Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1700
  Reference Plasmid   1111525849486744_bin.39__k141_412540
  Reference Plasmid Size   43067
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0011713 KGCFFEOI_00018 15483 21 Skin 0.22 protein_coding missense_variant MODERATE 595A>G Asn199Asp
M0011714 KGCFFEOI_00012 9980 29 Skin 0.31 protein_coding synonymous_variant LOW 627C>T Asp209Asp
M0011715 KGCFFEOI_00014 10927 30 Skin 0.32 protein_coding synonymous_variant LOW 117A>G Lys39Lys
M0011716 KGCFFEOI_00014 10939 28 Skin 0.30 protein_coding synonymous_variant LOW 129C>T Asn43Asn
M0011717 KGCFFEOI_00014 10996 29 Skin 0.31 protein_coding synonymous_variant LOW 186T>C Thr62Thr
M0011718 KGCFFEOI_00014 11012 30 Skin 0.32 protein_coding missense_variant MODERATE 202A>G Met68Val
M0011719 KGCFFEOI_00014 11437 22 Skin 0.23 protein_coding synonymous_variant LOW 627G>A Thr209Thr
M0011720 KGCFFEOI_00012 9998 3 Skin 0.03 protein_coding synonymous_variant LOW 645C>T Arg215Arg
M0011721 KGCFFEOI_00012 9669 26 Skin 0.28 protein_coding missense_variant MODERATE 316T>C Ser106Pro
M0011722 KGCFFEOI_00014 11116 3 Skin 0.03 protein_coding synonymous_variant LOW 306A>C Leu102Leu
M0011723 KGCFFEOI_00015 12382 3 Skin 0.03 protein_coding synonymous_variant LOW 879C>T Arg293Arg
M0011724 KGCFFEOI_00015 12388 3 Skin 0.03 protein_coding synonymous_variant LOW 873T>C Ala291Ala
M0011725 KGCFFEOI_00015 12406 3 Skin 0.03 protein_coding synonymous_variant LOW 855T>C Leu285Leu
M0011726 KGCFFEOI_00015 12418 3 Skin 0.03 protein_coding synonymous_variant LOW 843T>C Asn281Asn
M0011727 KGCFFEOI_00020 19243 17 Skin 0.18 protein_coding synonymous_variant LOW 2163C>T Ala721Ala
M0011728 KGCFFEOI_00020 19264 17 Skin 0.18 protein_coding synonymous_variant LOW 2184C>A Pro728Pro
M0011729 KGCFFEOI_00020 19267 17 Skin 0.18 protein_coding synonymous_variant LOW 2187T>C Val729Val
M0011730 KGCFFEOI_00021 20481 21 Skin 0.22 protein_coding synonymous_variant LOW 294A>G Ala98Ala
M0011731 KGCFFEOI_00020 18817 4 Skin 0.04 protein_coding synonymous_variant LOW 1737G>A Lys579Lys
M0011732 KGCFFEOI_00020 18850 4 Skin 0.04 protein_coding synonymous_variant LOW 1770A>G Glu590Glu
M0011733 KGCFFEOI_00020 18859 4 Skin 0.04 protein_coding synonymous_variant LOW 1779A>G Ala593Ala
M0011734 KGCFFEOI_00020 18877 4 Skin 0.04 protein_coding synonymous_variant LOW 1797C>G Gly599Gly
M0011735 KGCFFEOI_00011 8013 5 Skin 0.05 protein_coding synonymous_variant LOW 420C>T Phe140Phe
M0011736 KGCFFEOI_00011 8898 3 Skin 0.03 protein_coding synonymous_variant LOW 1305T>G Leu435Leu
M0011737 KGCFFEOI_00012 10157 3 Skin 0.03 protein_coding synonymous_variant LOW 804A>C Ile268Ile
M0011738 KGCFFEOI_00012 10160 3 Skin 0.03 protein_coding synonymous_variant LOW 807C>T Leu269Leu
M0011739 KGCFFEOI_00012 10175 3 Skin 0.03 protein_coding synonymous_variant LOW 822T>C Ala274Ala
M0011740 KGCFFEOI_00012 10178 3 Skin 0.03 protein_coding synonymous_variant LOW 825G>A Glu275Glu
