thr
M0011498 GEEPADFO_00009 9830 13 Skin 0.19 protein_coding missense_variant MODERATE 812C>G Ala271Gly
M0011499 GEEPADFO_00009 9835 13 Skin 0.19 protein_coding missense_variant MODERATE 817A>G Ile273Val
M0011500 GEEPADFO_00009 9909 15 Skin 0.22 protein_coding synonymous_variant LOW 891G>C Ala297Ala
M0011501 GEEPADFO_00011 9967 17 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -486C>A None
M0011502 GEEPADFO_00011 9970 17 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -483A>G None
M0011503 GEEPADFO_00011 9973 17 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -480C>A None
M0011504 GEEPADFO_00010 9988 17 Skin 0.25 protein_coding missense_variant MODERATE 211A>G Thr71Ala
M0011505 GEEPADFO_00011 10911 14 Skin 0.20 protein_coding synonymous_variant LOW 459C>T Arg153Arg
M0011506 GEEPADFO_00011 11045 10 Skin 0.14 protein_coding missense_variant MODERATE 593T>A Ile198Asn
M0011507 GEEPADFO_00011 11047 10 Skin 0.14 protein_coding missense_variant MODERATE 595A>G Asn199Asp
M0011508 GEEPADFO_00011 11175 30 Skin 0.43 protein_coding synonymous_variant LOW 723A>G Ala241Ala
M0011509 GEEPADFO_00014 13012 31 Skin 0.45 protein_coding synonymous_variant LOW 285C>T Asp95Asp
M0011510 GEEPADFO_00014 13033 32 Skin 0.46 protein_coding synonymous_variant LOW 306C>T Asp102Asp
M0011511 GEEPADFO_00014 13333 20 Skin 0.29 protein_coding synonymous_variant LOW 606T>C Val202Val
M0011512 GEEPADFO_00014 13597 23 Skin 0.33 protein_coding synonymous_variant LOW 870C>T Pro290Pro
M0011513 GEEPADFO_00014 13598 23 Skin 0.33 protein_coding synonymous_variant LOW 871T>C Leu291Leu
M0011514 GEEPADFO_00015 14913 17 Skin 0.25 protein_coding synonymous_variant LOW 282A>G Leu94Leu
M0011515 GEEPADFO_00015 15029 11 Skin 0.16 protein_coding synonymous_variant LOW 166A>C Arg56Arg
M0011516 GEEPADFO_00015 15042 12 Skin 0.17 protein_coding synonymous_variant LOW 153A>G Leu51Leu
M0011517 GEEPADFO_00015 15348 23 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -154A>G None
M0011518 GEEPADFO_00015 15373 10 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -179A>T None
M0011519 GEEPADFO_00015 15381 10 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -187C>T None
M0011520 GEEPADFO_00015 15383 10 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -189C>T None
M0011521 GEEPADFO_00016 15679 23 Skin 0.33 protein_coding synonymous_variant LOW 171C>T Phe57Phe
M0011522 GEEPADFO_00016 15689 23 Skin 0.33 protein_coding missense_variant MODERATE 181G>A Val61Ile
M0011523 GEEPADFO_00016 16113 8 Skin 0.12 protein_coding missense_variant MODERATE 605T>A Val202Asp
M0011524 GEEPADFO_00015 17382 16 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -2188G>A None
M0011525 GEEPADFO_00017 17546 19 Skin 0.28 protein_coding synonymous_variant LOW 786T>C Pro262Pro
M0011526 GEEPADFO_00017 17640 26 Skin 0.38 protein_coding missense_variant MODERATE 692T>C Val231Ala
M0011527 GEEPADFO_00015 18414 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -3220T>G None
M0011528 GEEPADFO_00015 18430 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3236T>G None
