Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1752
  Reference Plasmid   1111525849644360_bin.33__k141_362
  Reference Plasmid Size   11837
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0013570 HFGKLEFM_00004 3639 3 Skin 0.16 protein_coding missense_variant MODERATE 110G>A Ser37Asn
M0013571 HFGKLEFM_00004 3674 4 Skin 0.21 protein_coding synonymous_variant LOW 75T>C Val25Val
M0013572 HFGKLEFM_00005 4086 7 Skin 0.37 protein_coding synonymous_variant LOW 135C>G Ala45Ala
M0013573 HFGKLEFM_00005 4113 6 Skin 0.32 protein_coding synonymous_variant LOW 162C>A Thr54Thr
M0013574 HFGKLEFM_00005 4116 6 Skin 0.32 protein_coding synonymous_variant LOW 165G>C Gly55Gly
M0013575 HFGKLEFM_00005 4221 4 Skin 0.21 protein_coding synonymous_variant LOW 270C>T His90His
M0013576 HFGKLEFM_00005 4692 8 Skin 0.42 protein_coding synonymous_variant LOW 741A>G Arg247Arg
M0013577 HFGKLEFM_00005 4785 6 Skin 0.32 protein_coding synonymous_variant LOW 834G>A Val278Val
M0013578 HFGKLEFM_00005 4793 6 Skin 0.32 protein_coding missense_variant MODERATE 842G>C Gly281Ala
M0013579 HFGKLEFM_00005 4797 6 Skin 0.32 protein_coding synonymous_variant LOW 846C>G Ala282Ala
M0013580 HFGKLEFM_00005 4813 6 Skin 0.32 protein_coding missense_variant MODERATE 862G>A Val288Ile
M0013581 HFGKLEFM_00005 4877 11 Skin 0.58 protein_coding missense_variant MODERATE 926G>C Gly309Ala
M0013582 HFGKLEFM_00005 4878 11 Skin 0.58 protein_coding synonymous_variant LOW 927C>G Gly309Gly
M0013583 HFGKLEFM_00005 4890 11 Skin 0.58 protein_coding synonymous_variant LOW 939G>A Gly313Gly
M0013584 HFGKLEFM_00006 5015 4 Skin 0.21 protein_coding synonymous_variant LOW 42C>G Pro14Pro
M0013585 HFGKLEFM_00006 5030 4 Skin 0.21 protein_coding synonymous_variant LOW 57C>A Arg19Arg
M0013586 HFGKLEFM_00002 5329 12 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -3349G>C None
M0013587 HFGKLEFM_00007 5476 6 Skin 0.32 protein_coding synonymous_variant LOW 117G>A Leu39Leu
M0013588 HFGKLEFM_00007 5512 9 Skin 0.47 protein_coding synonymous_variant LOW 153C>T Arg51Arg
M0013589 HFGKLEFM_00007 5533 9 Skin 0.47 protein_coding synonymous_variant LOW 174C>T Ala58Ala
M0013590 HFGKLEFM_00007 5707 9 Skin 0.47 protein_coding synonymous_variant LOW 348T>C Tyr116Tyr
M0013591 HFGKLEFM_00007 5716 9 Skin 0.47 protein_coding synonymous_variant LOW 357T>G Gly119Gly
M0013592 HFGKLEFM_00007 5722 9 Skin 0.47 protein_coding synonymous_variant LOW 363C>G Val121Val
M0013593 HFGKLEFM_00007 5725 9 Skin 0.47 protein_coding synonymous_variant LOW 366T>C Ser122Ser
M0013594 HFGKLEFM_00007 5727 9 Skin 0.47 protein_coding missense_variant MODERATE 368A>G Asp123Gly
M0013595 HFGKLEFM_00007 5731 9 Skin 0.47 protein_coding synonymous_variant LOW 372G>A Glu124Glu
M0013596 HFGKLEFM_00007 5758 12 Skin 0.63 protein_coding synonymous_variant LOW 399T>C Arg133Arg
M0013597 HFGKLEFM_00007 5779 12 Skin 0.63 protein_coding synonymous_variant LOW 420G>C Leu140Leu
M0013598 HFGKLEFM_00007 5783 12 Skin 0.63 protein_coding missense_variant MODERATE 424G>A Val142Ile
M0013599 HFGKLEFM_00007 5784 12 Skin 0.63 protein_coding missense_variant MODERATE 425T>C Val142Ala
