Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1769
  Reference Plasmid   1111525849644360_bin.43__k141_277191
  Reference Plasmid Size   301703
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0014659 CDLCGLKG_00244 256993 3 Skin 0.27 protein_coding synonymous_variant LOW 399C>T Phe133Phe
M0014660 CDLCGLKG_00244 256995 3 Skin 0.27 protein_coding missense_variant MODERATE 401G>C Gly134Ala
M0014661 CDLCGLKG_00246 260153 3 Skin 0.27 protein_coding missense_variant MODERATE 1049A>G Gln350Arg
M0014662 CDLCGLKG_00246 260299 3 Skin 0.27 protein_coding synonymous_variant LOW 903C>G Val301Val
M0014663 CDLCGLKG_00246 260317 3 Skin 0.27 protein_coding synonymous_variant LOW 885C>G Val295Val
M0014664 CDLCGLKG_00246 260326 3 Skin 0.27 protein_coding synonymous_variant LOW 876T>C Arg292Arg
M0014665 CDLCGLKG_00246 260346 3 Skin 0.27 protein_coding missense_variant MODERATE 856T>G Ser286Ala
M0014666 CDLCGLKG_00246 260350 3 Skin 0.27 protein_coding synonymous_variant LOW 852C>G Leu284Leu
M0014667 CDLCGLKG_00246 260380 3 Skin 0.27 protein_coding synonymous_variant LOW 822C>G Gly274Gly
M0014668 CDLCGLKG_00246 260386 3 Skin 0.27 protein_coding synonymous_variant LOW 816C>G Pro272Pro
M0014669 CDLCGLKG_00246 260416 3 Skin 0.27 protein_coding synonymous_variant LOW 786A>G Gly262Gly
M0014670 CDLCGLKG_00246 260440 3 Skin 0.27 protein_coding synonymous_variant LOW 762T>C Asn254Asn
M0014671 CDLCGLKG_00246 260527 3 Skin 0.27 protein_coding synonymous_variant LOW 675T>C Ile225Ile
M0014672 CDLCGLKG_00246 260542 3 Skin 0.27 protein_coding synonymous_variant LOW 660C>T Gly220Gly
M0014673 CDLCGLKG_00246 260546 3 Skin 0.27 protein_coding missense_variant MODERATE 656G>A Gly219Asp
M0014674 CDLCGLKG_00246 260596 3 Skin 0.27 protein_coding synonymous_variant LOW 606A>G Arg202Arg
M0014675 CDLCGLKG_00246 260608 3 Skin 0.27 protein_coding synonymous_variant LOW 594T>C Ser198Ser
M0014676 CDLCGLKG_00246 260622 3 Skin 0.27 protein_coding missense_variant MODERATE 580T>C Phe194Leu
M0014677 CDLCGLKG_00246 260653 3 Skin 0.27 protein_coding synonymous_variant LOW 549A>G Glu183Glu
M0014678 CDLCGLKG_00246 260698 3 Skin 0.27 protein_coding synonymous_variant LOW 504G>C Gly168Gly
M0014679 CDLCGLKG_00246 260701 3 Skin 0.27 protein_coding synonymous_variant LOW 501G>C Val167Val
M0014680 CDLCGLKG_00246 260752 3 Skin 0.27 protein_coding synonymous_variant LOW 450G>C Arg150Arg
M0014681 CDLCGLKG_00246 260992 3 Skin 0.27 protein_coding synonymous_variant LOW 210T>C Leu70Leu
M0014682 CDLCGLKG_00246 261043 3 Skin 0.27 protein_coding synonymous_variant LOW 159C>T Gly53Gly
M0014683 CDLCGLKG_00246 261052 3 Skin 0.27 protein_coding synonymous_variant LOW 150T>C Gly50Gly
M0014684 CDLCGLKG_00243 261276 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4801G>C None
M0014685 CDLCGLKG_00243 261307 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4832T>C None
M0014686 CDLCGLKG_00243 261397 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4922T>C None
M0014687 CDLCGLKG_00243 261461 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4986A>T None