M0011529 GEEPADFO_00015 18449 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3255C>G None
M0011530 GEEPADFO_00015 18451 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3257G>C None
M0011531 GEEPADFO_00015 18478 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3284C>G None
M0011532 GEEPADFO_00015 18492 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -3298T>C None
M0011533 GEEPADFO_00015 18506 8 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3312A>G None
M0011534 GEEPADFO_00015 18511 6 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3317T>G None
M0011535 GEEPADFO_00015 18515 8 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3321T>C None
M0011536 GEEPADFO_00015 18522 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -3328C>T None
M0011537 GEEPADFO_00015 18590 8 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3396C>T None
M0011538 GEEPADFO_00019 19154 17 Skin 0.25 protein_coding synonymous_variant LOW 711C>T Gly237Gly
M0011539 GEEPADFO_00019 19730 15 Skin 0.22 protein_coding synonymous_variant LOW 135T>C Gly45Gly
M0011540 GEEPADFO_00019 19748 15 Skin 0.22 protein_coding synonymous_variant LOW 117G>A Leu39Leu
M0011541 GEEPADFO_00019 19769 15 Skin 0.22 protein_coding synonymous_variant LOW 96G>A Ala32Ala
M0011542 GEEPADFO_00019 19790 15 Skin 0.22 protein_coding synonymous_variant LOW 75A>G Ala25Ala
M0011543 GEEPADFO_00019 19802 15 Skin 0.22 protein_coding synonymous_variant LOW 63C>T Arg21Arg
M0011544 GEEPADFO_00020 20001 16 Skin 0.23 protein_coding synonymous_variant LOW 45A>G Ala15Ala
M0011545 GEEPADFO_00011 10510 8 Skin 0.12 protein_coding missense_variant MODERATE 58G>A Gly20Ser
M0011546 GEEPADFO_00011 10671 11 Skin 0.16 protein_coding synonymous_variant LOW 219T>C Ala73Ala
M0011547 GEEPADFO_00011 10815 22 Skin 0.32 protein_coding missense_variant MODERATE 363G>C Glu121Asp
M0011548 GEEPADFO_00001 148 11 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -139C>T None
M0011549 GEEPADFO_00001 188 12 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -99C>T None
M0011550 GEEPADFO_00001 234 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -53A>G None
M0011551 GEEPADFO_00001 454 7 Skin 0.10 protein_coding synonymous_variant LOW 168T>C Thr56Thr
M0011552 GEEPADFO_00001 563 8 Skin 0.12 protein_coding synonymous_variant LOW 277T>C Leu93Leu
M0011553 GEEPADFO_00001 586 9 Skin 0.13 protein_coding synonymous_variant LOW 300G>C Arg100Arg
M0011554 GEEPADFO_00002 1007 9 Skin 0.13 protein_coding synonymous_variant LOW 201C>G Gly67Gly
M0011555 GEEPADFO_00002 1016 9 Skin 0.13 protein_coding synonymous_variant LOW 210G>C Thr70Thr
M0011556 GEEPADFO_00002 1046 9 Skin 0.13 protein_coding synonymous_variant LOW 240A>G Glu80Glu
M0011557 GEEPADFO_00002 1058 8 Skin 0.12 protein_coding synonymous_variant LOW 252T>C Tyr84Tyr
M0011558 GEEPADFO_00002 1076 9 Skin 0.13 protein_coding synonymous_variant LOW 270T>C Thr90Thr
M0011559 GEEPADFO_00002 1121 11 Skin 0.16 protein_coding synonymous_variant LOW 315G>A Glu105Glu
M0011560 GEEPADFO_00003 1460 16 Skin 0.23 protein_coding synonymous_variant LOW 672C>T Gly224Gly
