Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1710
  Reference Plasmid   1111525849638565_bin.22__k141_194452
  Reference Plasmid Size   3984
  Reference Plasmid GC Content   0.61
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0011916 OJPHOPII_00001 468 3 Skin 0.20 protein_coding downstream_gene_variant MODIFIER *223A>G None
M0011917 OJPHOPII_00001 838 3 Skin 0.20 protein_coding synonymous_variant LOW 672A>G Glu224Glu
M0011918 OJPHOPII_00001 2232 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -723G>A None
M0011919 OJPHOPII_00003 2570 6 Skin 0.40 protein_coding missense_variant MODERATE 488T>C Val163Ala
M0011920 OJPHOPII_00003 2796 3 Skin 0.20 protein_coding missense_variant MODERATE 262G>C Asp88His
M0011921 OJPHOPII_00001 3900 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2391C>T None
M0011922 OJPHOPII_00001 3950 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -2441G>T None
M0011923 OJPHOPII_00001 505 3 Skin 0.20 protein_coding downstream_gene_variant MODIFIER *186A>G None
M0011924 OJPHOPII_00001 724 3 Skin 0.20 protein_coding missense_variant MODERATE 786G>T Met262Ile
M0011925 OJPHOPII_00001 738 3 Skin 0.20 protein_coding missense_variant MODERATE 772G>A Ala258Thr
M0011926 OJPHOPII_00001 774 3 Skin 0.20 protein_coding missense_variant MODERATE 736A>G Met246Val
M0011927 OJPHOPII_00001 1106 3 Skin 0.20 protein_coding missense_variant MODERATE 404C>G Ala135Gly
M0011928 OJPHOPII_00001 1148 3 Skin 0.20 protein_coding missense_variant MODERATE 362G>A Gly121Asp
M0011929 OJPHOPII_00001 1350 3 Skin 0.20 protein_coding missense_variant MODERATE 160T>C Ser54Pro
M0011930 OJPHOPII_00001 1372 3 Skin 0.20 protein_coding synonymous_variant LOW 138G>A Gly46Gly
M0011931 OJPHOPII_00001 1421 3 Skin 0.20 protein_coding missense_variant MODERATE 89T>C Val30Ala
M0011932 OJPHOPII_00002 1670 3 Skin 0.20 protein_coding missense_variant MODERATE 478A>T Thr160Ser
M0011933 OJPHOPII_00002 1672 3 Skin 0.20 protein_coding missense_variant MODERATE 476T>C Val159Ala
M0011934 OJPHOPII_00002 1722 3 Skin 0.20 protein_coding synonymous_variant LOW 426T>C Gly142Gly
M0011935 OJPHOPII_00002 1743 3 Skin 0.20 protein_coding synonymous_variant LOW 405T>C Pro135Pro
M0011936 OJPHOPII_00002 2091 3 Skin 0.20 protein_coding synonymous_variant LOW 57T>C Leu19Leu
M0011937 OJPHOPII_00002 2097 3 Skin 0.20 protein_coding synonymous_variant LOW 51G>C Pro17Pro
M0011938 OJPHOPII_00001 2363 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -854G>A None
M0011939 OJPHOPII_00003 2403 3 Skin 0.20 protein_coding missense_variant MODERATE 655G>A Ala219Thr
M0011940 OJPHOPII_00003 2773 3 Skin 0.20 protein_coding synonymous_variant LOW 285G>A Val95Val
M0011941 OJPHOPII_00001 3089 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1580A>G None
M0011942 OJPHOPII_00001 3105 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1596T>C None
M0011943 OJPHOPII_00001 3126 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1617A>G None
M0011944 OJPHOPII_00001 3128 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1619G>A None
M0011945 OJPHOPII_00004 3220 3 Skin 0.20 protein_coding missense_variant MODERATE 118A>G Thr40Ala
M0011946 OJPHOPII_00004 3237 3 Skin 0.20 protein_coding missense_variant MODERATE 101T>C Ile34Thr
M0011947 OJPHOPII_00001 3561 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2052T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term