Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1709
  Reference Plasmid   1111525849638565_bin.14__k141_47500
  Reference Plasmid Size   21331
  Reference Plasmid GC Content   0.53
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0011900 DIMJDMCN_00001 132 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -636G>T None
M0011901 DIMJDMCN_00001 161 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -607G>T None
M0011902 DIMJDMCN_00001 163 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -605G>T None
M0011903 DIMJDMCN_00001 164 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -604G>A None
M0011904 DIMJDMCN_00001 170 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -598G>A None
M0011905 DIMJDMCN_00001 177 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -591G>T None
M0011906 DIMJDMCN_00001 178 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -590G>A None
M0011907 DIMJDMCN_00001 179 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -589G>T None
M0011908 DIMJDMCN_00001 181 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -587G>T None
M0011909 DIMJDMCN_00001 193 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -575G>C None
M0011910 DIMJDMCN_00004 4358 6 Skin 0.24 protein_coding missense_variant MODERATE 71G>A Cys24Tyr
M0011911 DIMJDMCN_00004 4389 3 Skin 0.12 protein_coding synonymous_variant LOW 102C>T Gly34Gly
M0011912 DIMJDMCN_00006 5389 5 Skin 0.20 protein_coding missense_variant MODERATE 819G>A Met273Ile
M0011913 DIMJDMCN_00013 16521 4 Skin 0.16 protein_coding missense_variant MODERATE 1520A>G Asp507Gly
M0011914 DIMJDMCN_00016 19612 3 Skin 0.12 protein_coding synonymous_variant LOW 993A>C Gly331Gly
M0011915 DIMJDMCN_00015 18185 3 Skin 0.12 protein_coding synonymous_variant LOW 591T>C Ile197Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term