M0011561 GEEPADFO_00003 1514 16 Skin 0.23 protein_coding synonymous_variant LOW 618T>C Arg206Arg
M0011562 GEEPADFO_00004 2515 12 Skin 0.17 protein_coding synonymous_variant LOW 270A>T Ala90Ala
M0011563 GEEPADFO_00004 3094 20 Skin 0.29 protein_coding synonymous_variant LOW 849T>C Asn283Asn
M0011564 GEEPADFO_00004 3249 20 Skin 0.29 protein_coding missense_variant MODERATE 1004C>T Ala335Val
M0011565 GEEPADFO_00004 3988 10 Skin 0.14 protein_coding synonymous_variant LOW 1743C>T Gly581Gly
M0011566 GEEPADFO_00004 3994 10 Skin 0.14 protein_coding synonymous_variant LOW 1749G>A Glu583Glu
M0011567 GEEPADFO_00004 4012 10 Skin 0.14 protein_coding synonymous_variant LOW 1767T>C Val589Val
M0011568 GEEPADFO_00003 4984 11 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -2853A>G None
M0011569 GEEPADFO_00003 4989 11 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -2858T>C None
M0011570 GEEPADFO_00006 5709 11 Skin 0.16 protein_coding synonymous_variant LOW 654G>A Val218Val
M0011571 GEEPADFO_00006 5760 17 Skin 0.25 protein_coding synonymous_variant LOW 705T>C Ser235Ser
M0011572 GEEPADFO_00006 5817 12 Skin 0.17 protein_coding synonymous_variant LOW 762T>C Asn254Asn
M0011573 GEEPADFO_00006 5907 16 Skin 0.23 protein_coding synonymous_variant LOW 852C>G Gly284Gly
M0011574 GEEPADFO_00007 6625 12 Skin 0.17 protein_coding synonymous_variant LOW 351G>C Leu117Leu
M0011575 GEEPADFO_00007 7192 10 Skin 0.14 protein_coding synonymous_variant LOW 918C>G Pro306Pro
M0011576 GEEPADFO_00007 7264 15 Skin 0.22 protein_coding synonymous_variant LOW 990G>A Glu330Glu
M0011577 GEEPADFO_00007 7379 17 Skin 0.25 protein_coding missense_variant MODERATE 1105G>A Asp369Asn
M0011578 GEEPADFO_00008 7776 6 Skin 0.09 protein_coding synonymous_variant LOW 174G>A Gln58Gln
M0011579 GEEPADFO_00008 8304 11 Skin 0.16 protein_coding synonymous_variant LOW 702C>G Ser234Ser
M0011580 GEEPADFO_00008 8472 14 Skin 0.20 protein_coding synonymous_variant LOW 870C>G Ala290Ala
M0011581 GEEPADFO_00008 8532 16 Skin 0.23 protein_coding synonymous_variant LOW 930T>G Ala310Ala
M0011582 GEEPADFO_00010 10082 13 Skin 0.19 protein_coding synonymous_variant LOW 117C>T Asp39Asp
M0011583 GEEPADFO_00011 10740 21 Skin 0.30 protein_coding synonymous_variant LOW 288A>G Pro96Pro
M0011584 GEEPADFO_00014 13920 7 Skin 0.10 protein_coding missense_variant MODERATE 1193T>C Val398Ala
M0011585 GEEPADFO_00010 13943 8 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3745A>G None
M0011586 GEEPADFO_00010 13951 8 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3753A>C None
M0011587 GEEPADFO_00015 14286 13 Skin 0.19 protein_coding synonymous_variant LOW 909C>T Arg303Arg
M0011588 GEEPADFO_00015 14538 10 Skin 0.14 protein_coding synonymous_variant LOW 657C>T Gly219Gly
M0011589 GEEPADFO_00015 14820 15 Skin 0.22 protein_coding synonymous_variant LOW 375T>C Ile125Ile
M0011590 GEEPADFO_00015 15323 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -129T>C None
M0011591 GEEPADFO_00016 15764 20 Skin 0.29 protein_coding missense_variant MODERATE 256C>G Gln86Glu
M0011592 GEEPADFO_00016 15781 20 Skin 0.29 protein_coding synonymous_variant LOW 273G>T Thr91Thr