M0014688 CDLCGLKG_00245 261479 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1434G>A None
M0014689 CDLCGLKG_00245 261509 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1464T>C None
M0014690 CDLCGLKG_00245 261512 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1467A>G None
M0014691 CDLCGLKG_00247 261549 3 Skin 0.27 protein_coding missense_variant MODERATE 11C>T Pro4Leu
M0014692 CDLCGLKG_00247 261558 3 Skin 0.27 protein_coding missense_variant MODERATE 20T>C Val7Ala
M0014693 CDLCGLKG_00247 261592 3 Skin 0.27 protein_coding synonymous_variant LOW 54C>T Ile18Ile
M0014694 CDLCGLKG_00247 261654 3 Skin 0.27 protein_coding missense_variant MODERATE 116A>G Glu39Gly
M0014695 CDLCGLKG_00247 261721 3 Skin 0.27 protein_coding synonymous_variant LOW 183G>C Val61Val
M0014696 CDLCGLKG_00247 261733 3 Skin 0.27 protein_coding synonymous_variant LOW 195G>A Ala65Ala
M0014697 CDLCGLKG_00247 261784 3 Skin 0.27 protein_coding synonymous_variant LOW 246G>C Gly82Gly
M0014698 CDLCGLKG_00247 261841 3 Skin 0.27 protein_coding synonymous_variant LOW 303A>G Gln101Gln
M0014699 CDLCGLKG_00247 262021 3 Skin 0.27 protein_coding synonymous_variant LOW 483G>C Pro161Pro
M0014700 CDLCGLKG_00247 262036 3 Skin 0.27 protein_coding synonymous_variant LOW 498C>G Gly166Gly
M0014701 CDLCGLKG_00247 262039 3 Skin 0.27 protein_coding synonymous_variant LOW 501T>C Ala167Ala
M0014702 CDLCGLKG_00247 262047 3 Skin 0.27 protein_coding missense_variant MODERATE 509T>C Val170Ala
M0014703 CDLCGLKG_00247 262048 3 Skin 0.27 protein_coding synonymous_variant LOW 510G>C Val170Val
M0014704 CDLCGLKG_00247 262064 3 Skin 0.27 protein_coding missense_variant MODERATE 526A>G Ile176Val
M0014705 CDLCGLKG_00247 262130 3 Skin 0.27 protein_coding missense_variant MODERATE 592G>A Ala198Thr
M0014706 CDLCGLKG_00247 262155 3 Skin 0.27 protein_coding missense_variant MODERATE 617T>C Val206Ala
M0014707 CDLCGLKG_00247 262213 3 Skin 0.27 protein_coding synonymous_variant LOW 675T>G Ala225Ala
M0014708 CDLCGLKG_00247 262267 3 Skin 0.27 protein_coding synonymous_variant LOW 729A>G Pro243Pro
M0014709 CDLCGLKG_00247 262300 3 Skin 0.27 protein_coding synonymous_variant LOW 762C>T Gly254Gly
M0014710 CDLCGLKG_00247 262312 3 Skin 0.27 protein_coding synonymous_variant LOW 774C>T Gly258Gly
M0014711 CDLCGLKG_00247 262327 3 Skin 0.27 protein_coding synonymous_variant LOW 789T>C Val263Val
M0014712 CDLCGLKG_00247 262336 3 Skin 0.27 protein_coding synonymous_variant LOW 798C>A Ala266Ala
M0014713 CDLCGLKG_00247 262339 3 Skin 0.27 protein_coding synonymous_variant LOW 801G>C Gly267Gly
M0014714 CDLCGLKG_00248 263357 3 Skin 0.27 protein_coding synonymous_variant LOW 573G>A Arg191Arg
M0014715 CDLCGLKG_00248 263366 3 Skin 0.27 protein_coding synonymous_variant LOW 564G>C Ala188Ala
M0014716 CDLCGLKG_00248 263378 3 Skin 0.27 protein_coding synonymous_variant LOW 552C>T Asp184Asp
M0014717 CDLCGLKG_00248 263399 3 Skin 0.27 protein_coding synonymous_variant LOW 531T>C Tyr177Tyr
M0014718 CDLCGLKG_00248 263417 3 Skin 0.27 protein_coding synonymous_variant LOW 513G>A Gly171Gly
