Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1751
  Reference Plasmid   1111525849644360_bin.33__k141_234839
  Reference Plasmid Size   12688
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0013444 PBIMGNHK_00002 1705 4 Skin 0.16 protein_coding missense_variant MODERATE 3878C>T Thr1293Met
M0013445 PBIMGNHK_00002 1770 4 Skin 0.16 protein_coding synonymous_variant LOW 3813T>C Gly1271Gly
M0013446 PBIMGNHK_00002 2373 11 Skin 0.44 protein_coding synonymous_variant LOW 3210T>C Gly1070Gly
M0013447 PBIMGNHK_00002 2430 11 Skin 0.44 protein_coding synonymous_variant LOW 3153T>C Ala1051Ala
M0013448 PBIMGNHK_00002 2820 4 Skin 0.16 protein_coding synonymous_variant LOW 2763G>A Val921Val
M0013449 PBIMGNHK_00002 2850 4 Skin 0.16 protein_coding synonymous_variant LOW 2733G>A Val911Val
M0013450 PBIMGNHK_00002 3063 4 Skin 0.16 protein_coding synonymous_variant LOW 2520T>G Gly840Gly
M0013451 PBIMGNHK_00002 3066 4 Skin 0.16 protein_coding synonymous_variant LOW 2517G>T Leu839Leu
M0013452 PBIMGNHK_00002 3279 15 Skin 0.60 protein_coding synonymous_variant LOW 2304A>G Ala768Ala
M0013453 PBIMGNHK_00002 3366 11 Skin 0.44 protein_coding synonymous_variant LOW 2217C>T Asn739Asn
M0013454 PBIMGNHK_00002 3411 15 Skin 0.60 protein_coding synonymous_variant LOW 2172T>C Ile724Ile
M0013455 PBIMGNHK_00002 3450 10 Skin 0.40 protein_coding synonymous_variant LOW 2133G>A Ala711Ala
M0013456 PBIMGNHK_00002 3544 16 Skin 0.64 protein_coding missense_variant MODERATE 2039G>A Gly680Glu
M0013457 PBIMGNHK_00002 3546 16 Skin 0.64 protein_coding synonymous_variant LOW 2037A>G Lys679Lys
M0013458 PBIMGNHK_00002 3560 14 Skin 0.56 protein_coding missense_variant MODERATE 2023A>C Asn675His
M0013459 PBIMGNHK_00002 4239 6 Skin 0.24 protein_coding synonymous_variant LOW 1344C>T Arg448Arg
M0013460 PBIMGNHK_00002 4305 16 Skin 0.64 protein_coding synonymous_variant LOW 1278C>G Ala426Ala
M0013461 PBIMGNHK_00002 5076 12 Skin 0.48 protein_coding synonymous_variant LOW 507T>G Ala169Ala
M0013462 PBIMGNHK_00002 5197 13 Skin 0.52 protein_coding missense_variant MODERATE 386G>T Gly129Val
M0013463 PBIMGNHK_00002 5228 8 Skin 0.32 protein_coding missense_variant MODERATE 355G>A Ala119Thr
M0013464 PBIMGNHK_00002 5490 6 Skin 0.24 protein_coding synonymous_variant LOW 93C>T Ala31Ala
M0013465 PBIMGNHK_00002 5496 11 Skin 0.44 protein_coding synonymous_variant LOW 87A>C Ala29Ala
M0013466 PBIMGNHK_00002 5909 11 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -327T>C None
M0013467 PBIMGNHK_00004 6537 12 Skin 0.48 protein_coding missense_variant MODERATE 299G>A Arg100Gln
M0013468 PBIMGNHK_00005 7023 9 Skin 0.36 protein_coding synonymous_variant LOW 261C>G Arg87Arg
M0013469 PBIMGNHK_00005 7059 3 Skin 0.12 protein_coding synonymous_variant LOW 225G>A Lys75Lys
M0013470 PBIMGNHK_00005 7137 11 Skin 0.44 protein_coding synonymous_variant LOW 147G>A Ala49Ala
M0013471 PBIMGNHK_00005 7150 3 Skin 0.12 protein_coding missense_variant MODERATE 134G>A Gly45Asp
M0013472 PBIMGNHK_00005 7179 9 Skin 0.36 protein_coding synonymous_variant LOW 105C>T Asp35Asp
M0013473 PBIMGNHK_00005 7182 9 Skin 0.36 protein_coding synonymous_variant LOW 102G>T Ala34Ala