M0011593 GEEPADFO_00017 18125 19 Skin 0.28 protein_coding synonymous_variant LOW 207G>T Ala69Ala
M0011594 GEEPADFO_00001 766 12 Skin 0.17 protein_coding synonymous_variant LOW 480G>A Glu160Glu
M0011595 GEEPADFO_00003 1307 16 Skin 0.23 protein_coding synonymous_variant LOW 825A>G Gln275Gln
M0011596 GEEPADFO_00003 1955 7 Skin 0.10 protein_coding synonymous_variant LOW 177C>G Thr59Thr
M0011597 GEEPADFO_00007 6508 7 Skin 0.10 protein_coding synonymous_variant LOW 234C>T Arg78Arg
M0011598 GEEPADFO_00008 8103 13 Skin 0.19 protein_coding synonymous_variant LOW 501A>G Glu167Glu
M0011599 GEEPADFO_00008 8106 13 Skin 0.19 protein_coding synonymous_variant LOW 504C>T Leu168Leu
M0011600 GEEPADFO_00009 9166 6 Skin 0.09 protein_coding synonymous_variant LOW 148T>C Leu50Leu
M0011601 GEEPADFO_00010 10304 13 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -106A>C None
M0011602 GEEPADFO_00010 10317 12 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -119T>C None
M0011603 GEEPADFO_00010 10326 12 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -128C>A None
M0011604 GEEPADFO_00010 10340 12 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -142T>C None
M0011605 GEEPADFO_00010 10342 12 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -144C>T None
M0011606 GEEPADFO_00011 11535 18 Skin 0.26 protein_coding synonymous_variant LOW 1083A>G Pro361Pro
M0011607 GEEPADFO_00011 11544 18 Skin 0.26 protein_coding synonymous_variant LOW 1092G>A Ala364Ala
M0011608 GEEPADFO_00015 14112 15 Skin 0.22 protein_coding synonymous_variant LOW 1083C>G Leu361Leu
M0011609 GEEPADFO_00015 14115 15 Skin 0.22 protein_coding synonymous_variant LOW 1080T>C Gly360Gly
M0011610 GEEPADFO_00015 14340 18 Skin 0.26 protein_coding synonymous_variant LOW 855T>C Asn285Asn
M0011611 GEEPADFO_00015 14391 14 Skin 0.20 protein_coding synonymous_variant LOW 804T>C Asp268Asp
M0011612 GEEPADFO_00015 14400 13 Skin 0.19 protein_coding synonymous_variant LOW 795G>A Gln265Gln
M0011613 GEEPADFO_00015 14436 13 Skin 0.19 protein_coding synonymous_variant LOW 759T>A Gly253Gly
M0011614 GEEPADFO_00015 15138 6 Skin 0.09 protein_coding synonymous_variant LOW 57C>T Leu19Leu
M0011615 GEEPADFO_00016 16510 4 Skin 0.06 protein_coding synonymous_variant LOW 1002T>C Asp334Asp
M0011616 GEEPADFO_00016 16525 4 Skin 0.06 protein_coding synonymous_variant LOW 1017T>C Ala339Ala
M0011617 GEEPADFO_00016 16555 5 Skin 0.07 protein_coding synonymous_variant LOW 1047A>G Ala349Ala
M0011618 GEEPADFO_00001 280 10 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -7T>A None
M0011619 GEEPADFO_00004 1219 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -1027C>T None
M0011620 GEEPADFO_00004 2428 6 Skin 0.09 protein_coding synonymous_variant LOW 183T>C Tyr61Tyr
M0011621 GEEPADFO_00004 2443 6 Skin 0.09 protein_coding synonymous_variant LOW 198A>G Pro66Pro
M0011622 GEEPADFO_00005 4761 12 Skin 0.17 protein_coding synonymous_variant LOW 561A>C Gly187Gly
M0011623 GEEPADFO_00006 5130 3 Skin 0.04 protein_coding synonymous_variant LOW 75C>T His25His
M0011624 GEEPADFO_00006 5304 10 Skin 0.14 protein_coding synonymous_variant LOW 249A>C Ala83Ala