M0011741 KGCFFEOI_00012 10181 3 Skin 0.03 protein_coding synonymous_variant LOW 828C>G Leu276Leu
M0011742 KGCFFEOI_00012 10202 4 Skin 0.04 protein_coding synonymous_variant LOW 849T>G Val283Val
M0011743 KGCFFEOI_00012 10253 5 Skin 0.05 protein_coding synonymous_variant LOW 900T>C Arg300Arg
M0011744 KGCFFEOI_00012 10286 6 Skin 0.06 protein_coding synonymous_variant LOW 933T>C Pro311Pro
M0011745 KGCFFEOI_00012 10301 6 Skin 0.06 protein_coding synonymous_variant LOW 948G>A Glu316Glu
M0011746 KGCFFEOI_00012 10304 6 Skin 0.06 protein_coding synonymous_variant LOW 951A>G Gln317Gln
M0011747 KGCFFEOI_00014 10858 3 Skin 0.03 protein_coding synonymous_variant LOW 48A>C Ala16Ala
M0011748 KGCFFEOI_00017 14628 4 Skin 0.04 protein_coding synonymous_variant LOW 411C>G Val137Val
M0011749 KGCFFEOI_00003 3659 9 Skin 0.10 protein_coding synonymous_variant LOW 963A>G Ala321Ala
M0011750 KGCFFEOI_00007 5559 14 Skin 0.15 protein_coding synonymous_variant LOW 381C>T Thr127Thr
M0011751 KGCFFEOI_00011 8403 3 Skin 0.03 protein_coding synonymous_variant LOW 810C>T Ile270Ile
M0011752 KGCFFEOI_00017 14538 3 Skin 0.03 protein_coding synonymous_variant LOW 321G>A Glu107Glu
M0011753 KGCFFEOI_00018 15383 4 Skin 0.04 protein_coding synonymous_variant LOW 495A>G Ala165Ala
M0011754 KGCFFEOI_00018 15387 4 Skin 0.04 protein_coding synonymous_variant LOW 499C>T Leu167Leu
M0011755 KGCFFEOI_00018 15759 3 Skin 0.03 protein_coding missense_variant MODERATE 871A>G Ile291Val
M0011756 KGCFFEOI_00018 15764 3 Skin 0.03 protein_coding synonymous_variant LOW 876A>G Arg292Arg
M0011757 KGCFFEOI_00018 15770 3 Skin 0.03 protein_coding synonymous_variant LOW 882C>G Thr294Thr
M0011758 KGCFFEOI_00018 15794 3 Skin 0.03 protein_coding synonymous_variant LOW 906C>A Pro302Pro
M0011759 KGCFFEOI_00018 15797 3 Skin 0.03 protein_coding synonymous_variant LOW 909C>T Asp303Asp
M0011760 KGCFFEOI_00018 15800 3 Skin 0.03 protein_coding synonymous_variant LOW 912T>C Gly304Gly
M0011761 KGCFFEOI_00018 15806 3 Skin 0.03 protein_coding synonymous_variant LOW 918G>C Gly306Gly
M0011762 KGCFFEOI_00018 15818 3 Skin 0.03 protein_coding synonymous_variant LOW 930T>C Ala310Ala
M0011763 KGCFFEOI_00018 15833 3 Skin 0.03 protein_coding synonymous_variant LOW 945T>C Ile315Ile
M0011764 KGCFFEOI_00020 18304 4 Skin 0.04 protein_coding synonymous_variant LOW 1224A>G Glu408Glu
M0011765 KGCFFEOI_00015 11947 6 Skin 0.06 protein_coding missense_variant MODERATE 1314T>G His438Gln
M0011766 KGCFFEOI_00018 15647 4 Skin 0.04 protein_coding synonymous_variant LOW 759G>C Ala253Ala
M0011767 KGCFFEOI_00001 1528 3 Skin 0.03 protein_coding synonymous_variant LOW 1506G>A Ala502Ala
M0011768 KGCFFEOI_00001 1552 3 Skin 0.03 protein_coding synonymous_variant LOW 1530C>G Val510Val
M0011769 KGCFFEOI_00001 1561 3 Skin 0.03 protein_coding synonymous_variant LOW 1539G>C Ala513Ala
M0011770 KGCFFEOI_00001 1564 3 Skin 0.03 protein_coding synonymous_variant LOW 1542T>C Arg514Arg
