Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1770
  Reference Plasmid   1111525849644360_bin.5__k141_238479
  Reference Plasmid Size   15146
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0014778 HIAHKEGI_00003 4208 5 Skin 0.33 protein_coding synonymous_variant LOW 27C>T Phe9Phe
M0014779 HIAHKEGI_00003 4298 4 Skin 0.27 protein_coding synonymous_variant LOW 117T>C Gly39Gly
M0014780 HIAHKEGI_00003 4324 4 Skin 0.27 protein_coding missense_variant MODERATE 143T>C Ile48Thr
M0014781 HIAHKEGI_00003 4715 4 Skin 0.27 protein_coding synonymous_variant LOW 534A>G Val178Val
M0014782 HIAHKEGI_00003 5018 3 Skin 0.20 protein_coding missense_variant MODERATE 837G>C Glu279Asp
M0014783 HIAHKEGI_00003 5159 3 Skin 0.20 protein_coding synonymous_variant LOW 978T>C Ile326Ile
M0014784 HIAHKEGI_00003 5162 3 Skin 0.20 protein_coding synonymous_variant LOW 981T>C Asn327Asn
M0014785 HIAHKEGI_00003 5165 3 Skin 0.20 protein_coding synonymous_variant LOW 984G>C Thr328Thr
M0014786 HIAHKEGI_00003 5192 3 Skin 0.20 protein_coding synonymous_variant LOW 1011A>G Ala337Ala
M0014787 HIAHKEGI_00003 5273 3 Skin 0.20 protein_coding synonymous_variant LOW 1092A>G Gly364Gly
M0014788 HIAHKEGI_00003 5510 3 Skin 0.20 protein_coding synonymous_variant LOW 1329T>C Gly443Gly
M0014789 HIAHKEGI_00003 7022 3 Skin 0.20 protein_coding synonymous_variant LOW 2841G>A Glu947Glu
M0014790 HIAHKEGI_00003 7316 3 Skin 0.20 protein_coding synonymous_variant LOW 3135T>G Leu1045Leu
M0014791 HIAHKEGI_00003 7328 3 Skin 0.20 protein_coding synonymous_variant LOW 3147T>C Phe1049Phe
M0014792 HIAHKEGI_00003 7934 5 Skin 0.33 protein_coding synonymous_variant LOW 3753T>C Asp1251Asp
M0014793 HIAHKEGI_00003 8006 3 Skin 0.20 protein_coding synonymous_variant LOW 3825C>T Ile1275Ile
M0014794 HIAHKEGI_00003 8063 5 Skin 0.33 protein_coding synonymous_variant LOW 3882T>C Asp1294Asp
M0014795 HIAHKEGI_00003 8156 5 Skin 0.33 protein_coding synonymous_variant LOW 3975T>C Ala1325Ala
M0014796 HIAHKEGI_00003 8159 5 Skin 0.33 protein_coding synonymous_variant LOW 3978C>G Leu1326Leu
M0014797 HIAHKEGI_00003 8330 6 Skin 0.40 protein_coding synonymous_variant LOW 4149G>A Lys1383Lys
M0014798 HIAHKEGI_00003 8408 5 Skin 0.33 protein_coding synonymous_variant LOW 4227T>C Thr1409Thr
M0014799 HIAHKEGI_00003 8477 3 Skin 0.20 protein_coding synonymous_variant LOW 4296T>G Leu1432Leu
M0014800 HIAHKEGI_00003 8591 3 Skin 0.20 protein_coding synonymous_variant LOW 4410C>T Ala1470Ala
M0014801 HIAHKEGI_00003 8783 4 Skin 0.27 protein_coding synonymous_variant LOW 4602T>G Val1534Val
M0014802 HIAHKEGI_00003 8912 5 Skin 0.33 protein_coding synonymous_variant LOW 4731G>A Val1577Val
M0014803 HIAHKEGI_00003 9005 4 Skin 0.27 protein_coding synonymous_variant LOW 4824G>A Ser1608Ser
M0014804 HIAHKEGI_00003 9104 4 Skin 0.27 protein_coding synonymous_variant LOW 4923G>C Ala1641Ala
M0014805 HIAHKEGI_00004 9806 6 Skin 0.40 protein_coding synonymous_variant LOW 676C>A Arg226Arg
M0014806 HIAHKEGI_00004 9856 4 Skin 0.27 protein_coding synonymous_variant LOW 726C>T Pro242Pro
M0014807 HIAHKEGI_00004 9862 3 Skin 0.20 protein_coding synonymous_variant LOW 732C>T Gly244Gly
M0014808 HIAHKEGI_00004 9871 6 Skin 0.40 protein_coding synonymous_variant LOW 741G>C Gly247Gly
M0014809 HIAHKEGI_00004 9872 6 Skin 0.40 protein_coding synonymous_variant LOW 742C>T Leu248Leu
M0014810 HIAHKEGI_00004 9880 3 Skin 0.20 protein_coding synonymous_variant LOW 750C>T His250His
M0014811 HIAHKEGI_00005 9981 6 Skin 0.40 protein_coding synonymous_variant LOW 18A>G Leu6Leu
M0014812 HIAHKEGI_00005 9990 3 Skin 0.20 protein_coding synonymous_variant LOW 27C>A Ala9Ala
M0014813 HIAHKEGI_00005 10044 4 Skin 0.27 protein_coding synonymous_variant LOW 81G>A Ala27Ala
M0014814 HIAHKEGI_00005 10242 5 Skin 0.33 protein_coding synonymous_variant LOW 279G>C Arg93Arg
