Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1771
  Reference Plasmid   1111525849644360_bin.8__k141_197652
  Reference Plasmid Size   197534
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0014893 CEOJGJPB_00028 19090 6 Skin 0.11 protein_coding missense_variant MODERATE 620G>T Ser207Ile
M0014894 CEOJGJPB_00036 29892 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4791T>C None
M0014895 CEOJGJPB_00058 37097 4 Skin 0.07 protein_coding synonymous_variant LOW 450T>C Ile150Ile
M0014896 CEOJGJPB_00217 179531 3 Skin 0.05 protein_coding missense_variant MODERATE 45A>C Lys15Asn
M0014897 CEOJGJPB_00219 180212 3 Skin 0.05 protein_coding missense_variant MODERATE 691C>A Pro231Thr
M0014898 CEOJGJPB_00219 180218 3 Skin 0.05 protein_coding missense_variant MODERATE 685A>C Ile229Leu
M0014899 CEOJGJPB_00219 180222 3 Skin 0.05 protein_coding synonymous_variant LOW 681A>G Thr227Thr
M0014900 CEOJGJPB_00219 180248 3 Skin 0.05 protein_coding missense_variant MODERATE 655G>A Gly219Ser
M0014901 CEOJGJPB_00219 180283 3 Skin 0.05 protein_coding missense_variant MODERATE 620C>A Thr207Asn
M0014902 CEOJGJPB_00219 180308 3 Skin 0.05 protein_coding missense_variant MODERATE 595G>A Val199Ile
M0014903 CEOJGJPB_00219 180340 3 Skin 0.05 protein_coding missense_variant MODERATE 563C>T Pro188Leu
M0014904 CEOJGJPB_00219 180367 3 Skin 0.05 protein_coding missense_variant MODERATE 536T>C Phe179Ser
M0014905 CEOJGJPB_00219 180467 3 Skin 0.05 protein_coding missense_variant MODERATE 436C>T Pro146Ser
M0014906 CEOJGJPB_00219 180477 3 Skin 0.05 protein_coding synonymous_variant LOW 426T>C His142His
M0014907 CEOJGJPB_00219 180791 3 Skin 0.05 protein_coding missense_variant MODERATE 112G>C Gly38Arg
M0014908 CEOJGJPB_00220 181015 3 Skin 0.05 protein_coding stop_lost&splice_region_variant HIGH 214T>C Ter72Glnext*?
M0014909 CEOJGJPB_00220 181029 3 Skin 0.05 protein_coding missense_variant MODERATE 200G>T Arg67Leu
M0014910 CEOJGJPB_00220 181077 3 Skin 0.05 protein_coding missense_variant MODERATE 152C>T Thr51Met
M0014911 CEOJGJPB_00220 181121 3 Skin 0.05 protein_coding synonymous_variant LOW 108T>C His36His
M0014912 CEOJGJPB_00220 181134 3 Skin 0.05 protein_coding missense_variant MODERATE 95C>T Ala32Val
M0014913 CEOJGJPB_00220 181136 3 Skin 0.05 protein_coding synonymous_variant LOW 93A>G Glu31Glu
M0014914 CEOJGJPB_00220 181145 3 Skin 0.05 protein_coding missense_variant MODERATE 84G>C Lys28Asn
M0014915 CEOJGJPB_00220 181184 3 Skin 0.05 protein_coding synonymous_variant LOW 45G>A Ser15Ser
M0014916 CEOJGJPB_00220 181189 3 Skin 0.05 protein_coding missense_variant MODERATE 40T>C Ser14Pro
M0014917 CEOJGJPB_00213 181261 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4967T>C None
M0014918 CEOJGJPB_00214 181303 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4765T>C None
M0014919 CEOJGJPB_00214 181360 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4822A>G None
M0014920 CEOJGJPB_00214 181390 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4852C>T None
M0014921 CEOJGJPB_00214 181395 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4857T>C None
M0014922 CEOJGJPB_00221 181455 3 Skin 0.05 protein_coding synonymous_variant LOW 201A>G Lys67Lys
M0014923 CEOJGJPB_00221 181468 3 Skin 0.05 protein_coding missense_variant MODERATE 188T>C Val63Ala
M0014924 CEOJGJPB_00221 181472 3 Skin 0.05 protein_coding missense_variant MODERATE 184C>A Gln62Lys
M0014925 CEOJGJPB_00221 181486 3 Skin 0.05 protein_coding missense_variant MODERATE 170G>A Gly57Asp
M0014926 CEOJGJPB_00221 181563 3 Skin 0.05 protein_coding synonymous_variant LOW 93A>C Ile31Ile
