Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1711
  Reference Plasmid   1111525849638565_bin.22__k141_240028
  Reference Plasmid Size   16256
  Reference Plasmid GC Content   0.61
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0011948 LEMNHPCB_00002 1010 13 Skin 0.57 protein_coding missense_variant MODERATE 371G>T Gly124Val
M0011949 LEMNHPCB_00002 1209 5 Skin 0.22 protein_coding synonymous_variant LOW 570T>C Ala190Ala
M0011950 LEMNHPCB_00003 1614 15 Skin 0.65 protein_coding missense_variant MODERATE 101G>T Arg34Leu
M0011951 LEMNHPCB_00003 1628 15 Skin 0.65 protein_coding missense_variant MODERATE 115T>G Ser39Ala
M0011952 LEMNHPCB_00003 1720 14 Skin 0.61 protein_coding synonymous_variant LOW 207T>C Ile69Ile
M0011953 LEMNHPCB_00003 1798 5 Skin 0.22 protein_coding synonymous_variant LOW 285C>T Thr95Thr
M0011954 LEMNHPCB_00004 2667 4 Skin 0.17 protein_coding synonymous_variant LOW 255A>G Gln85Gln
M0011955 LEMNHPCB_00004 2748 5 Skin 0.22 protein_coding synonymous_variant LOW 336A>G Glu112Glu
M0011956 LEMNHPCB_00006 3638 14 Skin 0.61 protein_coding missense_variant MODERATE 61C>A Pro21Thr
M0011957 LEMNHPCB_00006 4179 14 Skin 0.61 protein_coding missense_variant MODERATE 602A>G Gln201Arg
M0011958 LEMNHPCB_00006 4207 5 Skin 0.22 protein_coding synonymous_variant LOW 630C>G Thr210Thr
M0011959 LEMNHPCB_00006 4833 14 Skin 0.61 protein_coding missense_variant MODERATE 1256A>G His419Arg
M0011960 LEMNHPCB_00007 6994 5 Skin 0.22 protein_coding synonymous_variant LOW 747T>C Ile249Ile
M0011961 LEMNHPCB_00007 7020 5 Skin 0.22 protein_coding missense_variant MODERATE 721G>C Val241Leu
M0011962 LEMNHPCB_00001 137 10 Skin 0.43 protein_coding missense_variant MODERATE 19C>A Pro7Thr
M0011963 LEMNHPCB_00001 279 10 Skin 0.43 protein_coding missense_variant MODERATE 161G>A Gly54Glu
M0011964 LEMNHPCB_00006 6147 3 Skin 0.13 protein_coding missense_variant MODERATE 2570G>T Arg857Ile
M0011965 LEMNHPCB_00007 6768 3 Skin 0.13 protein_coding missense_variant MODERATE 973A>G Ile325Val
M0011966 LEMNHPCB_00007 6884 3 Skin 0.13 protein_coding missense_variant MODERATE 857T>C Val286Ala
M0011967 LEMNHPCB_00007 7620 3 Skin 0.13 protein_coding synonymous_variant LOW 121C>T Leu41Leu
M0011968 LEMNHPCB_00008 8126 3 Skin 0.13 protein_coding synonymous_variant LOW 33T>C Ala11Ala
M0011969 LEMNHPCB_00008 8396 3 Skin 0.13 protein_coding synonymous_variant LOW 303G>T Thr101Thr
M0011970 LEMNHPCB_00008 8442 3 Skin 0.13 protein_coding synonymous_variant LOW 349C>T Leu117Leu
M0011971 LEMNHPCB_00008 8675 3 Skin 0.13 protein_coding synonymous_variant LOW 582T>C Phe194Phe
M0011972 LEMNHPCB_00008 8813 3 Skin 0.13 protein_coding synonymous_variant LOW 720T>C Ala240Ala
