Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1730
  Reference Plasmid   1111525849640249_bin.44__k141_1032873
  Reference Plasmid Size   4026
  Reference Plasmid GC Content   0.71
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0013088 NOJNGLDL_00003 165 4 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -2964G>C None
M0013089 NOJNGLDL_00001 691 6 Skin 0.86 protein_coding synonymous_variant LOW 738T>G Ser246Ser
M0013090 NOJNGLDL_00001 1111 3 Skin 0.43 protein_coding synonymous_variant LOW 318G>C Gly106Gly
M0013091 NOJNGLDL_00001 1236 6 Skin 0.86 protein_coding missense_variant MODERATE 193C>G Leu65Val
M0013092 NOJNGLDL_00002 1657 5 Skin 0.71 protein_coding synonymous_variant LOW 1134C>T Gly378Gly
M0013093 NOJNGLDL_00002 1717 5 Skin 0.71 protein_coding synonymous_variant LOW 1074T>C Asp358Asp
M0013094 NOJNGLDL_00003 121 4 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -3008G>A None
M0013095 NOJNGLDL_00002 2104 3 Skin 0.43 protein_coding synonymous_variant LOW 687A>G Ala229Ala
M0013096 NOJNGLDL_00002 2128 3 Skin 0.43 protein_coding synonymous_variant LOW 663G>C Val221Val
M0013097 NOJNGLDL_00002 2140 3 Skin 0.43 protein_coding synonymous_variant LOW 651C>A Pro217Pro
M0013098 NOJNGLDL_00002 2197 6 Skin 0.86 protein_coding synonymous_variant LOW 594A>G Pro198Pro
M0013099 NOJNGLDL_00002 2201 6 Skin 0.86 protein_coding missense_variant MODERATE 590A>G Asn197Ser
M0013100 NOJNGLDL_00002 2398 5 Skin 0.71 protein_coding synonymous_variant LOW 393C>G Arg131Arg
M0013101 NOJNGLDL_00003 3288 3 Skin 0.43 protein_coding missense_variant MODERATE 160A>G Asn54Asp
M0013102 NOJNGLDL_00001 1276 3 Skin 0.43 protein_coding synonymous_variant LOW 153G>A Glu51Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term