M0013474 PBIMGNHK_00005 7192 9 Skin 0.36 protein_coding missense_variant MODERATE 92A>G Glu31Gly
M0013475 PBIMGNHK_00005 7242 9 Skin 0.36 protein_coding synonymous_variant LOW 42A>G Val14Val
M0013476 PBIMGNHK_00006 7652 8 Skin 0.32 protein_coding synonymous_variant LOW 768T>C Thr256Thr
M0013477 PBIMGNHK_00006 8097 8 Skin 0.32 protein_coding missense_variant MODERATE 323T>C Val108Ala
M0013478 PBIMGNHK_00006 8129 8 Skin 0.32 protein_coding synonymous_variant LOW 291G>C Val97Val
M0013479 PBIMGNHK_00006 8174 7 Skin 0.28 protein_coding missense_variant MODERATE 246A>G Ile82Met
M0013480 PBIMGNHK_00006 8177 5 Skin 0.20 protein_coding synonymous_variant LOW 243C>T Gly81Gly
M0013481 PBIMGNHK_00006 8184 5 Skin 0.20 protein_coding missense_variant MODERATE 236G>C Ser79Thr
M0013482 PBIMGNHK_00006 8188 5 Skin 0.20 protein_coding synonymous_variant LOW 232C>T Leu78Leu
M0013483 PBIMGNHK_00006 8216 5 Skin 0.20 protein_coding synonymous_variant LOW 204C>T Ser68Ser
M0013484 PBIMGNHK_00006 8222 5 Skin 0.20 protein_coding synonymous_variant LOW 198T>C Arg66Arg
M0013485 PBIMGNHK_00006 8225 5 Skin 0.20 protein_coding synonymous_variant LOW 195G>A Gly65Gly
M0013486 PBIMGNHK_00002 2451 4 Skin 0.16 protein_coding synonymous_variant LOW 3132C>T Ser1044Ser
M0013487 PBIMGNHK_00002 3036 3 Skin 0.12 protein_coding synonymous_variant LOW 2547C>G Ala849Ala
M0013488 PBIMGNHK_00002 5524 9 Skin 0.36 protein_coding missense_variant MODERATE 59T>G Ile20Ser
M0013489 PBIMGNHK_00003 5729 5 Skin 0.20 protein_coding synonymous_variant LOW 99G>C Gly33Gly
M0013490 PBIMGNHK_00003 5769 4 Skin 0.16 protein_coding missense_variant MODERATE 59A>G Lys20Arg
M0013491 PBIMGNHK_00003 5774 4 Skin 0.16 protein_coding synonymous_variant LOW 54G>A Gly18Gly
M0013492 PBIMGNHK_00003 5775 4 Skin 0.16 protein_coding missense_variant MODERATE 53G>A Gly18Glu
M0013493 PBIMGNHK_00003 5780 4 Skin 0.16 protein_coding synonymous_variant LOW 48C>T Ala16Ala
M0013494 PBIMGNHK_00003 5789 4 Skin 0.16 protein_coding synonymous_variant LOW 39C>T Cys13Cys
M0013495 PBIMGNHK_00003 5794 3 Skin 0.12 protein_coding synonymous_variant LOW 34C>T Leu12Leu
M0013496 PBIMGNHK_00002 5829 4 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -247C>T None
M0013497 PBIMGNHK_00002 6026 6 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -444C>T None
M0013498 PBIMGNHK_00002 6047 5 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -465G>A None
M0013499 PBIMGNHK_00004 6686 6 Skin 0.24 protein_coding missense_variant MODERATE 150C>G Asp50Glu
M0013500 PBIMGNHK_00004 6689 6 Skin 0.24 protein_coding synonymous_variant LOW 147C>T Leu49Leu
M0013501 PBIMGNHK_00004 6706 12 Skin 0.48 protein_coding missense_variant MODERATE 130T>C Phe44Leu
M0013502 PBIMGNHK_00004 6710 12 Skin 0.48 protein_coding synonymous_variant LOW 126A>G Leu42Leu
M0013503 PBIMGNHK_00004 6713 12 Skin 0.48 protein_coding synonymous_variant LOW 123A>G Thr41Thr
M0013504 PBIMGNHK_00004 6716 12 Skin 0.48 protein_coding synonymous_variant LOW 120G>C Gly40Gly
M0013505 PBIMGNHK_00004 6728 12 Skin 0.48 protein_coding synonymous_variant LOW 108G>A Glu36Glu