M0011973 LEMNHPCB_00008 8921 3 Skin 0.13 protein_coding synonymous_variant LOW 828T>C Ala276Ala
M0011974 LEMNHPCB_00008 8990 3 Skin 0.13 protein_coding synonymous_variant LOW 897T>C Ala299Ala
M0011975 LEMNHPCB_00008 9242 3 Skin 0.13 protein_coding synonymous_variant LOW 1149T>C Val383Val
M0011976 LEMNHPCB_00008 9323 3 Skin 0.13 protein_coding synonymous_variant LOW 1230C>T His410His
M0011977 LEMNHPCB_00008 9358 3 Skin 0.13 protein_coding missense_variant MODERATE 1265G>A Gly422Asp
M0011978 LEMNHPCB_00008 9401 3 Skin 0.13 protein_coding missense_variant MODERATE 1308C>G Asp436Glu
M0011979 LEMNHPCB_00008 9465 3 Skin 0.13 protein_coding missense_variant MODERATE 1372A>G Ile458Val
M0011980 LEMNHPCB_00008 9680 3 Skin 0.13 protein_coding synonymous_variant LOW 1587C>T Ile529Ile
M0011981 LEMNHPCB_00008 9689 3 Skin 0.13 protein_coding synonymous_variant LOW 1596T>C Ile532Ile
M0011982 LEMNHPCB_00008 9716 3 Skin 0.13 protein_coding synonymous_variant LOW 1623T>C Gly541Gly
M0011983 LEMNHPCB_00008 9741 3 Skin 0.13 protein_coding synonymous_variant LOW 1648A>C Arg550Arg
M0011984 LEMNHPCB_00008 9760 3 Skin 0.13 protein_coding missense_variant MODERATE 1667A>G Asn556Ser
M0011985 LEMNHPCB_00007 9793 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2053C>T None
M0011986 LEMNHPCB_00007 9805 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2065G>A None
M0011987 LEMNHPCB_00007 9841 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2101C>A None
M0011988 LEMNHPCB_00009 10091 3 Skin 0.13 protein_coding synonymous_variant LOW 177T>C His59His
M0011989 LEMNHPCB_00009 10185 3 Skin 0.13 protein_coding synonymous_variant LOW 271T>C Leu91Leu
M0011990 LEMNHPCB_00009 10207 3 Skin 0.13 protein_coding missense_variant MODERATE 293G>A Arg98Gln
M0011991 LEMNHPCB_00009 10248 3 Skin 0.13 protein_coding synonymous_variant LOW 334T>C Leu112Leu
M0011992 LEMNHPCB_00010 10358 3 Skin 0.13 protein_coding synonymous_variant LOW 444A>G Thr148Thr
M0011993 LEMNHPCB_00010 10363 3 Skin 0.13 protein_coding missense_variant MODERATE 439G>A Val147Met
M0011994 LEMNHPCB_00010 10424 3 Skin 0.13 protein_coding synonymous_variant LOW 378C>T Arg126Arg
M0011995 LEMNHPCB_00011 10820 3 Skin 0.13 protein_coding synonymous_variant LOW 672A>G Ser224Ser
M0011996 LEMNHPCB_00011 10963 3 Skin 0.13 protein_coding missense_variant MODERATE 529A>G Ile177Val
M0011997 LEMNHPCB_00011 11296 3 Skin 0.13 protein_coding missense_variant MODERATE 196A>T Thr66Ser
M0011998 LEMNHPCB_00011 11360 3 Skin 0.13 protein_coding synonymous_variant LOW 132G>A Leu44Leu
M0011999 LEMNHPCB_00011 11409 3 Skin 0.13 protein_coding missense_variant MODERATE 83T>C Ile28Thr
M0012000 LEMNHPCB_00011 11464 3 Skin 0.13 protein_coding missense_variant MODERATE 28C>T Arg10Cys
