Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1746
  Reference Plasmid   1111525849641655_bin.2__k141_50937
  Reference Plasmid Size   7484
  Reference Plasmid GC Content   0.33
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0013386 OMNNJMNE_00003 2610 6 Skin 0.86 protein_coding missense_variant MODERATE 309G>C Leu103Phe
M0013387 OMNNJMNE_00003 2916 3 Skin 0.43 protein_coding start_lost HIGH 3G>A Met1?
M0013388 OMNNJMNE_00003 2918 3 Skin 0.43 protein_coding initiator_codon_variant LOW 1A>T Met1?
M0013389 OMNNJMNE_00002 2928 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -395T>C None
M0013390 OMNNJMNE_00002 2970 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -437A>G None
M0013391 OMNNJMNE_00002 3007 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -474G>A None
M0013392 OMNNJMNE_00002 3053 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -520T>C None
M0013393 OMNNJMNE_00002 3103 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -570G>A None
M0013394 OMNNJMNE_00002 3110 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -577A>G None
M0013395 OMNNJMNE_00002 3161 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -628G>A None
M0013396 OMNNJMNE_00004 3216 4 Skin 0.57 protein_coding missense_variant MODERATE 1915A>G Asn639Asp
M0013397 OMNNJMNE_00004 3319 4 Skin 0.57 protein_coding synonymous_variant LOW 1812A>G Lys604Lys
M0013398 OMNNJMNE_00004 3391 3 Skin 0.43 protein_coding synonymous_variant LOW 1740A>T Ala580Ala
M0013399 OMNNJMNE_00004 3397 3 Skin 0.43 protein_coding synonymous_variant LOW 1734C>T Gly578Gly
M0013400 OMNNJMNE_00004 3400 3 Skin 0.43 protein_coding synonymous_variant LOW 1731T>G Thr577Thr
M0013401 OMNNJMNE_00004 3427 3 Skin 0.43 protein_coding synonymous_variant LOW 1704T>C Gly568Gly
M0013402 OMNNJMNE_00004 3430 3 Skin 0.43 protein_coding synonymous_variant LOW 1701T>C Gly567Gly
M0013403 OMNNJMNE_00004 3439 3 Skin 0.43 protein_coding synonymous_variant LOW 1692C>T Val564Val
M0013404 OMNNJMNE_00004 3442 3 Skin 0.43 protein_coding synonymous_variant LOW 1689T>C Leu563Leu
M0013405 OMNNJMNE_00004 3496 3 Skin 0.43 protein_coding synonymous_variant LOW 1635T>A Thr545Thr
M0013406 OMNNJMNE_00004 3534 3 Skin 0.43 protein_coding synonymous_variant LOW 1597T>C Leu533Leu
M0013407 OMNNJMNE_00004 3553 3 Skin 0.43 protein_coding synonymous_variant LOW 1578G>A Lys526Lys
M0013408 OMNNJMNE_00004 3624 4 Skin 0.57 protein_coding missense_variant MODERATE 1507A>G Asn503Asp
M0013409 OMNNJMNE_00004 3625 3 Skin 0.43 protein_coding synonymous_variant LOW 1506A>G Glu502Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term