M0013600 HFGKLEFM_00007 5785 14 Skin 0.74 protein_coding synonymous_variant LOW 426T>G Val142Val
M0013601 HFGKLEFM_00007 5950 12 Skin 0.63 protein_coding synonymous_variant LOW 591A>G Lys197Lys
M0013602 HFGKLEFM_00007 5968 8 Skin 0.42 protein_coding synonymous_variant LOW 609G>C Val203Val
M0013603 HFGKLEFM_00002 6127 12 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -4147T>C None
M0013604 HFGKLEFM_00008 6365 8 Skin 0.42 protein_coding synonymous_variant LOW 375G>T Leu125Leu
M0013605 HFGKLEFM_00008 6638 8 Skin 0.42 protein_coding synonymous_variant LOW 102C>T Arg34Arg
M0013606 HFGKLEFM_00008 6647 8 Skin 0.42 protein_coding synonymous_variant LOW 93G>A Glu31Glu
M0013607 HFGKLEFM_00008 6665 10 Skin 0.53 protein_coding synonymous_variant LOW 75C>G Ala25Ala
M0013608 HFGKLEFM_00002 6750 7 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -4770G>A None
M0013609 HFGKLEFM_00002 6775 7 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -4795C>T None
M0013610 HFGKLEFM_00002 6778 8 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -4798T>G None
M0013611 HFGKLEFM_00002 6945 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4965A>C None
M0013612 HFGKLEFM_00002 6947 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4967T>G None
M0013613 HFGKLEFM_00002 6949 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4969C>T None
M0013614 HFGKLEFM_00009 7093 6 Skin 0.32 protein_coding synonymous_variant LOW 39C>T Thr13Thr
M0013615 HFGKLEFM_00009 7150 6 Skin 0.32 protein_coding synonymous_variant LOW 96T>C Leu32Leu
M0013616 HFGKLEFM_00009 7453 5 Skin 0.26 protein_coding synonymous_variant LOW 399C>T Gly133Gly
M0013617 HFGKLEFM_00009 7456 9 Skin 0.47 protein_coding synonymous_variant LOW 402A>G Gly134Gly
M0013618 HFGKLEFM_00009 7630 7 Skin 0.37 protein_coding synonymous_variant LOW 576A>G Glu192Glu
M0013619 HFGKLEFM_00009 7633 7 Skin 0.37 protein_coding synonymous_variant LOW 579A>G Glu193Glu
M0013620 HFGKLEFM_00009 7675 5 Skin 0.26 protein_coding synonymous_variant LOW 621C>G Gly207Gly
M0013621 HFGKLEFM_00009 7690 5 Skin 0.26 protein_coding synonymous_variant LOW 636G>C Leu212Leu
M0013622 HFGKLEFM_00010 8261 6 Skin 0.32 protein_coding synonymous_variant LOW 36G>C Thr12Thr
M0013623 HFGKLEFM_00010 8264 4 Skin 0.21 protein_coding synonymous_variant LOW 39G>A Leu13Leu
M0013624 HFGKLEFM_00010 8268 6 Skin 0.32 protein_coding synonymous_variant LOW 43C>T Leu15Leu
M0013625 HFGKLEFM_00010 8270 6 Skin 0.32 protein_coding synonymous_variant LOW 45A>G Leu15Leu
M0013626 HFGKLEFM_00010 8273 6 Skin 0.32 protein_coding synonymous_variant LOW 48C>G Leu16Leu
M0013627 HFGKLEFM_00010 8275 6 Skin 0.32 protein_coding missense_variant MODERATE 50C>T Ala17Val
M0013628 HFGKLEFM_00010 8285 6 Skin 0.32 protein_coding synonymous_variant LOW 60G>C Val20Val
M0013629 HFGKLEFM_00010 8288 6 Skin 0.32 protein_coding synonymous_variant LOW 63C>T Val21Val
M0013630 HFGKLEFM_00010 8294 6 Skin 0.32 protein_coding synonymous_variant LOW 69A>G Ser23Ser
M0013631 HFGKLEFM_00010 8296 6 Skin 0.32 protein_coding missense_variant MODERATE 71T>C Val24Ala