M0012001 LEMNHPCB_00007 11584 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3844T>C None
M0012002 LEMNHPCB_00007 11631 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3891G>C None
M0012003 LEMNHPCB_00012 11952 3 Skin 0.13 protein_coding synonymous_variant LOW 2200A>C Arg734Arg
M0012004 LEMNHPCB_00012 11959 3 Skin 0.13 protein_coding synonymous_variant LOW 2193C>T Gly731Gly
M0012005 LEMNHPCB_00012 12010 3 Skin 0.13 protein_coding synonymous_variant LOW 2142T>C Ser714Ser
M0012006 LEMNHPCB_00012 12063 3 Skin 0.13 protein_coding synonymous_variant LOW 2089T>C Leu697Leu
M0012007 LEMNHPCB_00012 12104 3 Skin 0.13 protein_coding missense_variant MODERATE 2048G>T Gly683Val
M0012008 LEMNHPCB_00012 12305 3 Skin 0.13 protein_coding missense_variant MODERATE 1847T>G Val616Gly
M0012009 LEMNHPCB_00012 12403 3 Skin 0.13 protein_coding missense_variant MODERATE 1749G>A Met583Ile
M0012010 LEMNHPCB_00012 12559 3 Skin 0.13 protein_coding synonymous_variant LOW 1593A>G Lys531Lys
M0012011 LEMNHPCB_00012 12607 3 Skin 0.13 protein_coding synonymous_variant LOW 1545G>T Pro515Pro
M0012012 LEMNHPCB_00012 12718 3 Skin 0.13 protein_coding missense_variant MODERATE 1434T>G Phe478Leu
M0012013 LEMNHPCB_00012 12972 3 Skin 0.13 protein_coding synonymous_variant LOW 1180T>C Leu394Leu
M0012014 LEMNHPCB_00012 12976 3 Skin 0.13 protein_coding synonymous_variant LOW 1176C>T Cys392Cys
M0012015 LEMNHPCB_00012 13003 3 Skin 0.13 protein_coding synonymous_variant LOW 1149C>T Arg383Arg
M0012016 LEMNHPCB_00012 13181 3 Skin 0.13 protein_coding missense_variant MODERATE 971T>C Val324Ala
M0012017 LEMNHPCB_00012 13200 3 Skin 0.13 protein_coding synonymous_variant LOW 952C>T Leu318Leu
M0012018 LEMNHPCB_00012 13237 3 Skin 0.13 protein_coding synonymous_variant LOW 915T>C Gly305Gly
M0012019 LEMNHPCB_00012 13486 3 Skin 0.13 protein_coding synonymous_variant LOW 666C>T Gly222Gly
M0012020 LEMNHPCB_00012 13534 3 Skin 0.13 protein_coding synonymous_variant LOW 618G>A Leu206Leu
M0012021 LEMNHPCB_00012 13600 3 Skin 0.13 protein_coding synonymous_variant LOW 552T>C Thr184Thr
M0012022 LEMNHPCB_00012 13625 3 Skin 0.13 protein_coding missense_variant MODERATE 527T>A Leu176Gln
M0012023 LEMNHPCB_00012 13744 3 Skin 0.13 protein_coding synonymous_variant LOW 408C>T Ala136Ala
M0012024 LEMNHPCB_00012 13747 3 Skin 0.13 protein_coding missense_variant MODERATE 405C>G Asp135Glu
M0012025 LEMNHPCB_00012 13830 3 Skin 0.13 protein_coding missense_variant MODERATE 322G>A Val108Ile
M0012026 LEMNHPCB_00012 13856 3 Skin 0.13 protein_coding missense_variant MODERATE 296G>A Gly99Asp
M0012027 LEMNHPCB_00012 13867 3 Skin 0.13 protein_coding synonymous_variant LOW 285C>T Ala95Ala
M0012028 LEMNHPCB_00012 13918 3 Skin 0.13 protein_coding synonymous_variant LOW 234C>T Thr78Thr
