Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1712
  Reference Plasmid   1111525849638686_bin.22__k141_134196
  Reference Plasmid Size   7990
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0012111 DLAGMCBD_00003 1494 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -16C>T None
M0012112 DLAGMCBD_00003 1508 5 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -30T>C None
M0012113 DLAGMCBD_00010 4834 19 Skin 0.49 protein_coding synonymous_variant LOW 132C>G Gly44Gly
M0012114 DLAGMCBD_00010 4987 19 Skin 0.49 protein_coding synonymous_variant LOW 285C>A Pro95Pro
M0012115 DLAGMCBD_00011 5396 4 Skin 0.10 protein_coding missense_variant MODERATE 209T>A Phe70Tyr
M0012116 DLAGMCBD_00005 2952 3 Skin 0.08 protein_coding synonymous_variant LOW 831T>C Ala277Ala
M0012117 DLAGMCBD_00005 2977 3 Skin 0.08 protein_coding synonymous_variant LOW 856C>T Leu286Leu
M0012118 DLAGMCBD_00005 2986 3 Skin 0.08 protein_coding missense_variant MODERATE 865C>A Arg289Ser
M0012119 DLAGMCBD_00008 4018 4 Skin 0.10 protein_coding missense_variant MODERATE 151A>G Thr51Ala
M0012120 DLAGMCBD_00008 4287 4 Skin 0.10 protein_coding synonymous_variant LOW 420G>A Lys140Lys
M0012121 DLAGMCBD_00002 917 3 Skin 0.08 protein_coding missense_variant MODERATE 380C>A Thr127Asn
M0012122 DLAGMCBD_00013 7657 4 Skin 0.10 protein_coding synonymous_variant LOW 147T>C Gly49Gly
M0012123 DLAGMCBD_00005 2208 7 Skin 0.18 protein_coding synonymous_variant LOW 87A>G Leu29Leu
M0012124 DLAGMCBD_00005 2258 10 Skin 0.26 protein_coding missense_variant MODERATE 137T>C Leu46Pro
M0012125 DLAGMCBD_00013 7728 3 Skin 0.08 protein_coding missense_variant MODERATE 76A>G Ile26Val
M0012126 DLAGMCBD_00002 675 3 Skin 0.08 protein_coding synonymous_variant LOW 138G>C Gly46Gly
M0012127 DLAGMCBD_00004 1974 3 Skin 0.08 protein_coding synonymous_variant LOW 222G>A Gln74Gln
M0012128 DLAGMCBD_00004 1980 3 Skin 0.08 protein_coding synonymous_variant LOW 228G>T Arg76Arg
M0012129 DLAGMCBD_00003 1213 4 Skin 0.10 protein_coding missense_variant MODERATE 266G>C Ser89Thr
M0012130 DLAGMCBD_00004 1830 3 Skin 0.08 protein_coding missense_variant MODERATE 78C>A Ser26Arg
M0012131 DLAGMCBD_00004 1851 3 Skin 0.08 protein_coding synonymous_variant LOW 99C>T Tyr33Tyr
M0012132 DLAGMCBD_00005 2181 5 Skin 0.13 protein_coding synonymous_variant LOW 60G>C Pro20Pro
M0012133 DLAGMCBD_00003 1257 3 Skin 0.08 protein_coding synonymous_variant LOW 222G>C Ala74Ala
M0012134 DLAGMCBD_00003 1272 3 Skin 0.08 protein_coding synonymous_variant LOW 207T>C Arg69Arg
M0012135 DLAGMCBD_00003 1275 3 Skin 0.08 protein_coding missense_variant MODERATE 204C>G His68Gln
M0012136 DLAGMCBD_00003 1280 3 Skin 0.08 protein_coding missense_variant MODERATE 199G>C Asp67His
M0012137 DLAGMCBD_00003 1281 3 Skin 0.08 protein_coding synonymous_variant LOW 198G>A Pro66Pro
M0012138 DLAGMCBD_00003 1302 3 Skin 0.08 protein_coding synonymous_variant LOW 177C>T Leu59Leu
M0012139 DLAGMCBD_00003 1322 3 Skin 0.08 protein_coding missense_variant MODERATE 157G>A Val53Ile
M0012140 DLAGMCBD_00003 1346 4 Skin 0.10 protein_coding missense_variant MODERATE 133A>G Ile45Val
M0012141 DLAGMCBD_00003 1350 4 Skin 0.10 protein_coding synonymous_variant LOW 129G>A Gly43Gly
M0012142 DLAGMCBD_00005 2705 4 Skin 0.10 protein_coding missense_variant MODERATE 584G>A Arg195Lys
M0012143 DLAGMCBD_00005 2736 4 Skin 0.10 protein_coding synonymous_variant LOW 615C>A Ala205Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term