Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1734
  Reference Plasmid   1111525849640249_bin.95__k141_2292864
  Reference Plasmid Size   469593
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0013160 EJFDDGOK_00318 342225 4 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4820G>T None
M0013161 EJFDDGOK_00228 237092 3 Skin 0.06 protein_coding synonymous_variant LOW 2268G>C Leu756Leu
M0013162 EJFDDGOK_00228 237122 3 Skin 0.06 protein_coding synonymous_variant LOW 2298T>C Ala766Ala
M0013163 EJFDDGOK_00228 237155 3 Skin 0.06 protein_coding synonymous_variant LOW 2331A>G Glu777Glu
M0013164 EJFDDGOK_00228 237164 3 Skin 0.06 protein_coding synonymous_variant LOW 2340A>C Ala780Ala
M0013165 EJFDDGOK_00228 237189 3 Skin 0.06 protein_coding missense_variant MODERATE 2365T>G Ser789Ala
M0013166 EJFDDGOK_00229 237361 3 Skin 0.06 protein_coding synonymous_variant LOW 84G>A Pro28Pro
M0013167 EJFDDGOK_00229 237508 3 Skin 0.06 protein_coding synonymous_variant LOW 231C>T Asn77Asn
M0013168 EJFDDGOK_00229 237511 3 Skin 0.06 protein_coding synonymous_variant LOW 234G>T Leu78Leu
M0013169 EJFDDGOK_00229 237589 3 Skin 0.06 protein_coding synonymous_variant LOW 312A>G Gln104Gln
M0013170 EJFDDGOK_00229 237598 3 Skin 0.06 protein_coding synonymous_variant LOW 321G>C Ala107Ala
M0013171 EJFDDGOK_00229 237611 3 Skin 0.06 protein_coding missense_variant MODERATE 334A>G Asn112Asp
M0013172 EJFDDGOK_00229 237667 3 Skin 0.06 protein_coding synonymous_variant LOW 390A>G Gln130Gln
M0013173 EJFDDGOK_00107 113753 3 Skin 0.06 protein_coding synonymous_variant LOW 126C>G Ser42Ser
M0013174 EJFDDGOK_00319 338549 4 Skin 0.08 protein_coding missense_variant MODERATE 71C>T Pro24Leu
M0013175 EJFDDGOK_00367 386058 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -48T>G None
M0013176 EJFDDGOK_00058 63943 3 Skin 0.06 protein_coding missense_variant MODERATE 194A>T Glu65Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
EJFDDGOK_00041 QDX26446.1|PL1_2 81.4 1.52e-259 22 450 0.9429 0.9387
EJFDDGOK_00212 AVA16055.1|GH23 95.7 6.46e-141 48 257 0.8171 1
EJFDDGOK_00350 QOV94503.1|GT35 71.2 2.5e-139 1 265 0.9636 0.978





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term