M0011771 KGCFFEOI_00001 1567 3 Skin 0.03 protein_coding synonymous_variant LOW 1545A>G Ala515Ala
M0011772 KGCFFEOI_00001 1579 3 Skin 0.03 protein_coding synonymous_variant LOW 1557T>C Asp519Asp
M0011773 KGCFFEOI_00009 11832 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4582T>G None
M0011774 KGCFFEOI_00020 17476 3 Skin 0.03 protein_coding synonymous_variant LOW 396A>C Ile132Ile
M0011775 KGCFFEOI_00007 5436 3 Skin 0.03 protein_coding synonymous_variant LOW 258T>G Leu86Leu
M0011776 KGCFFEOI_00008 6319 3 Skin 0.03 protein_coding synonymous_variant LOW 102G>A Glu34Glu
M0011777 KGCFFEOI_00008 6325 3 Skin 0.03 protein_coding synonymous_variant LOW 108T>A Ala36Ala
M0011778 KGCFFEOI_00020 17107 3 Skin 0.03 protein_coding synonymous_variant LOW 27A>G Ser9Ser
M0011779 KGCFFEOI_00020 17111 3 Skin 0.03 protein_coding missense_variant MODERATE 31A>C Asn11His
M0011780 KGCFFEOI_00020 17134 3 Skin 0.03 protein_coding synonymous_variant LOW 54C>G Gly18Gly
M0011781 KGCFFEOI_00020 17156 3 Skin 0.03 protein_coding missense_variant MODERATE 76G>C Val26Leu
M0011782 KGCFFEOI_00020 17174 3 Skin 0.03 protein_coding missense_variant MODERATE 94A>G Ile32Val
M0011783 KGCFFEOI_00020 17194 3 Skin 0.03 protein_coding synonymous_variant LOW 114C>G Ala38Ala
M0011784 KGCFFEOI_00015 12196 3 Skin 0.03 protein_coding synonymous_variant LOW 1065G>A Ala355Ala
M0011785 KGCFFEOI_00015 12202 3 Skin 0.03 protein_coding synonymous_variant LOW 1059C>G Arg353Arg
M0011786 KGCFFEOI_00015 12219 3 Skin 0.03 protein_coding synonymous_variant LOW 1042T>C Leu348Leu
M0011787 KGCFFEOI_00015 12241 3 Skin 0.03 protein_coding synonymous_variant LOW 1020C>T Val340Val
M0011788 KGCFFEOI_00015 12250 3 Skin 0.03 protein_coding synonymous_variant LOW 1011G>T Val337Val
M0011789 KGCFFEOI_00015 12259 3 Skin 0.03 protein_coding synonymous_variant LOW 1002G>C Ser334Ser
M0011790 KGCFFEOI_00015 12262 3 Skin 0.03 protein_coding synonymous_variant LOW 999T>C Val333Val
M0011791 KGCFFEOI_00015 12271 3 Skin 0.03 protein_coding synonymous_variant LOW 990G>C Thr330Thr
M0011792 KGCFFEOI_00015 12301 3 Skin 0.03 protein_coding synonymous_variant LOW 960G>A Lys320Lys
M0011793 KGCFFEOI_00015 12310 3 Skin 0.03 protein_coding synonymous_variant LOW 951C>T Asp317Asp
M0011794 KGCFFEOI_00015 12316 3 Skin 0.03 protein_coding synonymous_variant LOW 945C>G Ser315Ser
M0011795 KGCFFEOI_00015 12319 3 Skin 0.03 protein_coding synonymous_variant LOW 942T>C Arg314Arg
M0011796 KGCFFEOI_00015 12325 3 Skin 0.03 protein_coding synonymous_variant LOW 936A>C Ala312Ala
M0011797 KGCFFEOI_00015 12520 3 Skin 0.03 protein_coding synonymous_variant LOW 741A>C Ala247Ala
M0011798 KGCFFEOI_00015 12529 3 Skin 0.03 protein_coding synonymous_variant LOW 732T>C Asp244Asp
M0011799 KGCFFEOI_00009 11779 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4529T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
KGCFFEOI_00013 Copper (Cu) 95.3 1.1e-51 23 129 0.8295 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term