M0012029 LEMNHPCB_00012 13927 3 Skin 0.13 protein_coding synonymous_variant LOW 225T>C Ile75Ile
M0012030 LEMNHPCB_00012 14080 3 Skin 0.13 protein_coding synonymous_variant LOW 72C>T Ala24Ala
M0012031 LEMNHPCB_00013 14382 3 Skin 0.13 protein_coding synonymous_variant LOW 660C>T Phe220Phe
M0012032 LEMNHPCB_00013 14431 3 Skin 0.13 protein_coding missense_variant MODERATE 611C>A Pro204Gln
M0012033 LEMNHPCB_00013 14546 3 Skin 0.13 protein_coding synonymous_variant LOW 496C>T Leu166Leu
M0012034 LEMNHPCB_00013 14914 3 Skin 0.13 protein_coding missense_variant MODERATE 128A>G His43Arg
M0012035 LEMNHPCB_00010 15063 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4262A>G None
M0012036 LEMNHPCB_00014 15509 3 Skin 0.13 protein_coding synonymous_variant LOW 285C>T Ala95Ala
M0012037 LEMNHPCB_00014 15560 3 Skin 0.13 protein_coding synonymous_variant LOW 234T>C Asp78Asp
M0012038 LEMNHPCB_00014 15596 3 Skin 0.13 protein_coding synonymous_variant LOW 198T>C Val66Val
M0012039 LEMNHPCB_00014 15680 3 Skin 0.13 protein_coding synonymous_variant LOW 114T>C Asn38Asn
M0012040 LEMNHPCB_00015 15828 3 Skin 0.13 protein_coding stop_lost&splice_region_variant HIGH 260A>C Ter87Serext*?
M0012041 LEMNHPCB_00015 15830 3 Skin 0.13 protein_coding synonymous_variant LOW 258G>A Arg86Arg
M0012042 LEMNHPCB_00015 15932 3 Skin 0.13 protein_coding synonymous_variant LOW 156T>C Phe52Phe
M0012043 LEMNHPCB_00015 15934 3 Skin 0.13 protein_coding missense_variant MODERATE 154T>C Phe52Leu
M0012044 LEMNHPCB_00015 16051 3 Skin 0.13 protein_coding missense_variant MODERATE 37T>C Phe13Leu
M0012045 LEMNHPCB_00001 326 5 Skin 0.22 protein_coding missense_variant MODERATE 208T>G Ser70Ala
M0012046 LEMNHPCB_00001 481 5 Skin 0.22 protein_coding synonymous_variant LOW 363T>C Arg121Arg
M0012047 LEMNHPCB_00001 616 8 Skin 0.35 protein_coding synonymous_variant LOW 498T>C Ser166Ser
M0012048 LEMNHPCB_00001 627 5 Skin 0.22 protein_coding missense_variant MODERATE 509C>T Pro170Leu
M0012049 LEMNHPCB_00002 812 5 Skin 0.22 protein_coding missense_variant MODERATE 173G>A Arg58His
M0012050 LEMNHPCB_00002 1114 5 Skin 0.22 protein_coding missense_variant MODERATE 475G>A Ala159Thr
M0012051 LEMNHPCB_00002 1226 4 Skin 0.17 protein_coding missense_variant MODERATE 587C>A Ala196Asp
M0012052 LEMNHPCB_00002 1365 4 Skin 0.17 protein_coding missense_variant MODERATE 726C>G Asp242Glu
M0012053 LEMNHPCB_00002 1461 5 Skin 0.22 protein_coding synonymous_variant LOW 822T>C Ser274Ser
M0012054 LEMNHPCB_00003 1585 5 Skin 0.22 protein_coding synonymous_variant LOW 72T>C Ile24Ile
M0012055 LEMNHPCB_00003 1597 5 Skin 0.22 protein_coding synonymous_variant LOW 84T>C Arg28Arg
M0012056 LEMNHPCB_00003 1616 5 Skin 0.22 protein_coding missense_variant MODERATE 103T>C Ser35Pro