M0011625 GEEPADFO_00011 11073 9 Skin 0.13 protein_coding synonymous_variant LOW 621C>T Tyr207Tyr
M0011626 GEEPADFO_00011 11256 13 Skin 0.19 protein_coding synonymous_variant LOW 804A>G Val268Val
M0011627 GEEPADFO_00011 11259 13 Skin 0.19 protein_coding synonymous_variant LOW 807A>G Gly269Gly
M0011628 GEEPADFO_00011 11490 19 Skin 0.28 protein_coding synonymous_variant LOW 1038G>A Leu346Leu
M0011629 GEEPADFO_00010 12137 14 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1939A>G None
M0011630 GEEPADFO_00014 13484 17 Skin 0.25 protein_coding missense_variant MODERATE 757G>A Gly253Ser
M0011631 GEEPADFO_00009 9897 3 Skin 0.04 protein_coding synonymous_variant LOW 879G>A Pro293Pro
M0011632 GEEPADFO_00011 11296 11 Skin 0.16 protein_coding missense_variant MODERATE 844G>T Ala282Ser
M0011633 GEEPADFO_00013 12292 15 Skin 0.22 protein_coding synonymous_variant LOW 141A>G Gln47Gln
M0011634 GEEPADFO_00013 12311 15 Skin 0.22 protein_coding missense_variant MODERATE 160A>C Ser54Arg
M0011635 GEEPADFO_00010 12484 13 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2286A>C None
M0011636 GEEPADFO_00010 12489 13 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2291T>A None
M0011637 GEEPADFO_00010 12496 13 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2298T>G None
M0011638 GEEPADFO_00010 12532 12 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2334T>G None
M0011639 GEEPADFO_00010 12430 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2232T>G None
M0011640 GEEPADFO_00014 12829 12 Skin 0.17 protein_coding synonymous_variant LOW 102C>G Ala34Ala
M0011641 GEEPADFO_00014 13864 4 Skin 0.06 protein_coding synonymous_variant LOW 1137C>T Thr379Thr
M0011642 GEEPADFO_00015 15194 10 Skin 0.14 protein_coding initiator_codon_variant&non_canonical_start_codon LOW 1T>C Leu1?
M0011643 GEEPADFO_00010 12341 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2143T>G None
M0011644 GEEPADFO_00001 317 7 Skin 0.10 protein_coding missense_variant MODERATE 31G>A Ala11Thr
M0011645 GEEPADFO_00001 337 7 Skin 0.10 protein_coding synonymous_variant LOW 51A>G Pro17Pro
M0011646 GEEPADFO_00001 367 7 Skin 0.10 protein_coding synonymous_variant LOW 81A>G Thr27Thr
M0011647 GEEPADFO_00001 397 7 Skin 0.10 protein_coding synonymous_variant LOW 111T>G Ala37Ala
M0011648 GEEPADFO_00007 6556 11 Skin 0.16 protein_coding synonymous_variant LOW 282G>A Glu94Glu
M0011649 GEEPADFO_00007 6937 8 Skin 0.12 protein_coding synonymous_variant LOW 663A>G Pro221Pro
M0011650 GEEPADFO_00009 9306 7 Skin 0.10 protein_coding synonymous_variant LOW 288G>A Arg96Arg
M0011651 GEEPADFO_00016 17263 6 Skin 0.09 protein_coding synonymous_variant LOW 1755C>T Val585Val
M0011652 GEEPADFO_00016 17284 6 Skin 0.09 protein_coding synonymous_variant LOW 1776G>A Thr592Thr
M0011653 GEEPADFO_00016 17295 6 Skin 0.09 protein_coding missense_variant MODERATE 1787G>C Gly596Ala
M0011654 GEEPADFO_00017 17897 7 Skin 0.10 protein_coding synonymous_variant LOW 435C>T Leu145Leu
M0011655 GEEPADFO_00014 13756 7 Skin 0.10 protein_coding synonymous_variant LOW 1029G>C Thr343Thr