M0014927 CEOJGJPB_00221 181575 3 Skin 0.05 protein_coding missense_variant MODERATE 81A>C Gln27His
M0014928 CEOJGJPB_00221 181615 3 Skin 0.05 protein_coding missense_variant MODERATE 41C>T Thr14Ile
M0014929 CEOJGJPB_00222 181670 3 Skin 0.05 protein_coding missense_variant MODERATE 218C>T Ala73Val
M0014930 CEOJGJPB_00215 183068 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4929C>A None
M0014931 CEOJGJPB_00224 183085 3 Skin 0.05 protein_coding synonymous_variant LOW 9G>A Ala3Ala
M0014932 CEOJGJPB_00224 183086 3 Skin 0.05 protein_coding missense_variant MODERATE 10T>C Phe4Leu
M0014933 CEOJGJPB_00224 183098 3 Skin 0.05 protein_coding missense_variant MODERATE 22A>G Thr8Ala
M0014934 CEOJGJPB_00224 183175 3 Skin 0.05 protein_coding synonymous_variant LOW 99A>G Gln33Gln
M0014935 CEOJGJPB_00224 183212 3 Skin 0.05 protein_coding missense_variant MODERATE 136T>G Cys46Gly
M0014936 CEOJGJPB_00224 183232 3 Skin 0.05 protein_coding synonymous_variant LOW 156C>T Asn52Asn
M0014937 CEOJGJPB_00224 183362 3 Skin 0.05 protein_coding missense_variant MODERATE 286G>A Val96Ile
M0014938 CEOJGJPB_00224 183389 3 Skin 0.05 protein_coding missense_variant MODERATE 313G>A Gly105Ser
M0014939 CEOJGJPB_00224 183417 3 Skin 0.05 protein_coding missense_variant MODERATE 341A>C His114Pro
M0014940 CEOJGJPB_00224 183433 3 Skin 0.05 protein_coding synonymous_variant LOW 357C>T Phe119Phe
M0014941 CEOJGJPB_00224 183458 3 Skin 0.05 protein_coding missense_variant MODERATE 382A>G Ile128Val
M0014942 CEOJGJPB_00224 183492 3 Skin 0.05 protein_coding stop_gained HIGH 416G>A Trp139*
M0014943 CEOJGJPB_00225 183548 3 Skin 0.05 protein_coding missense_variant MODERATE 14A>T Asp5Val
M0014944 CEOJGJPB_00225 183575 3 Skin 0.05 protein_coding stop_gained HIGH 41C>A Ser14*
M0014945 CEOJGJPB_00225 183821 3 Skin 0.05 protein_coding missense_variant MODERATE 287G>A Gly96Glu
M0014946 CEOJGJPB_00217 183891 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4316A>G None
M0014947 CEOJGJPB_00217 183912 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4337T>C None
M0014948 CEOJGJPB_00217 183915 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4340C>T None
M0014949 CEOJGJPB_00217 183946 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4371C>T None
M0014950 CEOJGJPB_00226 184059 3 Skin 0.05 protein_coding missense_variant MODERATE 608G>T Gly203Val
M0014951 CEOJGJPB_00226 184095 3 Skin 0.05 protein_coding missense_variant MODERATE 572G>T Arg191Ile
M0014952 CEOJGJPB_00226 184214 3 Skin 0.05 protein_coding synonymous_variant LOW 453C>T Asp151Asp
M0014953 CEOJGJPB_00061 39938 3 Skin 0.05 protein_coding missense_variant MODERATE 112G>A Val38Ile
M0014954 CEOJGJPB_00229 186749 3 Skin 0.05 protein_coding synonymous_variant LOW 408T>C Arg136Arg
M0014955 CEOJGJPB_00229 186850 4 Skin 0.07 protein_coding missense_variant MODERATE 307A>G Thr103Ala
M0014956 CEOJGJPB_00229 186885 4 Skin 0.07 protein_coding missense_variant MODERATE 272C>T Pro91Leu
M0014957 CEOJGJPB_00229 186996 4 Skin 0.07 protein_coding missense_variant MODERATE 161C>T Ala54Val
M0014958 CEOJGJPB_00230 187216 3 Skin 0.05 protein_coding missense_variant MODERATE 605A>T Asn202Ile
M0014959 CEOJGJPB_00230 187293 3 Skin 0.05 protein_coding synonymous_variant LOW 528T>C Tyr176Tyr
M0014960 CEOJGJPB_00230 187327 3 Skin 0.05 protein_coding missense_variant MODERATE 494T>C Met165Thr
M0014961 CEOJGJPB_00230 187330 3 Skin 0.05 protein_coding missense_variant MODERATE 491T>C Ile164Thr
M0014962 CEOJGJPB_00230 187331 3 Skin 0.05 protein_coding missense_variant MODERATE 490A>G Ile164Val