M0013506 PBIMGNHK_00004 6737 12 Skin 0.48 protein_coding synonymous_variant LOW 99C>T Arg33Arg
M0013507 PBIMGNHK_00004 6739 12 Skin 0.48 protein_coding missense_variant MODERATE 97C>T Arg33Cys
M0013508 PBIMGNHK_00004 6745 12 Skin 0.48 protein_coding missense_variant MODERATE 91A>G Ser31Gly
M0013509 PBIMGNHK_00004 6749 12 Skin 0.48 protein_coding synonymous_variant LOW 87C>T Arg29Arg
M0013510 PBIMGNHK_00006 8144 5 Skin 0.20 protein_coding synonymous_variant LOW 276G>A Leu92Leu
M0013511 PBIMGNHK_00006 8261 4 Skin 0.16 protein_coding synonymous_variant LOW 159A>G Gln53Gln
M0013512 PBIMGNHK_00006 8262 4 Skin 0.16 protein_coding missense_variant MODERATE 158A>G Gln53Arg
M0013513 PBIMGNHK_00006 8339 4 Skin 0.16 protein_coding synonymous_variant LOW 81G>C Gly27Gly
M0013514 PBIMGNHK_00007 8630 5 Skin 0.20 protein_coding synonymous_variant LOW 159T>G Ser53Ser
M0013515 PBIMGNHK_00007 8636 5 Skin 0.20 protein_coding synonymous_variant LOW 153C>T Ser51Ser
M0013516 PBIMGNHK_00007 8777 4 Skin 0.16 protein_coding synonymous_variant LOW 12G>A Arg4Arg
M0013517 PBIMGNHK_00008 8805 4 Skin 0.16 protein_coding synonymous_variant LOW 1453C>T Leu485Leu
M0013518 PBIMGNHK_00008 8806 4 Skin 0.16 protein_coding synonymous_variant LOW 1452C>T Phe484Phe
M0013519 PBIMGNHK_00008 8809 4 Skin 0.16 protein_coding synonymous_variant LOW 1449G>C Gly483Gly
M0013520 PBIMGNHK_00008 8824 3 Skin 0.12 protein_coding synonymous_variant LOW 1434G>A Gln478Gln
M0013521 PBIMGNHK_00008 8902 3 Skin 0.12 protein_coding synonymous_variant LOW 1356C>G Leu452Leu
M0013522 PBIMGNHK_00008 8908 3 Skin 0.12 protein_coding synonymous_variant LOW 1350G>A Val450Val
M0013523 PBIMGNHK_00008 8934 3 Skin 0.12 protein_coding missense_variant MODERATE 1324C>G Gln442Glu
M0013524 PBIMGNHK_00008 8977 3 Skin 0.12 protein_coding synonymous_variant LOW 1281G>A Gly427Gly
M0013525 PBIMGNHK_00008 8980 4 Skin 0.16 protein_coding synonymous_variant LOW 1278C>G Gly426Gly
M0013526 PBIMGNHK_00008 8983 3 Skin 0.12 protein_coding synonymous_variant LOW 1275C>T Asp425Asp
M0013527 PBIMGNHK_00008 9019 4 Skin 0.16 protein_coding synonymous_variant LOW 1239C>A Ser413Ser
M0013528 PBIMGNHK_00008 9022 4 Skin 0.16 protein_coding synonymous_variant LOW 1236G>A Thr412Thr
M0013529 PBIMGNHK_00008 9025 3 Skin 0.12 protein_coding synonymous_variant LOW 1233G>A Ala411Ala
M0013530 PBIMGNHK_00008 9043 4 Skin 0.16 protein_coding synonymous_variant LOW 1215A>G Ala405Ala
M0013531 PBIMGNHK_00008 9046 3 Skin 0.12 protein_coding synonymous_variant LOW 1212G>A Pro404Pro
M0013532 PBIMGNHK_00008 9140 3 Skin 0.12 protein_coding missense_variant MODERATE 1118G>A Cys373Tyr
M0013533 PBIMGNHK_00008 9154 3 Skin 0.12 protein_coding synonymous_variant LOW 1104G>A Val368Val
M0013534 PBIMGNHK_00008 9156 3 Skin 0.12 protein_coding missense_variant MODERATE 1102G>A Val368Met
M0013535 PBIMGNHK_00008 9223 3 Skin 0.12 protein_coding synonymous_variant LOW 1035A>G Lys345Lys
M0013536 PBIMGNHK_00008 9232 3 Skin 0.12 protein_coding synonymous_variant LOW 1026G>A Glu342Glu
M0013537 PBIMGNHK_00008 9763 3 Skin 0.12 protein_coding synonymous_variant LOW 495A>G Pro165Pro