M0012057 LEMNHPCB_00003 1638 5 Skin 0.22 protein_coding missense_variant MODERATE 125C>T Ser42Phe
M0012058 LEMNHPCB_00003 1639 5 Skin 0.22 protein_coding synonymous_variant LOW 126C>T Ser42Ser
M0012059 LEMNHPCB_00003 1843 3 Skin 0.13 protein_coding synonymous_variant LOW 330A>G Leu110Leu
M0012060 LEMNHPCB_00003 1867 3 Skin 0.13 protein_coding synonymous_variant LOW 354T>C Cys118Cys
M0012061 LEMNHPCB_00003 1887 3 Skin 0.13 protein_coding missense_variant MODERATE 374C>T Thr125Ile
M0012062 LEMNHPCB_00003 2296 4 Skin 0.17 protein_coding synonymous_variant LOW 783G>A Glu261Glu
M0012063 LEMNHPCB_00003 2406 5 Skin 0.22 protein_coding missense_variant MODERATE 893T>G Val298Gly
M0012064 LEMNHPCB_00004 2476 5 Skin 0.22 protein_coding missense_variant MODERATE 64A>G Thr22Ala
M0012065 LEMNHPCB_00003 1835 3 Skin 0.13 protein_coding missense_variant MODERATE 322C>T Pro108Ser
M0012066 LEMNHPCB_00005 3449 3 Skin 0.13 protein_coding synonymous_variant LOW 378T>C Thr126Thr
M0012067 LEMNHPCB_00006 4216 3 Skin 0.13 protein_coding synonymous_variant LOW 639C>T Ala213Ala
M0012068 LEMNHPCB_00004 2874 4 Skin 0.17 protein_coding synonymous_variant LOW 462A>G Gln154Gln
M0012069 LEMNHPCB_00005 3141 3 Skin 0.13 protein_coding missense_variant MODERATE 70C>T Arg24Cys
M0012070 LEMNHPCB_00005 3146 3 Skin 0.13 protein_coding synonymous_variant LOW 75T>C Asn25Asn
M0012071 LEMNHPCB_00005 3171 3 Skin 0.13 protein_coding missense_variant MODERATE 100C>T Arg34Cys
M0012072 LEMNHPCB_00005 3175 3 Skin 0.13 protein_coding missense_variant MODERATE 104A>G Tyr35Cys
M0012073 LEMNHPCB_00005 3179 3 Skin 0.13 protein_coding synonymous_variant LOW 108C>A Arg36Arg
M0012074 LEMNHPCB_00005 3216 3 Skin 0.13 protein_coding missense_variant MODERATE 145A>G Thr49Ala
M0012075 LEMNHPCB_00005 3300 4 Skin 0.17 protein_coding missense_variant MODERATE 229G>C Ala77Pro
M0012076 LEMNHPCB_00005 3307 4 Skin 0.17 protein_coding missense_variant MODERATE 236G>A Arg79Gln
M0012077 LEMNHPCB_00005 3379 4 Skin 0.17 protein_coding missense_variant MODERATE 308C>T Ala103Val
M0012078 LEMNHPCB_00005 3522 4 Skin 0.17 protein_coding missense_variant MODERATE 451T>C Phe151Leu
M0012079 LEMNHPCB_00005 3560 4 Skin 0.17 protein_coding synonymous_variant LOW 489C>T Ser163Ser
M0012080 LEMNHPCB_00006 3617 4 Skin 0.17 protein_coding synonymous_variant LOW 40T>C Leu14Leu
M0012081 LEMNHPCB_00006 3751 4 Skin 0.17 protein_coding synonymous_variant LOW 174C>T Thr58Thr
M0012082 LEMNHPCB_00006 3757 4 Skin 0.17 protein_coding synonymous_variant LOW 180C>G Val60Val
M0012083 LEMNHPCB_00006 3778 4 Skin 0.17 protein_coding synonymous_variant LOW 201C>T Ala67Ala
M0012084 LEMNHPCB_00006 3850 4 Skin 0.17 protein_coding synonymous_variant LOW 273G>A Lys91Lys