M0014963 CEOJGJPB_00230 187369 3 Skin 0.05 protein_coding missense_variant MODERATE 452T>C Ile151Thr
M0014964 CEOJGJPB_00230 187500 3 Skin 0.05 protein_coding synonymous_variant LOW 321C>A Ile107Ile
M0014965 CEOJGJPB_00230 187552 3 Skin 0.05 protein_coding missense_variant MODERATE 269G>A Arg90Gln
M0014966 CEOJGJPB_00226 187841 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3175T>C None
M0014967 CEOJGJPB_00226 187858 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3192G>T None
M0014968 CEOJGJPB_00226 187872 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3206G>A None
M0014969 CEOJGJPB_00231 188160 3 Skin 0.05 protein_coding synonymous_variant LOW 996C>T Tyr332Tyr
M0014970 CEOJGJPB_00231 188244 3 Skin 0.05 protein_coding missense_variant MODERATE 912G>A Met304Ile
M0014971 CEOJGJPB_00231 188268 3 Skin 0.05 protein_coding synonymous_variant LOW 888A>G Thr296Thr
M0014972 CEOJGJPB_00231 188273 3 Skin 0.05 protein_coding missense_variant MODERATE 883T>C Phe295Leu
M0014973 CEOJGJPB_00231 188339 3 Skin 0.05 protein_coding missense_variant MODERATE 817G>A Gly273Arg
M0014974 CEOJGJPB_00231 188422 3 Skin 0.05 protein_coding missense_variant MODERATE 734G>A Gly245Asp
M0014975 CEOJGJPB_00231 188496 3 Skin 0.05 protein_coding synonymous_variant LOW 660T>G Thr220Thr
M0014976 CEOJGJPB_00231 188507 3 Skin 0.05 protein_coding missense_variant MODERATE 649A>T Thr217Ser
M0014977 CEOJGJPB_00231 188568 3 Skin 0.05 protein_coding synonymous_variant LOW 588A>G Thr196Thr
M0014978 CEOJGJPB_00231 188638 3 Skin 0.05 protein_coding missense_variant MODERATE 518C>T Thr173Met
M0014979 CEOJGJPB_00231 188670 3 Skin 0.05 protein_coding synonymous_variant LOW 486G>A Ala162Ala
M0014980 CEOJGJPB_00231 188718 3 Skin 0.05 protein_coding synonymous_variant LOW 438C>T His146His
M0014981 CEOJGJPB_00231 188936 3 Skin 0.05 protein_coding missense_variant MODERATE 220A>G Thr74Ala
M0014982 CEOJGJPB_00231 189013 3 Skin 0.05 protein_coding missense_variant MODERATE 143A>G Asp48Gly
M0014983 CEOJGJPB_00231 189095 3 Skin 0.05 protein_coding missense_variant MODERATE 61C>T Pro21Ser
M0014984 CEOJGJPB_00226 189286 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4620T>C None
M0014985 CEOJGJPB_00226 189349 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4683G>A None
M0014986 CEOJGJPB_00226 189353 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4687T>A None
M0014987 CEOJGJPB_00226 189361 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4695A>T None
M0014988 CEOJGJPB_00232 189462 3 Skin 0.05 protein_coding missense_variant MODERATE 833C>T Ala278Val
M0014989 CEOJGJPB_00232 189576 3 Skin 0.05 protein_coding missense_variant MODERATE 719A>G Asn240Ser
M0014990 CEOJGJPB_00232 189685 3 Skin 0.05 protein_coding missense_variant MODERATE 610A>G Ile204Val
M0014991 CEOJGJPB_00232 189698 3 Skin 0.05 protein_coding missense_variant MODERATE 597G>T Glu199Asp
M0014992 CEOJGJPB_00232 189716 3 Skin 0.05 protein_coding synonymous_variant LOW 579C>T Tyr193Tyr
M0014993 CEOJGJPB_00232 189743 3 Skin 0.05 protein_coding synonymous_variant LOW 552T>C Tyr184Tyr
M0014994 CEOJGJPB_00232 189772 3 Skin 0.05 protein_coding missense_variant MODERATE 523T>G Ser175Ala
M0014995 CEOJGJPB_00232 189809 3 Skin 0.05 protein_coding synonymous_variant LOW 486T>C Cys162Cys
M0014996 CEOJGJPB_00232 189857 3 Skin 0.05 protein_coding synonymous_variant LOW 438C>T Tyr146Tyr
M0014997 CEOJGJPB_00232 189901 3 Skin 0.05 protein_coding missense_variant MODERATE 394C>T His132Tyr
M0014998 CEOJGJPB_00232 189902 3 Skin 0.05 protein_coding synonymous_variant LOW 393A>G Val131Val
M0014999 CEOJGJPB_00232 189952 3 Skin 0.05 protein_coding missense_variant MODERATE 343C>G Leu115Val