M0013538 PBIMGNHK_00008 9899 3 Skin 0.12 protein_coding missense_variant MODERATE 359T>C Val120Ala
M0013539 PBIMGNHK_00002 4743 5 Skin 0.20 protein_coding synonymous_variant LOW 840T>C Ala280Ala
M0013540 PBIMGNHK_00002 1917 4 Skin 0.16 protein_coding synonymous_variant LOW 3666C>T Val1222Val
M0013541 PBIMGNHK_00002 1932 3 Skin 0.12 protein_coding synonymous_variant LOW 3651C>T Pro1217Pro
M0013542 PBIMGNHK_00002 1935 3 Skin 0.12 protein_coding synonymous_variant LOW 3648T>C His1216His
M0013543 PBIMGNHK_00002 2013 3 Skin 0.12 protein_coding synonymous_variant LOW 3570C>G Ala1190Ala
M0013544 PBIMGNHK_00002 2028 3 Skin 0.12 protein_coding synonymous_variant LOW 3555C>T Tyr1185Tyr
M0013545 PBIMGNHK_00002 2046 3 Skin 0.12 protein_coding missense_variant MODERATE 3537C>A Asp1179Glu
M0013546 PBIMGNHK_00002 2082 3 Skin 0.12 protein_coding synonymous_variant LOW 3501G>T Pro1167Pro
M0013547 PBIMGNHK_00002 2733 3 Skin 0.12 protein_coding synonymous_variant LOW 2850G>C Thr950Thr
M0013548 PBIMGNHK_00004 6733 9 Skin 0.36 protein_coding missense_variant MODERATE 103G>C Ala35Pro
M0013549 PBIMGNHK_00005 6894 9 Skin 0.36 protein_coding synonymous_variant LOW 390C>T Phe130Phe
M0013550 PBIMGNHK_00001 178 6 Skin 0.24 protein_coding missense_variant MODERATE 239A>C Glu80Ala
M0013551 PBIMGNHK_00002 2907 4 Skin 0.16 protein_coding synonymous_variant LOW 2676G>A Glu892Glu
M0013552 PBIMGNHK_00002 3504 5 Skin 0.20 protein_coding synonymous_variant LOW 2079C>T Thr693Thr
M0013553 PBIMGNHK_00002 3507 5 Skin 0.20 protein_coding synonymous_variant LOW 2076G>A Ser692Ser
M0013554 PBIMGNHK_00002 3960 9 Skin 0.36 protein_coding missense_variant MODERATE 1623G>A Met541Ile
M0013555 PBIMGNHK_00002 4134 3 Skin 0.12 protein_coding synonymous_variant LOW 1449T>C Asp483Asp
M0013556 PBIMGNHK_00002 4170 4 Skin 0.16 protein_coding synonymous_variant LOW 1413C>T Ala471Ala
M0013557 PBIMGNHK_00002 4197 3 Skin 0.12 protein_coding synonymous_variant LOW 1386A>G Leu462Leu
M0013558 PBIMGNHK_00002 4725 3 Skin 0.12 protein_coding synonymous_variant LOW 858C>T Ser286Ser
M0013559 PBIMGNHK_00006 8293 3 Skin 0.12 protein_coding missense_variant MODERATE 127A>G Ser43Gly
M0013560 PBIMGNHK_00006 8360 3 Skin 0.12 protein_coding synonymous_variant LOW 60T>C Cys20Cys
M0013561 PBIMGNHK_00005 7085 4 Skin 0.16 protein_coding synonymous_variant LOW 199C>T Leu67Leu
M0013562 PBIMGNHK_00002 5621 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -39G>A None
M0013563 PBIMGNHK_00002 5625 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -43T>C None
M0013564 PBIMGNHK_00002 5626 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -44G>T None
M0013565 PBIMGNHK_00002 5628 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -46A>C None
M0013566 PBIMGNHK_00002 5629 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -47C>T None
M0013567 PBIMGNHK_00002 5630 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -48T>C None
M0013568 PBIMGNHK_00003 5641 3 Skin 0.12 protein_coding missense_variant MODERATE 187C>T His63Tyr
M0013569 PBIMGNHK_00003 5652 3 Skin 0.12 protein_coding missense_variant MODERATE 176G>A Arg59Gln






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term