M0014815 HIAHKEGI_00005 10347 5 Skin 0.33 protein_coding synonymous_variant LOW 384G>A Glu128Glu
M0014816 HIAHKEGI_00005 10377 3 Skin 0.20 protein_coding synonymous_variant LOW 414C>T Ala138Ala
M0014817 HIAHKEGI_00005 10389 6 Skin 0.40 protein_coding synonymous_variant LOW 426T>C Arg142Arg
M0014818 HIAHKEGI_00005 10603 4 Skin 0.27 protein_coding missense_variant MODERATE 640A>C Met214Leu
M0014819 HIAHKEGI_00005 10867 3 Skin 0.20 protein_coding synonymous_variant LOW 904C>T Leu302Leu
M0014820 HIAHKEGI_00005 10965 5 Skin 0.33 protein_coding missense_variant MODERATE 1002T>G Asp334Glu
M0014821 HIAHKEGI_00005 11089 7 Skin 0.47 protein_coding missense_variant MODERATE 1126C>G Leu376Val
M0014822 HIAHKEGI_00005 11170 5 Skin 0.33 protein_coding missense_variant MODERATE 1207C>G His403Asp
M0014823 HIAHKEGI_00005 11171 5 Skin 0.33 protein_coding missense_variant MODERATE 1208A>G His403Arg
M0014824 HIAHKEGI_00006 11592 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -155G>A None
M0014825 HIAHKEGI_00006 11602 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -145A>G None
M0014826 HIAHKEGI_00006 11729 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -18G>A None
M0014827 HIAHKEGI_00006 11764 5 Skin 0.33 protein_coding synonymous_variant LOW 18T>C Thr6Thr
M0014828 HIAHKEGI_00006 11800 5 Skin 0.33 protein_coding synonymous_variant LOW 54T>C Asn18Asn
M0014829 HIAHKEGI_00006 11803 3 Skin 0.20 protein_coding synonymous_variant LOW 57A>C Ala19Ala
M0014830 HIAHKEGI_00006 11806 3 Skin 0.20 protein_coding synonymous_variant LOW 60C>T Phe20Phe
M0014831 HIAHKEGI_00006 11809 3 Skin 0.20 protein_coding synonymous_variant LOW 63T>C Leu21Leu
M0014832 HIAHKEGI_00006 11827 5 Skin 0.33 protein_coding synonymous_variant LOW 81T>C Asp27Asp
M0014833 HIAHKEGI_00006 11935 3 Skin 0.20 protein_coding synonymous_variant LOW 189A>G Gln63Gln
M0014834 HIAHKEGI_00006 11951 5 Skin 0.33 protein_coding missense_variant MODERATE 205A>G Lys69Glu
M0014835 HIAHKEGI_00006 12065 4 Skin 0.27 protein_coding missense_variant MODERATE 319A>G Asn107Asp
M0014836 HIAHKEGI_00006 12155 5 Skin 0.33 protein_coding missense_variant MODERATE 409C>G Leu137Val
M0014837 HIAHKEGI_00006 12204 4 Skin 0.27 protein_coding missense_variant MODERATE 458C>T Thr153Ile
M0014838 HIAHKEGI_00006 12214 4 Skin 0.27 protein_coding synonymous_variant LOW 468C>T Val156Val
M0014839 HIAHKEGI_00006 12301 3 Skin 0.20 protein_coding synonymous_variant LOW 555A>G Thr185Thr
M0014840 HIAHKEGI_00006 12360 5 Skin 0.33 protein_coding missense_variant MODERATE 614T>C Leu205Pro
M0014841 HIAHKEGI_00006 12361 4 Skin 0.27 protein_coding synonymous_variant LOW 615G>A Leu205Leu
M0014842 HIAHKEGI_00006 12368 3 Skin 0.20 protein_coding missense_variant MODERATE 622C>T His208Tyr
M0014843 HIAHKEGI_00006 12382 5 Skin 0.33 protein_coding synonymous_variant LOW 636G>C Ala212Ala
M0014844 HIAHKEGI_00006 12436 5 Skin 0.33 protein_coding synonymous_variant LOW 690T>C Asn230Asn
M0014845 HIAHKEGI_00001 1804 3 Skin 0.20 protein_coding synonymous_variant LOW 141G>A Glu47Glu
M0014846 HIAHKEGI_00001 2363 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -419T>C None
M0014847 HIAHKEGI_00001 2382 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -438T>C None
M0014848 HIAHKEGI_00001 2551 6 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -607C>T None
M0014849 HIAHKEGI_00001 2701 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -757A>G None
M0014850 HIAHKEGI_00001 2712 6 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -768C>A None
M0014851 HIAHKEGI_00002 2945 7 Skin 0.47 protein_coding synonymous_variant LOW 774G>C Ala258Ala
M0014852 HIAHKEGI_00004 9622 4 Skin 0.27 protein_coding synonymous_variant LOW 492C>T Arg164Arg
M0014853 HIAHKEGI_00005 10125 3 Skin 0.20 protein_coding synonymous_variant LOW 162A>G Ala54Ala
