Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1749
  Reference Plasmid   1111525849644360_bin.3__k141_20632
  Reference Plasmid Size   7901
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0014474 AKHCMLII_00001 1010 18 Skin 0.24 protein_coding synonymous_variant LOW 45T>C Cys15Cys
M0014475 AKHCMLII_00001 1016 18 Skin 0.24 protein_coding synonymous_variant LOW 51T>C Leu17Leu
M0014476 AKHCMLII_00001 1019 18 Skin 0.24 protein_coding synonymous_variant LOW 54T>C Ala18Ala
M0014477 AKHCMLII_00001 1022 18 Skin 0.24 protein_coding synonymous_variant LOW 57C>T Ala19Ala
M0014478 AKHCMLII_00001 1091 19 Skin 0.25 protein_coding synonymous_variant LOW 126G>A Thr42Thr
M0014479 AKHCMLII_00001 1442 15 Skin 0.20 protein_coding synonymous_variant LOW 477T>C Asn159Asn
M0014480 AKHCMLII_00004 5206 10 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -52T>G None
M0014481 AKHCMLII_00004 5942 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -788A>G None
M0014482 AKHCMLII_00004 5949 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -795A>G None
M0014483 AKHCMLII_00004 4915 5 Skin 0.07 protein_coding synonymous_variant LOW 240T>C Phe80Phe
M0014484 AKHCMLII_00004 4957 8 Skin 0.11 protein_coding synonymous_variant LOW 198T>C Gly66Gly
M0014485 AKHCMLII_00004 4981 6 Skin 0.08 protein_coding synonymous_variant LOW 174T>G Gly58Gly
M0014486 AKHCMLII_00004 5014 7 Skin 0.09 protein_coding synonymous_variant LOW 141C>T Leu47Leu
M0014487 AKHCMLII_00004 5020 7 Skin 0.09 protein_coding synonymous_variant LOW 135C>T Phe45Phe
M0014488 AKHCMLII_00004 5062 4 Skin 0.05 protein_coding synonymous_variant LOW 93G>A Pro31Pro
M0014489 AKHCMLII_00004 5242 10 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -88G>A None
M0014490 AKHCMLII_00004 5265 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -111C>T None
M0014491 AKHCMLII_00004 5270 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -116C>T None
M0014492 AKHCMLII_00004 5271 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -117A>G None
M0014493 AKHCMLII_00004 5282 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -128T>C None
M0014494 AKHCMLII_00004 5290 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -136G>A None
M0014495 AKHCMLII_00004 5295 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -141G>C None
M0014496 AKHCMLII_00004 5302 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -148A>T None
M0014497 AKHCMLII_00004 5322 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -168T>C None
M0014498 AKHCMLII_00004 5337 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -183T>C None
M0014499 AKHCMLII_00004 5364 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -210G>C None
M0014500 AKHCMLII_00004 5400 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -246C>G None
M0014501 AKHCMLII_00004 5409 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -255T>C None
M0014502 AKHCMLII_00004 5411 9 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -257C>T None
M0014503 AKHCMLII_00005 5426 9 Skin 0.12 protein_coding splice_region_variant&stop_retained_variant LOW 410G>A Ter137Ter
M0014504 AKHCMLII_00005 5479 7 Skin 0.09 protein_coding missense_variant MODERATE 357A>C Glu119Asp
M0014505 AKHCMLII_00005 5521 11 Skin 0.14 protein_coding synonymous_variant LOW 315G>A Glu105Glu
M0014506 AKHCMLII_00005 5609 5 Skin 0.07 protein_coding missense_variant MODERATE 227T>G Val76Gly
M0014507 AKHCMLII_00005 5610 5 Skin 0.07 protein_coding missense_variant MODERATE 226G>C Val76Leu
M0014508 AKHCMLII_00005 5611 5 Skin 0.07 protein_coding synonymous_variant LOW 225T>C Asp75Asp
M0014509 AKHCMLII_00005 5623 5 Skin 0.07 protein_coding synonymous_variant LOW 213G>A Glu71Glu
M0014510 AKHCMLII_00005 5627 5 Skin 0.07 protein_coding missense_variant MODERATE 209G>A Ser70Asn