M0014719 CDLCGLKG_00248 263465 3 Skin 0.27 protein_coding synonymous_variant LOW 465G>A Glu155Glu
M0014720 CDLCGLKG_00248 263480 3 Skin 0.27 protein_coding synonymous_variant LOW 450T>G Leu150Leu
M0014721 CDLCGLKG_00248 263645 4 Skin 0.36 protein_coding synonymous_variant LOW 285A>G Gln95Gln
M0014722 CDLCGLKG_00248 263669 4 Skin 0.36 protein_coding synonymous_variant LOW 261T>C Arg87Arg
M0014723 CDLCGLKG_00248 263696 4 Skin 0.36 protein_coding synonymous_variant LOW 234A>G Arg78Arg
M0014724 CDLCGLKG_00248 263705 4 Skin 0.36 protein_coding synonymous_variant LOW 225T>C Pro75Pro
M0014725 CDLCGLKG_00248 263810 4 Skin 0.36 protein_coding synonymous_variant LOW 120C>G Arg40Arg
M0014726 CDLCGLKG_00249 264115 4 Skin 0.36 protein_coding synonymous_variant LOW 720A>C Gly240Gly
M0014727 CDLCGLKG_00249 264133 4 Skin 0.36 protein_coding synonymous_variant LOW 702G>A Ala234Ala
M0014728 CDLCGLKG_00249 264367 3 Skin 0.27 protein_coding synonymous_variant LOW 468T>C Arg156Arg
M0014729 CDLCGLKG_00249 264382 3 Skin 0.27 protein_coding synonymous_variant LOW 453A>G Ala151Ala
M0014730 CDLCGLKG_00249 264457 3 Skin 0.27 protein_coding synonymous_variant LOW 378T>C Asp126Asp
M0014731 CDLCGLKG_00249 264502 3 Skin 0.27 protein_coding synonymous_variant LOW 333T>C Gly111Gly
M0014732 CDLCGLKG_00249 264553 3 Skin 0.27 protein_coding synonymous_variant LOW 282G>C Gly94Gly
M0014733 CDLCGLKG_00250 265073 3 Skin 0.27 protein_coding synonymous_variant LOW 1050T>C Asp350Asp
M0014734 CDLCGLKG_00250 265181 3 Skin 0.27 protein_coding synonymous_variant LOW 942T>G Leu314Leu
M0014735 CDLCGLKG_00250 265184 3 Skin 0.27 protein_coding synonymous_variant LOW 939T>G Ser313Ser
M0014736 CDLCGLKG_00250 265199 3 Skin 0.27 protein_coding synonymous_variant LOW 924T>G Ser308Ser
M0014737 CDLCGLKG_00250 265208 3 Skin 0.27 protein_coding synonymous_variant LOW 915C>G Arg305Arg
M0014738 CDLCGLKG_00250 265304 3 Skin 0.27 protein_coding synonymous_variant LOW 819T>C Leu273Leu
M0014739 CDLCGLKG_00250 265316 3 Skin 0.27 protein_coding synonymous_variant LOW 807G>A Glu269Glu
M0014740 CDLCGLKG_00250 265391 3 Skin 0.27 protein_coding synonymous_variant LOW 732T>C Gly244Gly
M0014741 CDLCGLKG_00250 265400 3 Skin 0.27 protein_coding synonymous_variant LOW 723A>T Ser241Ser
M0014742 CDLCGLKG_00250 265415 3 Skin 0.27 protein_coding synonymous_variant LOW 708T>C Leu236Leu
M0014743 CDLCGLKG_00250 265430 3 Skin 0.27 protein_coding synonymous_variant LOW 693T>G Val231Val
M0014744 CDLCGLKG_00250 265439 3 Skin 0.27 protein_coding synonymous_variant LOW 684G>C Gly228Gly
M0014745 CDLCGLKG_00250 265450 3 Skin 0.27 protein_coding synonymous_variant LOW 673T>C Leu225Leu
M0014746 CDLCGLKG_00250 265523 3 Skin 0.27 protein_coding synonymous_variant LOW 600T>C Ile200Ile
M0014747 CDLCGLKG_00250 265781 3 Skin 0.27 protein_coding synonymous_variant LOW 342A>G Thr114Thr
M0014748 CDLCGLKG_00250 265811 3 Skin 0.27 protein_coding synonymous_variant LOW 312T>C Phe104Phe
M0014749 CDLCGLKG_00250 265874 3 Skin 0.27 protein_coding synonymous_variant LOW 249A>G Gly83Gly