M0013632 HFGKLEFM_00010 8318 6 Skin 0.32 protein_coding synonymous_variant LOW 93G>A Leu31Leu
M0013633 HFGKLEFM_00010 8333 6 Skin 0.32 protein_coding synonymous_variant LOW 108C>T Asp36Asp
M0013634 HFGKLEFM_00010 8348 6 Skin 0.32 protein_coding synonymous_variant LOW 123C>G Gly41Gly
M0013635 HFGKLEFM_00010 8381 6 Skin 0.32 protein_coding synonymous_variant LOW 156T>C Val52Val
M0013636 HFGKLEFM_00010 8390 6 Skin 0.32 protein_coding synonymous_variant LOW 165T>C Tyr55Tyr
M0013637 HFGKLEFM_00010 8445 7 Skin 0.37 protein_coding synonymous_variant LOW 220C>T Leu74Leu
M0013638 HFGKLEFM_00010 8453 6 Skin 0.32 protein_coding synonymous_variant LOW 228G>C Val76Val
M0013639 HFGKLEFM_00010 8459 8 Skin 0.42 protein_coding synonymous_variant LOW 234G>A Ala78Ala
M0013640 HFGKLEFM_00010 8462 8 Skin 0.42 protein_coding synonymous_variant LOW 237C>A Gly79Gly
M0013641 HFGKLEFM_00010 8465 8 Skin 0.42 protein_coding synonymous_variant LOW 240G>C Thr80Thr
M0013642 HFGKLEFM_00010 8474 9 Skin 0.47 protein_coding synonymous_variant LOW 249C>G Leu83Leu
M0013643 HFGKLEFM_00010 8489 6 Skin 0.32 protein_coding synonymous_variant LOW 264G>C Gly88Gly
M0013644 HFGKLEFM_00010 8492 6 Skin 0.32 protein_coding synonymous_variant LOW 267T>C Tyr89Tyr
M0013645 HFGKLEFM_00010 8498 6 Skin 0.32 protein_coding synonymous_variant LOW 273G>A Leu91Leu
M0013646 HFGKLEFM_00010 8579 6 Skin 0.32 protein_coding synonymous_variant LOW 354C>T Phe118Phe
M0013647 HFGKLEFM_00010 8757 8 Skin 0.42 protein_coding missense_variant MODERATE 532A>T Thr178Ser
M0013648 HFGKLEFM_00011 9348 8 Skin 0.42 protein_coding synonymous_variant LOW 180C>T Ala60Ala
M0013649 HFGKLEFM_00011 9766 9 Skin 0.47 protein_coding synonymous_variant LOW 598T>C Leu200Leu
M0013650 HFGKLEFM_00011 9843 3 Skin 0.16 protein_coding synonymous_variant LOW 675G>C Pro225Pro
M0013651 HFGKLEFM_00012 10280 4 Skin 0.21 protein_coding synonymous_variant LOW 306T>C Tyr102Tyr
M0013652 HFGKLEFM_00012 10307 4 Skin 0.21 protein_coding synonymous_variant LOW 333A>G Lys111Lys
M0013653 HFGKLEFM_00012 10496 6 Skin 0.32 protein_coding synonymous_variant LOW 522A>G Glu174Glu
M0013654 HFGKLEFM_00012 10501 6 Skin 0.32 protein_coding missense_variant MODERATE 527G>C Arg176Thr
M0013655 HFGKLEFM_00012 10535 9 Skin 0.47 protein_coding synonymous_variant LOW 561G>A Glu187Glu
M0013656 HFGKLEFM_00012 10721 5 Skin 0.26 protein_coding synonymous_variant LOW 747A>G Val249Val
M0013657 HFGKLEFM_00002 1173 3 Skin 0.16 protein_coding synonymous_variant LOW 808T>C Leu270Leu
M0013658 HFGKLEFM_00002 1197 4 Skin 0.21 protein_coding missense_variant MODERATE 784C>T Pro262Ser
M0013659 HFGKLEFM_00002 1421 8 Skin 0.42 protein_coding missense_variant MODERATE 560T>G Val187Gly
M0013660 HFGKLEFM_00002 1466 8 Skin 0.42 protein_coding missense_variant MODERATE 515G>C Gly172Ala
M0013661 HFGKLEFM_00002 1504 7 Skin 0.37 protein_coding synonymous_variant LOW 477G>C Pro159Pro
M0013662 HFGKLEFM_00002 1522 6 Skin 0.32 protein_coding synonymous_variant LOW 459G>C Val153Val
M0013663 HFGKLEFM_00002 1524 6 Skin 0.32 protein_coding missense_variant MODERATE 457G>A Val153Met