M0015000 CEOJGJPB_00232 190007 3 Skin 0.05 protein_coding synonymous_variant LOW 288T>C Tyr96Tyr
M0015001 CEOJGJPB_00232 190125 3 Skin 0.05 protein_coding missense_variant MODERATE 170A>G Asn57Ser
M0015002 CEOJGJPB_00232 190273 3 Skin 0.05 protein_coding synonymous_variant LOW 22T>C Leu8Leu
M0015003 CEOJGJPB_00233 190386 3 Skin 0.05 protein_coding synonymous_variant LOW 927C>T Ala309Ala
M0015004 CEOJGJPB_00233 190433 3 Skin 0.05 protein_coding synonymous_variant LOW 880C>T Leu294Leu
M0015005 CEOJGJPB_00233 190456 3 Skin 0.05 protein_coding missense_variant MODERATE 857C>T Ala286Val
M0015006 CEOJGJPB_00233 190460 3 Skin 0.05 protein_coding missense_variant MODERATE 853T>C Phe285Leu
M0015007 CEOJGJPB_00233 190530 3 Skin 0.05 protein_coding synonymous_variant LOW 783C>G Ala261Ala
M0015008 CEOJGJPB_00233 190608 3 Skin 0.05 protein_coding synonymous_variant LOW 705T>C Phe235Phe
M0015009 CEOJGJPB_00233 190764 3 Skin 0.05 protein_coding synonymous_variant LOW 549T>C Val183Val
M0015010 CEOJGJPB_00233 190828 3 Skin 0.05 protein_coding missense_variant MODERATE 485G>A Arg162Gln
M0015011 CEOJGJPB_00233 190896 3 Skin 0.05 protein_coding synonymous_variant LOW 417G>A Glu139Glu
M0015012 CEOJGJPB_00233 190900 3 Skin 0.05 protein_coding missense_variant MODERATE 413A>G His138Arg
M0015013 CEOJGJPB_00233 190910 3 Skin 0.05 protein_coding synonymous_variant LOW 403C>T Leu135Leu
M0015014 CEOJGJPB_00233 190989 3 Skin 0.05 protein_coding synonymous_variant LOW 324G>A Arg108Arg
M0015015 CEOJGJPB_00233 191221 3 Skin 0.05 protein_coding missense_variant MODERATE 92A>G His31Arg
M0015016 CEOJGJPB_00233 191269 3 Skin 0.05 protein_coding stop_gained HIGH 44T>A Leu15*
M0015017 CEOJGJPB_00229 191320 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4164T>C None
M0015018 CEOJGJPB_00229 191457 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4301G>A None
M0015019 CEOJGJPB_00234 191675 3 Skin 0.05 protein_coding missense_variant MODERATE 16T>C Phe6Leu
M0015020 CEOJGJPB_00234 191676 3 Skin 0.05 protein_coding synonymous_variant LOW 15A>G Leu5Leu
M0015021 CEOJGJPB_00229 191716 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4560T>C None
M0015022 CEOJGJPB_00229 191773 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4617T>C None
M0015023 CEOJGJPB_00229 191817 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4661T>G None
M0015024 CEOJGJPB_00229 191820 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4664C>T None
M0015025 CEOJGJPB_00229 191902 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4746G>A None
M0015026 CEOJGJPB_00229 191955 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4799C>A None
M0015027 CEOJGJPB_00229 191970 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4814C>T None
M0015028 CEOJGJPB_00229 191974 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4818T>G None
M0015029 CEOJGJPB_00229 192107 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4951A>G None
M0015030 CEOJGJPB_00230 192177 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4357C>T None
M0015031 CEOJGJPB_00235 192200 4 Skin 0.07 protein_coding missense_variant MODERATE 317T>C Phe106Ser
M0015032 CEOJGJPB_00235 192234 4 Skin 0.07 protein_coding missense_variant MODERATE 283G>A Gly95Ser
M0015033 CEOJGJPB_00235 192254 4 Skin 0.07 protein_coding missense_variant MODERATE 263C>A Ala88Asp
M0015034 CEOJGJPB_00235 192260 4 Skin 0.07 protein_coding missense_variant MODERATE 257T>G Met86Arg
M0015035 CEOJGJPB_00235 192293 4 Skin 0.07 protein_coding missense_variant MODERATE 224G>A Gly75Asp