M0011656 GEEPADFO_00014 13759 7 Skin 0.10 protein_coding synonymous_variant LOW 1032A>G Gly344Gly
M0011657 GEEPADFO_00016 16753 6 Skin 0.09 protein_coding synonymous_variant LOW 1245C>T Tyr415Tyr
M0011658 GEEPADFO_00016 16759 6 Skin 0.09 protein_coding synonymous_variant LOW 1251A>C Ala417Ala
M0011659 GEEPADFO_00016 16789 6 Skin 0.09 protein_coding synonymous_variant LOW 1281G>C Arg427Arg
M0011660 GEEPADFO_00018 18909 11 Skin 0.16 protein_coding missense_variant MODERATE 218C>T Ala73Val
M0011661 GEEPADFO_00018 18940 11 Skin 0.16 protein_coding synonymous_variant LOW 249C>T Tyr83Tyr
M0011662 GEEPADFO_00019 19253 7 Skin 0.10 protein_coding synonymous_variant LOW 612C>T Arg204Arg
M0011663 GEEPADFO_00020 20302 5 Skin 0.07 protein_coding missense_variant MODERATE 346G>A Ala116Thr
M0011664 GEEPADFO_00020 20340 5 Skin 0.07 protein_coding synonymous_variant LOW 384T>C Tyr128Tyr
M0011665 GEEPADFO_00017 17606 5 Skin 0.07 protein_coding synonymous_variant LOW 726C>T Ile242Ile
M0011666 GEEPADFO_00015 19880 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4686G>A None
M0011667 GEEPADFO_00015 19890 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4696A>G None
M0011668 GEEPADFO_00020 20166 3 Skin 0.04 protein_coding synonymous_variant LOW 210G>A Leu70Leu
M0011669 GEEPADFO_00021 21177 10 Skin 0.14 protein_coding synonymous_variant LOW 210G>A Gln70Gln
M0011670 GEEPADFO_00022 22874 8 Skin 0.12 protein_coding missense_variant MODERATE 1023G>C Glu341Asp
M0011671 GEEPADFO_00022 22934 6 Skin 0.09 protein_coding synonymous_variant LOW 1083A>C Gly361Gly
M0011672 GEEPADFO_00022 22949 6 Skin 0.09 protein_coding synonymous_variant LOW 1098T>G Leu366Leu
M0011673 GEEPADFO_00022 23009 5 Skin 0.07 protein_coding synonymous_variant LOW 1158G>A Leu386Leu
M0011674 GEEPADFO_00022 23157 6 Skin 0.09 protein_coding synonymous_variant LOW 1306C>T Leu436Leu
M0011675 GEEPADFO_00022 23204 6 Skin 0.09 protein_coding synonymous_variant LOW 1353G>A Gly451Gly
M0011676 GEEPADFO_00022 23237 6 Skin 0.09 protein_coding synonymous_variant LOW 1386G>A Gln462Gln
M0011677 GEEPADFO_00022 23285 7 Skin 0.10 protein_coding synonymous_variant LOW 1434T>C Asn478Asn
M0011678 GEEPADFO_00022 23288 6 Skin 0.09 protein_coding synonymous_variant LOW 1437C>T Gly479Gly
M0011679 GEEPADFO_00022 23354 3 Skin 0.04 protein_coding synonymous_variant LOW 1503A>G Ala501Ala
M0011680 GEEPADFO_00022 23423 4 Skin 0.06 protein_coding synonymous_variant LOW 1572G>A Pro524Pro
M0011681 GEEPADFO_00022 23664 4 Skin 0.06 protein_coding missense_variant MODERATE 1813G>A Gly605Ser
M0011682 GEEPADFO_00022 23717 3 Skin 0.04 protein_coding synonymous_variant LOW 1866T>C Ser622Ser
M0011683 GEEPADFO_00022 23744 3 Skin 0.04 protein_coding synonymous_variant LOW 1893T>C Gly631Gly
M0011684 GEEPADFO_00015 14772 12 Skin 0.17 protein_coding synonymous_variant LOW 423G>C Thr141Thr
M0011685 GEEPADFO_00015 14775 12 Skin 0.17 protein_coding synonymous_variant LOW 420C>T His140His
M0011686 GEEPADFO_00017 17921 5 Skin 0.07 protein_coding synonymous_variant LOW 411A>G Gln137Gln
M0011687 GEEPADFO_00019 19115 7 Skin 0.10 protein_coding synonymous_variant LOW 750T>C Arg250Arg