M0013664 HFGKLEFM_00002 1525 6 Skin 0.32 protein_coding synonymous_variant LOW 456G>C Ala152Ala
M0013665 HFGKLEFM_00002 1531 6 Skin 0.32 protein_coding synonymous_variant LOW 450A>C Arg150Arg
M0013666 HFGKLEFM_00002 1537 6 Skin 0.32 protein_coding synonymous_variant LOW 444T>C Phe148Phe
M0013667 HFGKLEFM_00003 2211 7 Skin 0.37 protein_coding synonymous_variant LOW 522G>A Glu174Glu
M0013668 HFGKLEFM_00003 2238 7 Skin 0.37 protein_coding synonymous_variant LOW 495T>C His165His
M0013669 HFGKLEFM_00003 2316 4 Skin 0.21 protein_coding synonymous_variant LOW 417A>G Glu139Glu
M0013670 HFGKLEFM_00003 2319 4 Skin 0.21 protein_coding synonymous_variant LOW 414C>T Thr138Thr
M0013671 HFGKLEFM_00003 2338 8 Skin 0.42 protein_coding missense_variant MODERATE 395T>C Ile132Thr
M0013672 HFGKLEFM_00003 2402 5 Skin 0.26 protein_coding missense_variant MODERATE 331G>A Ala111Thr
M0013673 HFGKLEFM_00003 2523 10 Skin 0.53 protein_coding synonymous_variant LOW 210A>G Gln70Gln
M0013674 HFGKLEFM_00003 2613 10 Skin 0.53 protein_coding synonymous_variant LOW 120A>T Pro40Pro
M0013675 HFGKLEFM_00003 2628 10 Skin 0.53 protein_coding synonymous_variant LOW 105C>T Asn35Asn
M0013676 HFGKLEFM_00001 3833 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3519T>C None
M0013677 HFGKLEFM_00001 3906 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3592G>C None
M0013678 HFGKLEFM_00005 4341 3 Skin 0.16 protein_coding synonymous_variant LOW 390C>T Ile130Ile
M0013679 HFGKLEFM_00005 4416 3 Skin 0.16 protein_coding synonymous_variant LOW 465G>T Pro155Pro
M0013680 HFGKLEFM_00005 4905 8 Skin 0.42 protein_coding synonymous_variant LOW 954C>T Arg318Arg
M0013681 HFGKLEFM_00005 4965 3 Skin 0.16 protein_coding synonymous_variant LOW 1014C>T Thr338Thr
M0013682 HFGKLEFM_00006 4985 3 Skin 0.16 protein_coding synonymous_variant LOW 12C>T Arg4Arg
M0013683 HFGKLEFM_00006 4991 3 Skin 0.16 protein_coding synonymous_variant LOW 18G>T Pro6Pro
M0013684 HFGKLEFM_00006 5060 3 Skin 0.16 protein_coding synonymous_variant LOW 87G>C Val29Val
M0013685 HFGKLEFM_00006 5072 3 Skin 0.16 protein_coding synonymous_variant LOW 99T>C His33His
M0013686 HFGKLEFM_00006 5078 3 Skin 0.16 protein_coding synonymous_variant LOW 105C>G Leu35Leu
M0013687 HFGKLEFM_00006 5084 3 Skin 0.16 protein_coding synonymous_variant LOW 111A>C Pro37Pro
M0013688 HFGKLEFM_00006 5087 3 Skin 0.16 protein_coding synonymous_variant LOW 114C>G Arg38Arg
M0013689 HFGKLEFM_00006 5090 3 Skin 0.16 protein_coding synonymous_variant LOW 117T>A Ser39Ser
M0013690 HFGKLEFM_00006 5122 3 Skin 0.16 protein_coding missense_variant MODERATE 149A>C Glu50Ala
M0013691 HFGKLEFM_00006 5123 3 Skin 0.16 protein_coding synonymous_variant LOW 150A>G Glu50Glu
M0013692 HFGKLEFM_00006 5129 3 Skin 0.16 protein_coding synonymous_variant LOW 156G>C Pro52Pro
M0013693 HFGKLEFM_00006 5141 4 Skin 0.21 protein_coding synonymous_variant LOW 168T>G Leu56Leu
M0013694 HFGKLEFM_00007 5845 6 Skin 0.32 protein_coding synonymous_variant LOW 486T>C Gly162Gly
M0013695 HFGKLEFM_00008 6401 6 Skin 0.32 protein_coding synonymous_variant LOW 339T>C Pro113Pro
M0013696 HFGKLEFM_00008 6427 5 Skin 0.26 protein_coding synonymous_variant LOW 313T>C Leu105Leu