M0015036 CEOJGJPB_00235 192370 4 Skin 0.07 protein_coding synonymous_variant LOW 147A>G Lys49Lys
M0015037 CEOJGJPB_00235 192376 4 Skin 0.07 protein_coding synonymous_variant LOW 141T>G Thr47Thr
M0015038 CEOJGJPB_00235 192402 4 Skin 0.07 protein_coding missense_variant MODERATE 115A>T Ile39Leu
M0015039 CEOJGJPB_00235 192404 4 Skin 0.07 protein_coding missense_variant MODERATE 113C>T Thr38Ile
M0015040 CEOJGJPB_00235 192415 4 Skin 0.07 protein_coding synonymous_variant LOW 102A>G Ser34Ser
M0015041 CEOJGJPB_00235 192456 4 Skin 0.07 protein_coding missense_variant MODERATE 61T>C Tyr21His
M0015042 CEOJGJPB_00235 192497 4 Skin 0.07 protein_coding missense_variant MODERATE 20T>C Val7Ala
M0015043 CEOJGJPB_00230 192530 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4710T>C None
M0015044 CEOJGJPB_00230 192540 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4720C>T None
M0015045 CEOJGJPB_00230 192609 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4789C>T None
M0015046 CEOJGJPB_00230 192661 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4841A>G None
M0015047 CEOJGJPB_00230 192662 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4842A>G None
M0015048 CEOJGJPB_00230 192680 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4860C>A None
M0015049 CEOJGJPB_00236 192790 4 Skin 0.07 protein_coding synonymous_variant LOW 681A>T Ile227Ile
M0015050 CEOJGJPB_00236 192837 3 Skin 0.05 protein_coding missense_variant MODERATE 634C>T Pro212Ser
M0015051 CEOJGJPB_00236 192869 4 Skin 0.07 protein_coding missense_variant MODERATE 602T>C Leu201Ser
M0015052 CEOJGJPB_00236 192956 4 Skin 0.07 protein_coding missense_variant MODERATE 515A>T Lys172Met
M0015053 CEOJGJPB_00236 193076 4 Skin 0.07 protein_coding missense_variant MODERATE 395T>C Val132Ala
M0015054 CEOJGJPB_00236 193098 4 Skin 0.07 protein_coding missense_variant MODERATE 373T>C Ser125Pro
M0015055 CEOJGJPB_00236 193134 4 Skin 0.07 protein_coding missense_variant MODERATE 337C>A His113Asn
M0015056 CEOJGJPB_00236 193240 4 Skin 0.07 protein_coding missense_variant MODERATE 231A>G Ile77Met
M0015057 CEOJGJPB_00236 193241 4 Skin 0.07 protein_coding missense_variant MODERATE 230T>C Ile77Thr
M0015058 CEOJGJPB_00236 193254 4 Skin 0.07 protein_coding missense_variant MODERATE 217A>C Lys73Gln
M0015059 CEOJGJPB_00236 193346 4 Skin 0.07 protein_coding missense_variant MODERATE 125A>G Glu42Gly
M0015060 CEOJGJPB_00236 193378 4 Skin 0.07 protein_coding synonymous_variant LOW 93A>G Glu31Glu
M0015061 CEOJGJPB_00236 193405 4 Skin 0.07 protein_coding synonymous_variant LOW 66C>T Gly22Gly
M0015062 CEOJGJPB_00236 193413 4 Skin 0.07 protein_coding missense_variant MODERATE 58G>A Val20Ile
M0015063 CEOJGJPB_00236 193468 4 Skin 0.07 protein_coding synonymous_variant LOW 3G>T Val1Val
M0015064 CEOJGJPB_00231 193537 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4382A>C None
M0015065 CEOJGJPB_00231 193538 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4383A>G None
M0015066 CEOJGJPB_00231 193539 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4384C>T None
M0015067 CEOJGJPB_00231 193540 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4385T>G None
M0015068 CEOJGJPB_00231 193544 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4389A>G None
M0015069 CEOJGJPB_00231 193546 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4391T>C None
M0015070 CEOJGJPB_00231 193581 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4426T>G None
M0015071 CEOJGJPB_00231 193592 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4437A>G None
M0015072 CEOJGJPB_00231 193731 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4576T>A None