M0014854 HIAHKEGI_00006 12022 3 Skin 0.20 protein_coding synonymous_variant LOW 276T>C Tyr92Tyr
M0014855 HIAHKEGI_00006 12133 3 Skin 0.20 protein_coding synonymous_variant LOW 387C>T Val129Val
M0014856 HIAHKEGI_00007 13060 3 Skin 0.20 protein_coding missense_variant MODERATE 640T>C Cys214Arg
M0014857 HIAHKEGI_00007 13134 3 Skin 0.20 protein_coding missense_variant MODERATE 566G>A Gly189Asp
M0014858 HIAHKEGI_00001 1067 5 Skin 0.33 protein_coding missense_variant MODERATE 878G>A Ser293Asn
M0014859 HIAHKEGI_00001 1258 5 Skin 0.33 protein_coding synonymous_variant LOW 687G>T Leu229Leu
M0014860 HIAHKEGI_00001 1430 5 Skin 0.33 protein_coding missense_variant MODERATE 515A>G Lys172Arg
M0014861 HIAHKEGI_00001 1458 5 Skin 0.33 protein_coding missense_variant MODERATE 487T>G Tyr163Asp
M0014862 HIAHKEGI_00001 1510 5 Skin 0.33 protein_coding missense_variant MODERATE 435T>A His145Gln
M0014863 HIAHKEGI_00001 1625 5 Skin 0.33 protein_coding missense_variant MODERATE 320T>C Val107Ala
M0014864 HIAHKEGI_00001 1951 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -7A>C None
M0014865 HIAHKEGI_00001 2616 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -672T>G None
M0014866 HIAHKEGI_00002 3064 4 Skin 0.27 protein_coding synonymous_variant LOW 655T>C Leu219Leu
M0014867 HIAHKEGI_00002 3389 4 Skin 0.27 protein_coding missense_variant MODERATE 330G>C Leu110Phe
M0014868 HIAHKEGI_00001 3720 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -1776T>G None
M0014869 HIAHKEGI_00001 3721 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -1777C>T None
M0014870 HIAHKEGI_00001 3722 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -1778A>G None
M0014871 HIAHKEGI_00001 3790 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -1846G>A None
M0014872 HIAHKEGI_00001 3820 6 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1876A>G None
M0014873 HIAHKEGI_00001 3824 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -1880T>C None
M0014874 HIAHKEGI_00001 3863 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -1919A>C None
M0014875 HIAHKEGI_00001 3864 6 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1920T>G None
M0014876 HIAHKEGI_00001 3945 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2001G>A None
M0014877 HIAHKEGI_00001 3957 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2013A>G None
M0014878 HIAHKEGI_00001 3966 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2022A>G None
M0014879 HIAHKEGI_00001 4079 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2135T>C None
M0014880 HIAHKEGI_00005 10578 3 Skin 0.20 protein_coding synonymous_variant LOW 615A>G Glu205Glu
M0014881 HIAHKEGI_00005 11400 4 Skin 0.27 protein_coding synonymous_variant LOW 1437C>G Ala479Ala
M0014882 HIAHKEGI_00005 10689 3 Skin 0.20 protein_coding missense_variant MODERATE 726C>A His242Gln
M0014883 HIAHKEGI_00005 10972 3 Skin 0.20 protein_coding missense_variant MODERATE 1009G>C Glu337Gln
M0014884 HIAHKEGI_00001 565 4 Skin 0.27 protein_coding synonymous_variant LOW 1380A>G Arg460Arg
M0014885 HIAHKEGI_00001 1552 3 Skin 0.20 protein_coding synonymous_variant LOW 393C>T Ser131Ser
M0014886 HIAHKEGI_00002 2870 4 Skin 0.27 protein_coding synonymous_variant LOW 849T>C Phe283Phe
M0014887 HIAHKEGI_00002 2873 4 Skin 0.27 protein_coding synonymous_variant LOW 846T>C Asp282Asp
M0014888 HIAHKEGI_00002 3713 4 Skin 0.27 protein_coding synonymous_variant LOW 6C>G Ser2Ser
M0014889 HIAHKEGI_00001 3774 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1830T>G None
M0014890 HIAHKEGI_00001 3784 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1840A>G None
M0014891 HIAHKEGI_00001 3794 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1850T>C None
M0014892 HIAHKEGI_00002 3206 3 Skin 0.20 protein_coding synonymous_variant LOW 513T>C Cys171Cys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term