M0014511 AKHCMLII_00005 5628 5 Skin 0.07 protein_coding missense_variant MODERATE 208A>G Ser70Gly
M0014512 AKHCMLII_00005 5638 5 Skin 0.07 protein_coding synonymous_variant LOW 198C>T Cys66Cys
M0014513 AKHCMLII_00005 5641 5 Skin 0.07 protein_coding synonymous_variant LOW 195G>A Leu65Leu
M0014514 AKHCMLII_00005 5643 5 Skin 0.07 protein_coding synonymous_variant LOW 193T>C Leu65Leu
M0014515 AKHCMLII_00005 5644 5 Skin 0.07 protein_coding synonymous_variant LOW 192C>G Arg64Arg
M0014516 AKHCMLII_00005 5647 5 Skin 0.07 protein_coding missense_variant MODERATE 189G>T Glu63Asp
M0014517 AKHCMLII_00005 5650 5 Skin 0.07 protein_coding synonymous_variant LOW 186T>C Gly62Gly
M0014518 AKHCMLII_00005 5687 10 Skin 0.13 protein_coding missense_variant MODERATE 149C>T Ala50Val
M0014519 AKHCMLII_00005 5701 10 Skin 0.13 protein_coding synonymous_variant LOW 135A>T Thr45Thr
M0014520 AKHCMLII_00005 5703 10 Skin 0.13 protein_coding missense_variant MODERATE 133A>G Thr45Ala
M0014521 AKHCMLII_00005 5731 10 Skin 0.13 protein_coding synonymous_variant LOW 105G>A Val35Val
M0014522 AKHCMLII_00004 6197 12 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1043C>G None
M0014523 AKHCMLII_00004 6200 12 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1046T>C None
M0014524 AKHCMLII_00004 6216 12 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1062C>T None
M0014525 AKHCMLII_00006 6309 11 Skin 0.14 protein_coding synonymous_variant LOW 1506T>C Tyr502Tyr
M0014526 AKHCMLII_00006 6777 7 Skin 0.09 protein_coding synonymous_variant LOW 1038T>G Ala346Ala
M0014527 AKHCMLII_00006 6846 9 Skin 0.12 protein_coding synonymous_variant LOW 969A>G Thr323Thr
M0014528 AKHCMLII_00006 7017 8 Skin 0.11 protein_coding synonymous_variant LOW 798T>C Asn266Asn
M0014529 AKHCMLII_00006 7050 8 Skin 0.11 protein_coding synonymous_variant LOW 765T>G Pro255Pro
M0014530 AKHCMLII_00006 7101 5 Skin 0.07 protein_coding synonymous_variant LOW 714C>T His238His
M0014531 AKHCMLII_00006 7200 9 Skin 0.12 protein_coding synonymous_variant LOW 615A>C Arg205Arg
M0014532 AKHCMLII_00006 7203 9 Skin 0.12 protein_coding synonymous_variant LOW 612T>C Gly204Gly
M0014533 AKHCMLII_00006 7227 9 Skin 0.12 protein_coding synonymous_variant LOW 588C>G Ala196Ala
M0014534 AKHCMLII_00006 7245 9 Skin 0.12 protein_coding synonymous_variant LOW 570T>C Phe190Phe
M0014535 AKHCMLII_00001 1289 12 Skin 0.16 protein_coding synonymous_variant LOW 324T>C Asp108Asp
M0014536 AKHCMLII_00001 1487 17 Skin 0.22 protein_coding synonymous_variant LOW 522A>G Glu174Glu
M0014537 AKHCMLII_00001 1496 17 Skin 0.22 protein_coding synonymous_variant LOW 531C>T Asp177Asp
M0014538 AKHCMLII_00001 1632 20 Skin 0.26 protein_coding missense_variant MODERATE 667G>A Gly223Ser
M0014539 AKHCMLII_00001 1633 20 Skin 0.26 protein_coding missense_variant MODERATE 668G>A Gly223Asp
M0014540 AKHCMLII_00001 1889 8 Skin 0.11 protein_coding synonymous_variant LOW 924T>C Thr308Thr
M0014541 AKHCMLII_00001 1955 9 Skin 0.12 protein_coding synonymous_variant LOW 990G>A Gln330Gln
M0014542 AKHCMLII_00001 1973 9 Skin 0.12 protein_coding synonymous_variant LOW 1008C>T Gly336Gly
M0014543 AKHCMLII_00001 2036 11 Skin 0.14 protein_coding synonymous_variant LOW 1071C>G Arg357Arg
M0014544 AKHCMLII_00001 2060 12 Skin 0.16 protein_coding synonymous_variant LOW 1095A>G Glu365Glu
M0014545 AKHCMLII_00001 2105 6 Skin 0.08 protein_coding synonymous_variant LOW 1140A>G Ser380Ser
M0014546 AKHCMLII_00002 2259 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -116A>C None
M0014547 AKHCMLII_00002 2264 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -111G>A None
M0014548 AKHCMLII_00002 2266 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -109C>T None
M0014549 AKHCMLII_00002 2283 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -92A>G None