M0015073 CEOJGJPB_00231 193853 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4698T>C None
M0015074 CEOJGJPB_00237 193946 3 Skin 0.05 protein_coding missense_variant MODERATE 7C>G Gln3Glu
M0015075 CEOJGJPB_00237 193983 3 Skin 0.05 protein_coding missense_variant MODERATE 44T>C Leu15Ser
M0015076 CEOJGJPB_00237 194019 3 Skin 0.05 protein_coding missense_variant MODERATE 80A>G Glu27Gly
M0015077 CEOJGJPB_00237 194050 3 Skin 0.05 protein_coding synonymous_variant LOW 111T>C Cys37Cys
M0015078 CEOJGJPB_00237 194147 3 Skin 0.05 protein_coding missense_variant MODERATE 208A>G Ile70Val
M0015079 CEOJGJPB_00237 194200 3 Skin 0.05 protein_coding missense_variant MODERATE 261C>A His87Gln
M0015080 CEOJGJPB_00237 194238 3 Skin 0.05 protein_coding missense_variant MODERATE 299G>A Gly100Asp
M0015081 CEOJGJPB_00237 194308 3 Skin 0.05 protein_coding synonymous_variant LOW 369G>T Ala123Ala
M0015082 CEOJGJPB_00237 194349 3 Skin 0.05 protein_coding missense_variant MODERATE 410A>C Gln137Pro
M0015083 CEOJGJPB_00087 68623 3 Skin 0.05 protein_coding missense_variant MODERATE 187C>T His63Tyr
M0015084 CEOJGJPB_00229 186086 4 Skin 0.07 protein_coding synonymous_variant LOW 1071G>A Leu357Leu
M0015085 CEOJGJPB_00229 186603 3 Skin 0.05 protein_coding missense_variant MODERATE 554C>T Pro185Leu
M0015086 CEOJGJPB_00229 186610 3 Skin 0.05 protein_coding missense_variant MODERATE 547G>A Glu183Lys
M0015087 CEOJGJPB_00002 2401 8 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -1669C>T None
M0015088 CEOJGJPB_00056 35607 3 Skin 0.05 protein_coding missense_variant MODERATE 522A>C Lys174Asn
M0015089 CEOJGJPB_00056 35619 3 Skin 0.05 protein_coding synonymous_variant LOW 534C>T Tyr178Tyr
M0015090 CEOJGJPB_00056 35646 3 Skin 0.05 protein_coding synonymous_variant LOW 561A>G Pro187Pro
M0015091 CEOJGJPB_00037 30355 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4895C>T None
M0015092 CEOJGJPB_00037 30359 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4899A>G None
M0015093 CEOJGJPB_00037 30380 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4920A>T None
M0015094 CEOJGJPB_00037 30415 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4955T>C None
M0015095 CEOJGJPB_00037 30424 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4964C>T None
M0015096 CEOJGJPB_00046 30479 3 Skin 0.05 protein_coding missense_variant MODERATE 14T>A Val5Asp
M0015097 CEOJGJPB_00046 30535 3 Skin 0.05 protein_coding missense_variant MODERATE 70A>G Ser24Gly
M0015098 CEOJGJPB_00038 30709 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4521C>A None
M0015099 CEOJGJPB_00047 30812 3 Skin 0.05 protein_coding missense_variant MODERATE 25A>G Thr9Ala
M0015100 CEOJGJPB_00047 30842 3 Skin 0.05 protein_coding missense_variant MODERATE 55A>G Thr19Ala
M0015101 CEOJGJPB_00047 30856 3 Skin 0.05 protein_coding synonymous_variant LOW 69A>C Ala23Ala
M0015102 CEOJGJPB_00047 30880 3 Skin 0.05 protein_coding synonymous_variant LOW 93T>C His31His
M0015103 CEOJGJPB_00047 30980 3 Skin 0.05 protein_coding missense_variant MODERATE 193A>G Asn65Asp
M0015104 CEOJGJPB_00038 31113 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4925C>T None
M0015105 CEOJGJPB_00038 31179 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4991G>A None
M0015106 CEOJGJPB_00039 31189 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4762A>G None
M0015107 CEOJGJPB_00039 31214 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4787A>G None
M0015108 CEOJGJPB_00039 31230 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4803A>G None