M0013697 HFGKLEFM_00008 6437 5 Skin 0.26 protein_coding synonymous_variant LOW 303G>A Leu101Leu
M0013698 HFGKLEFM_00008 6452 6 Skin 0.32 protein_coding synonymous_variant LOW 288A>G Ala96Ala
M0013699 HFGKLEFM_00011 9501 4 Skin 0.21 protein_coding synonymous_variant LOW 333C>G Val111Val
M0013700 HFGKLEFM_00011 9696 6 Skin 0.32 protein_coding synonymous_variant LOW 528C>G Gly176Gly
M0013701 HFGKLEFM_00011 9741 7 Skin 0.37 protein_coding synonymous_variant LOW 573C>G Ala191Ala
M0013702 HFGKLEFM_00012 10371 7 Skin 0.37 protein_coding missense_variant MODERATE 397G>A Asp133Asn
M0013703 HFGKLEFM_00012 10421 4 Skin 0.21 protein_coding synonymous_variant LOW 447G>C Ala149Ala
M0013704 HFGKLEFM_00012 10430 4 Skin 0.21 protein_coding synonymous_variant LOW 456A>G Gly152Gly
M0013705 HFGKLEFM_00012 10448 4 Skin 0.21 protein_coding synonymous_variant LOW 474T>G Gly158Gly
M0013706 HFGKLEFM_00012 10451 4 Skin 0.21 protein_coding synonymous_variant LOW 477T>C Arg159Arg
M0013707 HFGKLEFM_00012 10454 4 Skin 0.21 protein_coding synonymous_variant LOW 480T>C Tyr160Tyr
M0013708 HFGKLEFM_00012 10457 4 Skin 0.21 protein_coding synonymous_variant LOW 483C>G Thr161Thr
M0013709 HFGKLEFM_00012 10460 4 Skin 0.21 protein_coding synonymous_variant LOW 486C>A Pro162Pro
M0013710 HFGKLEFM_00012 10461 4 Skin 0.21 protein_coding missense_variant MODERATE 487A>G Lys163Glu
M0013711 HFGKLEFM_00012 10462 4 Skin 0.21 protein_coding missense_variant MODERATE 488A>G Lys163Arg
M0013712 HFGKLEFM_00012 10464 4 Skin 0.21 protein_coding missense_variant MODERATE 490C>A Gln164Lys
M0013713 HFGKLEFM_00012 10634 6 Skin 0.32 protein_coding synonymous_variant LOW 660A>G Gln220Gln
M0013714 HFGKLEFM_00012 10724 3 Skin 0.16 protein_coding synonymous_variant LOW 750C>T Gly250Gly
M0013715 HFGKLEFM_00012 10865 6 Skin 0.32 protein_coding synonymous_variant LOW 891T>G Val297Val
M0013716 HFGKLEFM_00012 10884 6 Skin 0.32 protein_coding missense_variant MODERATE 910C>G Pro304Ala
M0013717 HFGKLEFM_00001 403 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -89C>G None
M0013718 HFGKLEFM_00001 404 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -90C>T None
M0013719 HFGKLEFM_00001 410 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -96C>T None
M0013720 HFGKLEFM_00001 412 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -98G>A None
M0013721 HFGKLEFM_00002 469 4 Skin 0.21 protein_coding synonymous_variant LOW 1512G>C Thr504Thr
M0013722 HFGKLEFM_00002 532 3 Skin 0.16 protein_coding synonymous_variant LOW 1449T>G Pro483Pro
M0013723 HFGKLEFM_00002 604 3 Skin 0.16 protein_coding synonymous_variant LOW 1377T>C Ile459Ile
M0013724 HFGKLEFM_00002 625 3 Skin 0.16 protein_coding synonymous_variant LOW 1356A>G Ala452Ala
M0013725 HFGKLEFM_00002 661 3 Skin 0.16 protein_coding synonymous_variant LOW 1320C>T Val440Val
M0013726 HFGKLEFM_00002 670 3 Skin 0.16 protein_coding synonymous_variant LOW 1311C>G Ala437Ala
M0013727 HFGKLEFM_00002 676 3 Skin 0.16 protein_coding synonymous_variant LOW 1305T>C Gly435Gly
M0013728 HFGKLEFM_00002 742 3 Skin 0.16 protein_coding synonymous_variant LOW 1239C>T Arg413Arg