M0014550 AKHCMLII_00002 2291 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -84G>A None
M0014551 AKHCMLII_00002 2295 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -80C>G None
M0014552 AKHCMLII_00001 198 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -768T>C None
M0014553 AKHCMLII_00001 246 8 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -720A>G None
M0014554 AKHCMLII_00001 372 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -594C>G None
M0014555 AKHCMLII_00001 375 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -591G>C None
M0014556 AKHCMLII_00001 393 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -573C>T None
M0014557 AKHCMLII_00001 399 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -567A>G None
M0014558 AKHCMLII_00006 6648 9 Skin 0.12 protein_coding synonymous_variant LOW 1167C>G Pro389Pro
M0014559 AKHCMLII_00006 6701 4 Skin 0.05 protein_coding missense_variant MODERATE 1114A>T Thr372Ser
M0014560 AKHCMLII_00006 7626 4 Skin 0.05 protein_coding synonymous_variant LOW 189T>C Ala63Ala
M0014561 AKHCMLII_00001 1685 19 Skin 0.25 protein_coding synonymous_variant LOW 720G>A Glu240Glu
M0014562 AKHCMLII_00001 1707 19 Skin 0.25 protein_coding missense_variant MODERATE 742C>G Gln248Glu
M0014563 AKHCMLII_00001 1715 21 Skin 0.28 protein_coding synonymous_variant LOW 750A>G Gln250Gln
M0014564 AKHCMLII_00001 1718 19 Skin 0.25 protein_coding synonymous_variant LOW 753G>A Lys251Lys
M0014565 AKHCMLII_00001 1721 19 Skin 0.25 protein_coding synonymous_variant LOW 756T>C Gly252Gly
M0014566 AKHCMLII_00001 1811 15 Skin 0.20 protein_coding synonymous_variant LOW 846C>T Gly282Gly
M0014567 AKHCMLII_00001 1820 3 Skin 0.04 protein_coding synonymous_variant LOW 855G>T Gly285Gly
M0014568 AKHCMLII_00001 1835 15 Skin 0.20 protein_coding synonymous_variant LOW 870T>C Gly290Gly
M0014569 AKHCMLII_00001 1350 14 Skin 0.18 protein_coding missense_variant MODERATE 385C>A His129Asn
M0014570 AKHCMLII_00001 1356 14 Skin 0.18 protein_coding missense_variant MODERATE 391A>G Ile131Val
M0014571 AKHCMLII_00001 1370 14 Skin 0.18 protein_coding synonymous_variant LOW 405G>C Leu135Leu
M0014572 AKHCMLII_00001 1373 14 Skin 0.18 protein_coding synonymous_variant LOW 408T>C Ile136Ile
M0014573 AKHCMLII_00001 1376 14 Skin 0.18 protein_coding synonymous_variant LOW 411A>G Pro137Pro
M0014574 AKHCMLII_00002 2521 4 Skin 0.05 protein_coding synonymous_variant LOW 147C>G Ala49Ala
M0014575 AKHCMLII_00002 2541 5 Skin 0.07 protein_coding missense_variant MODERATE 167G>A Ser56Asn
M0014576 AKHCMLII_00002 2545 6 Skin 0.08 protein_coding synonymous_variant LOW 171T>C Gly57Gly
M0014577 AKHCMLII_00002 2554 5 Skin 0.07 protein_coding synonymous_variant LOW 180G>A Gln60Gln
M0014578 AKHCMLII_00002 2564 5 Skin 0.07 protein_coding missense_variant MODERATE 190C>G Gln64Glu
M0014579 AKHCMLII_00002 2569 5 Skin 0.07 protein_coding synonymous_variant LOW 195G>C Pro65Pro
M0014580 AKHCMLII_00002 2570 5 Skin 0.07 protein_coding synonymous_variant LOW 196C>T Leu66Leu
M0014581 AKHCMLII_00002 2578 5 Skin 0.07 protein_coding synonymous_variant LOW 204G>A Ala68Ala
M0014582 AKHCMLII_00002 2588 5 Skin 0.07 protein_coding missense_variant MODERATE 214G>A Gly72Ser
M0014583 AKHCMLII_00002 2593 5 Skin 0.07 protein_coding synonymous_variant LOW 219T>C Asn73Asn
M0014584 AKHCMLII_00002 2602 5 Skin 0.07 protein_coding synonymous_variant LOW 228C>T Ile76Ile
M0014585 AKHCMLII_00002 2614 5 Skin 0.07 protein_coding synonymous_variant LOW 240C>A Ala80Ala
M0014586 AKHCMLII_00002 2632 5 Skin 0.07 protein_coding synonymous_variant LOW 258A>G Glu86Glu
M0014587 AKHCMLII_00002 2635 5 Skin 0.07 protein_coding synonymous_variant LOW 261C>T Thr87Thr
M0014588 AKHCMLII_00002 2734 6 Skin 0.08 protein_coding synonymous_variant LOW 360C>T Asn120Asn