M0011688 GEEPADFO_00019 19148 6 Skin 0.09 protein_coding synonymous_variant LOW 717A>G Ala239Ala
M0011689 GEEPADFO_00019 19313 6 Skin 0.09 protein_coding synonymous_variant LOW 552G>T Ala184Ala
M0011690 GEEPADFO_00019 19403 5 Skin 0.07 protein_coding synonymous_variant LOW 462C>T Gly154Gly
M0011691 GEEPADFO_00019 19409 5 Skin 0.07 protein_coding synonymous_variant LOW 456G>A Val152Val
M0011692 GEEPADFO_00019 19439 4 Skin 0.06 protein_coding synonymous_variant LOW 426C>G Ala142Ala
M0011693 GEEPADFO_00019 19487 5 Skin 0.07 protein_coding synonymous_variant LOW 378A>G Val126Val
M0011694 GEEPADFO_00019 19499 5 Skin 0.07 protein_coding synonymous_variant LOW 366T>C Leu122Leu
M0011695 GEEPADFO_00019 19529 5 Skin 0.07 protein_coding synonymous_variant LOW 336A>G Ala112Ala
M0011696 GEEPADFO_00019 19539 5 Skin 0.07 protein_coding missense_variant MODERATE 326G>A Gly109Asp
M0011697 GEEPADFO_00015 14529 3 Skin 0.04 protein_coding synonymous_variant LOW 666C>T Ser222Ser
M0011698 GEEPADFO_00020 20562 6 Skin 0.09 protein_coding synonymous_variant LOW 606C>T Gly202Gly
M0011699 GEEPADFO_00017 20577 7 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2246G>C None
M0011700 GEEPADFO_00017 20629 9 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2298G>A None
M0011701 GEEPADFO_00021 21390 10 Skin 0.14 protein_coding synonymous_variant LOW 423T>C Gly141Gly
M0011702 GEEPADFO_00016 16356 3 Skin 0.04 protein_coding missense_variant MODERATE 848G>C Ser283Thr
M0011703 GEEPADFO_00021 21099 9 Skin 0.13 protein_coding synonymous_variant LOW 132A>G Pro44Pro
M0011704 GEEPADFO_00006 5271 8 Skin 0.12 protein_coding missense_variant MODERATE 216C>A Asp72Glu
M0011705 GEEPADFO_00008 8509 11 Skin 0.16 protein_coding missense_variant MODERATE 907G>A Ala303Thr
M0011706 GEEPADFO_00022 23087 6 Skin 0.09 protein_coding synonymous_variant LOW 1236T>C Asp412Asp
M0011707 GEEPADFO_00020 20449 6 Skin 0.09 protein_coding synonymous_variant LOW 493T>C Leu165Leu
M0011708 GEEPADFO_00020 20466 5 Skin 0.07 protein_coding synonymous_variant LOW 510C>G Leu170Leu
M0011709 GEEPADFO_00022 23579 3 Skin 0.04 protein_coding synonymous_variant LOW 1728T>C Phe576Phe
M0011710 GEEPADFO_00017 20761 4 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2430G>A None
M0011711 GEEPADFO_00020 20109 5 Skin 0.07 protein_coding synonymous_variant LOW 153C>T Val51Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
GEEPADFO_00021 Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)] 88 1.3e-106 1 192 0.9948 1.6842 experiment
GEEPADFO_00021 Hydrogen Peroxide (H2O2) [class: Peroxides] 88 1.3e-106 1 192 0.9948 1.6842 experiment
GEEPADFO_00021 Hydrogen Peroxide (H2O2) [class: Peroxides] 100 3.7e-115 1 193 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
GEEPADFO_00013 PHI:10387 SEN1538 74 8e-13 7 56 0.8929 0.8333 rodents salmonellosis conserved hypothetical protein reduced virulence
GEEPADFO_00021 PHI:11377 sodB 72.4 6.1e-84 1 192 0.9948 0.9948 moths salmonellosis cytoplasmic superoxide dismutase increased virulence (hypervirulence)






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term