M0013729 HFGKLEFM_00002 1235 4 Skin 0.21 protein_coding missense_variant MODERATE 746G>A Ser249Asn
M0013730 HFGKLEFM_00002 1258 3 Skin 0.16 protein_coding synonymous_variant LOW 723C>T Asp241Asp
M0013731 HFGKLEFM_00002 1327 5 Skin 0.26 protein_coding synonymous_variant LOW 654T>C His218His
M0013732 HFGKLEFM_00002 1348 5 Skin 0.26 protein_coding synonymous_variant LOW 633C>G Thr211Thr
M0013733 HFGKLEFM_00002 1360 5 Skin 0.26 protein_coding synonymous_variant LOW 621G>C Val207Val
M0013734 HFGKLEFM_00002 1441 3 Skin 0.16 protein_coding synonymous_variant LOW 540C>T Asp180Asp
M0013735 HFGKLEFM_00002 1450 3 Skin 0.16 protein_coding synonymous_variant LOW 531G>A Ala177Ala
M0013736 HFGKLEFM_00003 2256 3 Skin 0.16 protein_coding synonymous_variant LOW 477G>C Arg159Arg
M0013737 HFGKLEFM_00003 2325 3 Skin 0.16 protein_coding synonymous_variant LOW 408A>G Pro136Pro
M0013738 HFGKLEFM_00003 2472 5 Skin 0.26 protein_coding synonymous_variant LOW 261C>G Thr87Thr
M0013739 HFGKLEFM_00003 2705 3 Skin 0.16 protein_coding missense_variant MODERATE 28C>T Leu10Phe
M0013740 HFGKLEFM_00001 2744 4 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2430A>G None
M0013741 HFGKLEFM_00001 2788 4 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2474G>A None
M0013742 HFGKLEFM_00001 2790 4 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2476A>G None
M0013743 HFGKLEFM_00001 2848 7 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -2534G>T None
M0013744 HFGKLEFM_00001 2852 7 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -2538T>G None
M0013745 HFGKLEFM_00004 2969 4 Skin 0.21 protein_coding synonymous_variant LOW 780T>C Thr260Thr
M0013746 HFGKLEFM_00007 5608 4 Skin 0.21 protein_coding synonymous_variant LOW 249T>C His83His
M0013747 HFGKLEFM_00007 5854 3 Skin 0.16 protein_coding synonymous_variant LOW 495C>T Tyr165Tyr
M0013748 HFGKLEFM_00007 6001 3 Skin 0.16 protein_coding synonymous_variant LOW 642C>G Arg214Arg
M0013749 HFGKLEFM_00007 6034 4 Skin 0.21 protein_coding synonymous_variant LOW 675G>A Thr225Thr
M0013750 HFGKLEFM_00007 6043 4 Skin 0.21 protein_coding synonymous_variant LOW 684G>C Thr228Thr
M0013751 HFGKLEFM_00007 6046 5 Skin 0.26 protein_coding synonymous_variant LOW 687G>T Ala229Ala
M0013752 HFGKLEFM_00007 6109 5 Skin 0.26 protein_coding synonymous_variant LOW 750C>T Ile250Ile
M0013753 HFGKLEFM_00002 6149 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4169G>C None
M0013754 HFGKLEFM_00002 6150 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4170T>C None
M0013755 HFGKLEFM_00009 7333 3 Skin 0.16 protein_coding synonymous_variant LOW 279G>C Val93Val
M0013756 HFGKLEFM_00009 7363 4 Skin 0.21 protein_coding synonymous_variant LOW 309G>C Arg103Arg
M0013757 HFGKLEFM_00009 7369 3 Skin 0.16 protein_coding synonymous_variant LOW 315A>G Ala105Ala
M0013758 HFGKLEFM_00009 7408 3 Skin 0.16 protein_coding synonymous_variant LOW 354A>G Val118Val
M0013759 HFGKLEFM_00009 7411 3 Skin 0.16 protein_coding synonymous_variant LOW 357A>G Gln119Gln
M0013760 HFGKLEFM_00009 7426 3 Skin 0.16 protein_coding synonymous_variant LOW 372C>G Gly124Gly