M0015109 CEOJGJPB_00039 31259 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4832A>G None
M0015110 CEOJGJPB_00039 31280 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4853A>G None
M0015111 CEOJGJPB_00039 31338 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4911C>T None
M0015112 CEOJGJPB_00039 31341 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4914T>A None
M0015113 CEOJGJPB_00039 31356 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4929T>A None
M0015114 CEOJGJPB_00039 31381 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4954C>T None
M0015115 CEOJGJPB_00048 31418 3 Skin 0.05 protein_coding missense_variant MODERATE 13G>T Asp5Tyr
M0015116 CEOJGJPB_00048 31447 3 Skin 0.05 protein_coding synonymous_variant LOW 42T>C Ala14Ala
M0015117 CEOJGJPB_00048 31490 3 Skin 0.05 protein_coding missense_variant MODERATE 85A>C Asn29His
M0015118 CEOJGJPB_00048 31502 3 Skin 0.05 protein_coding missense_variant MODERATE 97A>G Ile33Val
M0015119 CEOJGJPB_00048 31509 3 Skin 0.05 protein_coding missense_variant MODERATE 104G>A Gly35Asp
M0015120 CEOJGJPB_00048 31551 3 Skin 0.05 protein_coding missense_variant MODERATE 146A>G Lys49Arg
M0015121 CEOJGJPB_00041 31679 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4711G>A None
M0015122 CEOJGJPB_00041 31702 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4734T>C None
M0015123 CEOJGJPB_00049 31727 3 Skin 0.05 protein_coding missense_variant MODERATE 20A>C Asn7Thr
M0015124 CEOJGJPB_00049 31732 3 Skin 0.05 protein_coding missense_variant MODERATE 25A>G Asn9Asp
M0015125 CEOJGJPB_00049 31769 3 Skin 0.05 protein_coding missense_variant MODERATE 62G>A Gly21Asp
M0015126 CEOJGJPB_00049 31867 3 Skin 0.05 protein_coding missense_variant MODERATE 160G>A Glu54Lys
M0015127 CEOJGJPB_00049 31897 3 Skin 0.05 protein_coding missense_variant MODERATE 190A>G Ile64Val
M0015128 CEOJGJPB_00049 31957 3 Skin 0.05 protein_coding missense_variant MODERATE 250A>G Thr84Ala
M0015129 CEOJGJPB_00042 32098 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3838A>G None
M0015130 CEOJGJPB_00042 32167 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3907G>T None
M0015131 CEOJGJPB_00042 32181 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3921T>C None
M0015132 CEOJGJPB_00042 32192 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3932A>G None
M0015133 CEOJGJPB_00042 32226 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3966T>C None
M0015134 CEOJGJPB_00042 32270 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4010T>A None
M0015135 CEOJGJPB_00050 32336 3 Skin 0.05 protein_coding missense_variant MODERATE 260A>G Asn87Ser
M0015136 CEOJGJPB_00050 32378 3 Skin 0.05 protein_coding missense_variant MODERATE 218A>G Asp73Gly
M0015137 CEOJGJPB_00050 32538 3 Skin 0.05 protein_coding missense_variant MODERATE 58G>T Val20Leu
M0015138 CEOJGJPB_00050 32579 3 Skin 0.05 protein_coding missense_variant MODERATE 17T>C Ile6Thr
M0015139 CEOJGJPB_00042 32642 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4382T>C None
M0015140 CEOJGJPB_00042 32648 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4388T>C None
M0015141 CEOJGJPB_00051 32742 3 Skin 0.05 protein_coding synonymous_variant LOW 195T>C Ala65Ala
M0015142 CEOJGJPB_00051 32771 3 Skin 0.05 protein_coding missense_variant MODERATE 166A>C Thr56Pro
M0015143 CEOJGJPB_00051 32869 3 Skin 0.05 protein_coding missense_variant MODERATE 68G>C Arg23Thr
M0015144 CEOJGJPB_00052 32952 3 Skin 0.05 protein_coding missense_variant MODERATE 458T>C Ile153Thr
M0015145 CEOJGJPB_00052 32977 3 Skin 0.05 protein_coding synonymous_variant LOW 433T>C Leu145Leu