M0014589 AKHCMLII_00002 2821 3 Skin 0.04 protein_coding synonymous_variant LOW 447T>C Gly149Gly
M0014590 AKHCMLII_00002 2827 3 Skin 0.04 protein_coding synonymous_variant LOW 453C>T Ser151Ser
M0014591 AKHCMLII_00002 2851 3 Skin 0.04 protein_coding synonymous_variant LOW 477C>T Asp159Asp
M0014592 AKHCMLII_00002 2863 3 Skin 0.04 protein_coding synonymous_variant LOW 489G>C Pro163Pro
M0014593 AKHCMLII_00002 2869 3 Skin 0.04 protein_coding synonymous_variant LOW 495C>T His165His
M0014594 AKHCMLII_00002 2872 3 Skin 0.04 protein_coding synonymous_variant LOW 498G>A Pro166Pro
M0014595 AKHCMLII_00002 2887 3 Skin 0.04 protein_coding synonymous_variant LOW 513T>C Tyr171Tyr
M0014596 AKHCMLII_00002 2923 4 Skin 0.05 protein_coding synonymous_variant LOW 549C>G Gly183Gly
M0014597 AKHCMLII_00002 2932 4 Skin 0.05 protein_coding synonymous_variant LOW 558T>C Val186Val
M0014598 AKHCMLII_00002 2938 4 Skin 0.05 protein_coding synonymous_variant LOW 564G>A Gln188Gln
M0014599 AKHCMLII_00002 2941 4 Skin 0.05 protein_coding synonymous_variant LOW 567C>T His189His
M0014600 AKHCMLII_00002 2977 3 Skin 0.04 protein_coding synonymous_variant LOW 603G>A Glu201Glu
M0014601 AKHCMLII_00002 2989 3 Skin 0.04 protein_coding synonymous_variant LOW 615T>C Ile205Ile
M0014602 AKHCMLII_00002 3022 3 Skin 0.04 protein_coding synonymous_variant LOW 648T>C Gly216Gly
M0014603 AKHCMLII_00002 3052 3 Skin 0.04 protein_coding synonymous_variant LOW 678C>T Ser226Ser
M0014604 AKHCMLII_00002 3061 3 Skin 0.04 protein_coding synonymous_variant LOW 687C>A Gly229Gly
M0014605 AKHCMLII_00002 3066 3 Skin 0.04 protein_coding missense_variant MODERATE 692C>A Thr231Asn
M0014606 AKHCMLII_00002 3082 3 Skin 0.04 protein_coding synonymous_variant LOW 708G>A Val236Val
M0014607 AKHCMLII_00001 312 8 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -654T>G None
M0014608 AKHCMLII_00001 316 8 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -650C>G None
M0014609 AKHCMLII_00006 6540 5 Skin 0.07 protein_coding synonymous_variant LOW 1275T>C Ala425Ala
M0014610 AKHCMLII_00006 7440 4 Skin 0.05 protein_coding synonymous_variant LOW 375C>A Arg125Arg
M0014611 AKHCMLII_00001 2180 5 Skin 0.07 protein_coding synonymous_variant LOW 1215C>T Tyr405Tyr
M0014612 AKHCMLII_00001 2198 5 Skin 0.07 protein_coding synonymous_variant LOW 1233C>G Ser411Ser
M0014613 AKHCMLII_00001 2204 5 Skin 0.07 protein_coding synonymous_variant LOW 1239C>T Asp413Asp
M0014614 AKHCMLII_00001 2216 5 Skin 0.07 protein_coding synonymous_variant LOW 1251C>T Asp417Asp
M0014615 AKHCMLII_00001 2223 5 Skin 0.07 protein_coding missense_variant MODERATE 1258C>A Leu420Ile
M0014616 AKHCMLII_00001 2234 5 Skin 0.07 protein_coding synonymous_variant LOW 1269T>C Gly423Gly
M0014617 AKHCMLII_00001 1148 5 Skin 0.07 protein_coding synonymous_variant LOW 183T>C Arg61Arg
M0014618 AKHCMLII_00006 7299 3 Skin 0.04 protein_coding synonymous_variant LOW 516G>A Val172Val
M0014619 AKHCMLII_00004 6060 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -906T>C None
M0014620 AKHCMLII_00004 6083 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -929T>C None
M0014621 AKHCMLII_00004 6084 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -930G>A None
M0014622 AKHCMLII_00004 6087 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -933C>G None
M0014623 AKHCMLII_00004 6123 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -969T>C None
M0014624 AKHCMLII_00004 6126 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -972C>A None
M0014625 AKHCMLII_00004 6127 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -973G>A None
M0014626 AKHCMLII_00006 7743 5 Skin 0.07 protein_coding synonymous_variant LOW 72T>C Arg24Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term