M0013761 HFGKLEFM_00009 7432 3 Skin 0.16 protein_coding synonymous_variant LOW 378C>G Arg126Arg
M0013762 HFGKLEFM_00009 7474 4 Skin 0.21 protein_coding synonymous_variant LOW 420G>A Ala140Ala
M0013763 HFGKLEFM_00009 7498 4 Skin 0.21 protein_coding synonymous_variant LOW 444A>G Gln148Gln
M0013764 HFGKLEFM_00009 7516 4 Skin 0.21 protein_coding synonymous_variant LOW 462G>C Leu154Leu
M0013765 HFGKLEFM_00009 7913 4 Skin 0.21 protein_coding missense_variant MODERATE 859G>A Asp287Asn
M0013766 HFGKLEFM_00009 7914 4 Skin 0.21 protein_coding missense_variant MODERATE 860A>T Asp287Val
M0013767 HFGKLEFM_00009 7915 4 Skin 0.21 protein_coding synonymous_variant LOW 861C>T Asp287Asp
M0013768 HFGKLEFM_00009 7918 4 Skin 0.21 protein_coding missense_variant MODERATE 864G>T Glu288Asp
M0013769 HFGKLEFM_00009 7921 4 Skin 0.21 protein_coding synonymous_variant LOW 867G>C Thr289Thr
M0013770 HFGKLEFM_00009 7924 4 Skin 0.21 protein_coding synonymous_variant LOW 870A>G Glu290Glu
M0013771 HFGKLEFM_00009 7936 4 Skin 0.21 protein_coding synonymous_variant LOW 882C>T Val294Val
M0013772 HFGKLEFM_00009 7945 4 Skin 0.21 protein_coding synonymous_variant LOW 891T>C Arg297Arg
M0013773 HFGKLEFM_00009 8020 4 Skin 0.21 protein_coding missense_variant MODERATE 966A>C Leu322Phe
M0013774 HFGKLEFM_00011 9701 5 Skin 0.26 protein_coding missense_variant MODERATE 533A>G Asn178Ser
M0013775 HFGKLEFM_00011 9713 5 Skin 0.26 protein_coding missense_variant MODERATE 545G>C Gly182Ala
M0013776 HFGKLEFM_00011 9750 6 Skin 0.32 protein_coding synonymous_variant LOW 582C>A Gly194Gly
M0013777 HFGKLEFM_00011 9759 6 Skin 0.32 protein_coding synonymous_variant LOW 591G>A Ser197Ser
M0013778 HFGKLEFM_00011 9777 6 Skin 0.32 protein_coding synonymous_variant LOW 609T>C Phe203Phe
M0013779 HFGKLEFM_00011 9783 6 Skin 0.32 protein_coding synonymous_variant LOW 615G>C Leu205Leu
M0013780 HFGKLEFM_00011 9879 6 Skin 0.32 protein_coding synonymous_variant LOW 711C>T Thr237Thr
M0013781 HFGKLEFM_00011 9882 5 Skin 0.26 protein_coding synonymous_variant LOW 714C>T Pro238Pro
M0013782 HFGKLEFM_00012 10778 5 Skin 0.26 protein_coding synonymous_variant LOW 804T>C Ala268Ala
M0013783 HFGKLEFM_00012 10849 4 Skin 0.21 protein_coding missense_variant MODERATE 875A>G Lys292Arg
M0013784 HFGKLEFM_00012 10850 4 Skin 0.21 protein_coding missense_variant MODERATE 876G>T Lys292Asn
M0013785 HFGKLEFM_00012 10892 5 Skin 0.26 protein_coding synonymous_variant LOW 918T>C Ile306Ile
M0013786 HFGKLEFM_00012 10932 3 Skin 0.16 protein_coding missense_variant MODERATE 958G>C Ala320Pro
M0013787 HFGKLEFM_00012 10933 3 Skin 0.16 protein_coding missense_variant MODERATE 959C>A Ala320Glu
M0013788 HFGKLEFM_00012 10940 3 Skin 0.16 protein_coding synonymous_variant LOW 966G>C Leu322Leu
M0013789 HFGKLEFM_00012 10946 3 Skin 0.16 protein_coding synonymous_variant LOW 972C>T Asp324Asp
M0013790 HFGKLEFM_00012 10949 3 Skin 0.16 protein_coding synonymous_variant LOW 975T>C Pro325Pro
M0013791 HFGKLEFM_00012 10955 3 Skin 0.16 protein_coding synonymous_variant LOW 981C>G Leu327Leu