M0014750 CDLCGLKG_00250 265930 3 Skin 0.27 protein_coding missense_variant MODERATE 193A>T Thr65Ser
M0014751 CDLCGLKG_00250 266051 3 Skin 0.27 protein_coding synonymous_variant LOW 72C>G Pro24Pro
M0014752 CDLCGLKG_00251 266150 3 Skin 0.27 protein_coding synonymous_variant LOW 1089C>T Arg363Arg
M0014753 CDLCGLKG_00251 266279 3 Skin 0.27 protein_coding synonymous_variant LOW 960A>G Lys320Lys
M0014754 CDLCGLKG_00251 266337 3 Skin 0.27 protein_coding missense_variant MODERATE 902C>A Ala301Asp
M0014755 CDLCGLKG_00251 266339 3 Skin 0.27 protein_coding synonymous_variant LOW 900A>G Thr300Thr
M0014756 CDLCGLKG_00251 266341 3 Skin 0.27 protein_coding missense_variant MODERATE 898A>G Thr300Ala
M0014757 CDLCGLKG_00251 266375 3 Skin 0.27 protein_coding synonymous_variant LOW 864T>C Ala288Ala
M0014758 CDLCGLKG_00251 266435 3 Skin 0.27 protein_coding synonymous_variant LOW 804C>T Phe268Phe
M0014759 CDLCGLKG_00251 266438 3 Skin 0.27 protein_coding synonymous_variant LOW 801T>C Ser267Ser
M0014760 CDLCGLKG_00251 266501 3 Skin 0.27 protein_coding synonymous_variant LOW 738C>G Arg246Arg
M0014761 CDLCGLKG_00251 266522 3 Skin 0.27 protein_coding synonymous_variant LOW 717A>G Glu239Glu
M0014762 CDLCGLKG_00251 266579 3 Skin 0.27 protein_coding synonymous_variant LOW 660T>C Asp220Asp
M0014763 CDLCGLKG_00251 266669 3 Skin 0.27 protein_coding synonymous_variant LOW 570T>C Val190Val
M0014764 CDLCGLKG_00251 266672 3 Skin 0.27 protein_coding synonymous_variant LOW 567G>A Glu189Glu
M0014765 CDLCGLKG_00251 266683 3 Skin 0.27 protein_coding missense_variant MODERATE 556T>G Ser186Ala
M0014766 CDLCGLKG_00251 266686 3 Skin 0.27 protein_coding missense_variant MODERATE 553A>G Thr185Ala
M0014767 CDLCGLKG_00251 266727 3 Skin 0.27 protein_coding missense_variant MODERATE 512A>G His171Arg
M0014768 CDLCGLKG_00251 266753 3 Skin 0.27 protein_coding synonymous_variant LOW 486T>C Ala162Ala
M0014769 CDLCGLKG_00251 266757 3 Skin 0.27 protein_coding missense_variant MODERATE 482G>C Gly161Ala
M0014770 CDLCGLKG_00251 266777 3 Skin 0.27 protein_coding synonymous_variant LOW 462A>G Ala154Ala
M0014771 CDLCGLKG_00248 263510 3 Skin 0.27 protein_coding synonymous_variant LOW 420T>C Ile140Ile
M0014772 CDLCGLKG_00248 263600 3 Skin 0.27 protein_coding synonymous_variant LOW 330G>T Arg110Arg
M0014773 CDLCGLKG_00248 263663 3 Skin 0.27 protein_coding synonymous_variant LOW 267G>A Gly89Gly
M0014774 CDLCGLKG_00248 263867 3 Skin 0.27 protein_coding synonymous_variant LOW 63T>C Asp21Asp
M0014775 CDLCGLKG_00248 263873 3 Skin 0.27 protein_coding synonymous_variant LOW 57T>C Asp19Asp
M0014776 CDLCGLKG_00249 264034 3 Skin 0.27 protein_coding synonymous_variant LOW 801A>G Thr267Thr
M0014777 CDLCGLKG_00249 264211 3 Skin 0.27 protein_coding synonymous_variant LOW 624A>C Ala208Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
CDLCGLKG_00199 3.D.1.6.3 72.3 3.4e-191 2 434 0.9954 1.0647 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.1 The H+ or Na+-translocating NADH Dehydrogenase (NDH) Family