M0012085 LEMNHPCB_00006 3857 4 Skin 0.17 protein_coding missense_variant MODERATE 280T>G Cys94Gly
M0012086 LEMNHPCB_00006 3859 4 Skin 0.17 protein_coding synonymous_variant LOW 282C>T Cys94Cys
M0012087 LEMNHPCB_00006 3860 4 Skin 0.17 protein_coding synonymous_variant LOW 283C>T Leu95Leu
M0012088 LEMNHPCB_00006 4192 4 Skin 0.17 protein_coding synonymous_variant LOW 615A>G Pro205Pro
M0012089 LEMNHPCB_00006 4241 4 Skin 0.17 protein_coding missense_variant MODERATE 664A>G Ile222Val
M0012090 LEMNHPCB_00006 4403 4 Skin 0.17 protein_coding missense_variant MODERATE 826G>A Ala276Thr
M0012091 LEMNHPCB_00006 4605 4 Skin 0.17 protein_coding missense_variant MODERATE 1028A>G Glu343Gly
M0012092 LEMNHPCB_00006 4618 4 Skin 0.17 protein_coding missense_variant MODERATE 1041C>A Asp347Glu
M0012093 LEMNHPCB_00006 4760 4 Skin 0.17 protein_coding missense_variant MODERATE 1183T>C Cys395Arg
M0012094 LEMNHPCB_00006 4821 4 Skin 0.17 protein_coding missense_variant MODERATE 1244G>A Arg415Gln
M0012095 LEMNHPCB_00006 4836 4 Skin 0.17 protein_coding missense_variant MODERATE 1259T>C Val420Ala
M0012096 LEMNHPCB_00006 4873 4 Skin 0.17 protein_coding synonymous_variant LOW 1296T>C Ala432Ala
M0012097 LEMNHPCB_00006 4893 4 Skin 0.17 protein_coding missense_variant MODERATE 1316C>G Ala439Gly
M0012098 LEMNHPCB_00006 4921 4 Skin 0.17 protein_coding synonymous_variant LOW 1344C>T Thr448Thr
M0012099 LEMNHPCB_00006 4938 4 Skin 0.17 protein_coding missense_variant MODERATE 1361A>G Tyr454Cys
M0012100 LEMNHPCB_00006 5067 4 Skin 0.17 protein_coding missense_variant MODERATE 1490G>A Ser497Asn
M0012101 LEMNHPCB_00006 5086 4 Skin 0.17 protein_coding synonymous_variant LOW 1509C>T Val503Val
M0012102 LEMNHPCB_00006 5186 4 Skin 0.17 protein_coding missense_variant MODERATE 1609A>G Asn537Asp
M0012103 LEMNHPCB_00006 5465 4 Skin 0.17 protein_coding synonymous_variant LOW 1888C>A Arg630Arg
M0012104 LEMNHPCB_00006 5530 4 Skin 0.17 protein_coding synonymous_variant LOW 1953G>A Pro651Pro
M0012105 LEMNHPCB_00006 5653 4 Skin 0.17 protein_coding synonymous_variant LOW 2076G>A Pro692Pro
M0012106 LEMNHPCB_00006 5777 4 Skin 0.17 protein_coding missense_variant MODERATE 2200G>A Val734Ile
M0012107 LEMNHPCB_00006 5797 4 Skin 0.17 protein_coding synonymous_variant LOW 2220C>G Arg740Arg
M0012108 LEMNHPCB_00006 5954 4 Skin 0.17 protein_coding missense_variant MODERATE 2377C>A Pro793Thr
M0012109 LEMNHPCB_00003 2218 3 Skin 0.13 protein_coding synonymous_variant LOW 705C>G Leu235Leu
M0012110 LEMNHPCB_00003 2239 3 Skin 0.13 protein_coding synonymous_variant LOW 726T>C Leu242Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
LEMNHPCB_00006 BBJ76899.1|CBM50 89.9 0 1 924 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term