M0013792 HFGKLEFM_00012 10960 3 Skin 0.16 protein_coding missense_variant MODERATE 986C>G Ala329Gly
M0013793 HFGKLEFM_00012 10961 3 Skin 0.16 protein_coding synonymous_variant LOW 987G>A Ala329Ala
M0013794 HFGKLEFM_00012 10964 3 Skin 0.16 protein_coding synonymous_variant LOW 990A>G Gln330Gln
M0013795 HFGKLEFM_00005 4062 4 Skin 0.21 protein_coding synonymous_variant LOW 111C>T Tyr37Tyr
M0013796 HFGKLEFM_00005 4161 6 Skin 0.32 protein_coding synonymous_variant LOW 210A>G Gln70Gln
M0013797 HFGKLEFM_00005 4176 4 Skin 0.21 protein_coding synonymous_variant LOW 225G>A Leu75Leu
M0013798 HFGKLEFM_00008 6721 3 Skin 0.16 protein_coding missense_variant MODERATE 19T>C Ser7Pro
M0013799 HFGKLEFM_00008 6733 3 Skin 0.16 protein_coding missense_variant MODERATE 7A>G Asn3Asp
M0013800 HFGKLEFM_00011 9282 3 Skin 0.16 protein_coding synonymous_variant LOW 114G>A Ala38Ala
M0013801 HFGKLEFM_00013 11660 3 Skin 0.16 protein_coding synonymous_variant LOW 168C>T Phe56Phe
M0013802 HFGKLEFM_00013 11666 3 Skin 0.16 protein_coding synonymous_variant LOW 162C>T Phe54Phe
M0013803 HFGKLEFM_00013 11672 3 Skin 0.16 protein_coding synonymous_variant LOW 156C>T Gly52Gly
M0013804 HFGKLEFM_00013 11690 3 Skin 0.16 protein_coding synonymous_variant LOW 138C>G Ser46Ser
M0013805 HFGKLEFM_00013 11696 3 Skin 0.16 protein_coding synonymous_variant LOW 132G>A Val44Val
M0013806 HFGKLEFM_00013 11697 3 Skin 0.16 protein_coding missense_variant MODERATE 131T>G Val44Gly
M0013807 HFGKLEFM_00013 11699 3 Skin 0.16 protein_coding synonymous_variant LOW 129G>A Ala43Ala
M0013808 HFGKLEFM_00013 11704 3 Skin 0.16 protein_coding synonymous_variant LOW 124T>C Leu42Leu
M0013809 HFGKLEFM_00013 11705 3 Skin 0.16 protein_coding synonymous_variant LOW 123G>A Glu41Glu
M0013810 HFGKLEFM_00013 11740 3 Skin 0.16 protein_coding missense_variant MODERATE 88G>A Ala30Thr
M0013811 HFGKLEFM_00013 11741 3 Skin 0.16 protein_coding synonymous_variant LOW 87T>C Phe29Phe
M0013812 HFGKLEFM_00013 11747 3 Skin 0.16 protein_coding synonymous_variant LOW 81T>G Thr27Thr
M0013813 HFGKLEFM_00013 11766 3 Skin 0.16 protein_coding missense_variant MODERATE 62C>A Thr21Asn
M0013814 HFGKLEFM_00007 5818 3 Skin 0.16 protein_coding synonymous_variant LOW 459T>G Gly153Gly
M0013815 HFGKLEFM_00007 5819 3 Skin 0.16 protein_coding missense_variant MODERATE 460C>T His154Tyr
M0013816 HFGKLEFM_00007 5833 3 Skin 0.16 protein_coding synonymous_variant LOW 474G>A Ser158Ser
M0013817 HFGKLEFM_00006 5147 4 Skin 0.21 protein_coding synonymous_variant LOW 174G>A Pro58Pro
M0013818 HFGKLEFM_00006 5172 4 Skin 0.21 protein_coding missense_variant MODERATE 199G>A Ala67Thr
M0013819 HFGKLEFM_00007 5410 3 Skin 0.16 protein_coding synonymous_variant LOW 51C>T Arg17Arg
M0013820 HFGKLEFM_00005 4863 3 Skin 0.16 protein_coding synonymous_variant LOW 912A>G Glu304Glu
M0013821 HFGKLEFM_00005 4864 3 Skin 0.16 protein_coding missense_variant MODERATE 913G>T Ala305Ser
M0013822 HFGKLEFM_00005 4866 3 Skin 0.16 protein_coding synonymous_variant LOW 915G>C Ala305Ala
M0013823 HFGKLEFM_00006 5210 3 Skin 0.16 protein_coding synonymous_variant LOW 237C>T Ser79Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term