M0015146 CEOJGJPB_00052 32980 3 Skin 0.05 protein_coding missense_variant MODERATE 430A>G Ile144Val
M0015147 CEOJGJPB_00052 33215 3 Skin 0.05 protein_coding synonymous_variant LOW 195G>A Glu65Glu
M0015148 CEOJGJPB_00052 33333 3 Skin 0.05 protein_coding missense_variant MODERATE 77C>A Ala26Glu
M0015149 CEOJGJPB_00052 33371 3 Skin 0.05 protein_coding synonymous_variant LOW 39C>A Gly13Gly
M0015150 CEOJGJPB_00043 33413 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4796T>G None
M0015151 CEOJGJPB_00043 33421 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4804T>C None
M0015152 CEOJGJPB_00043 33471 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4854A>C None
M0015153 CEOJGJPB_00043 33481 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4864G>A None
M0015154 CEOJGJPB_00053 33605 3 Skin 0.05 protein_coding missense_variant MODERATE 375T>G His125Gln
M0015155 CEOJGJPB_00053 33620 3 Skin 0.05 protein_coding missense_variant MODERATE 360T>A Phe120Leu
M0015156 CEOJGJPB_00053 33633 3 Skin 0.05 protein_coding missense_variant MODERATE 347T>C Val116Ala
M0015157 CEOJGJPB_00053 33648 3 Skin 0.05 protein_coding missense_variant MODERATE 332T>G Met111Arg
M0015158 CEOJGJPB_00053 33697 3 Skin 0.05 protein_coding missense_variant MODERATE 283C>T Pro95Ser
M0015159 CEOJGJPB_00053 33851 3 Skin 0.05 protein_coding synonymous_variant LOW 129A>T Ala43Ala
M0015160 CEOJGJPB_00053 33852 3 Skin 0.05 protein_coding missense_variant MODERATE 128C>T Ala43Val
M0015161 CEOJGJPB_00053 33880 3 Skin 0.05 protein_coding missense_variant MODERATE 100G>A Val34Ile
M0015162 CEOJGJPB_00053 33881 3 Skin 0.05 protein_coding synonymous_variant LOW 99T>C Asp33Asp
M0015163 CEOJGJPB_00001 206 3 Skin 0.05 protein_coding synonymous_variant LOW 168T>C Arg56Arg
M0015164 CEOJGJPB_00001 539 3 Skin 0.05 protein_coding downstream_gene_variant MODIFIER *75C>A None
M0015165 CEOJGJPB_00002 752 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -20A>G None
M0015166 CEOJGJPB_00002 756 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -24G>A None
M0015167 CEOJGJPB_00004 1372 3 Skin 0.05 protein_coding missense_variant MODERATE 814A>G Ser272Gly
M0015168 CEOJGJPB_00004 1407 3 Skin 0.05 protein_coding missense_variant MODERATE 779T>C Val260Ala
M0015169 CEOJGJPB_00004 1432 3 Skin 0.05 protein_coding missense_variant MODERATE 754G>A Gly252Arg
M0015170 CEOJGJPB_00004 1681 3 Skin 0.05 protein_coding missense_variant MODERATE 505T>C Ser169Pro
M0015171 CEOJGJPB_00004 1703 3 Skin 0.05 protein_coding missense_variant MODERATE 483G>T Met161Ile
M0015172 CEOJGJPB_00004 1746 3 Skin 0.05 protein_coding missense_variant MODERATE 440T>G Val147Gly
M0015173 CEOJGJPB_00005 2938 3 Skin 0.05 protein_coding missense_variant MODERATE 339A>G Ile113Met
M0015174 CEOJGJPB_00005 3199 3 Skin 0.05 protein_coding synonymous_variant LOW 78G>A Thr26Thr
M0015175 CEOJGJPB_00005 3200 3 Skin 0.05 protein_coding missense_variant MODERATE 77C>T Thr26Met
M0015176 CEOJGJPB_00005 3225 3 Skin 0.05 protein_coding missense_variant MODERATE 52G>A Val18Ile
M0015177 CEOJGJPB_00002 3610 3 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2878G>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
CEOJGJPB_00028 VFG001288 Intercellular adhesion proteins 74 1.1e-143 1 349 0.9803 0.9971 Biofilm intercellular adhesion protein C, involved in polysaccharide intercellular adhesin(PIA) synthesis experiment
CEOJGJPB_00022 VFG004552 Intercellular adhesion proteins 82.2 4.6e-86 1 185 1.0 1 Biofilm ica operon transcriptional regulator IcaR prediction
CEOJGJPB_00028 VFG004513 Intercellular adhesion proteins 84.5 6.2e-164 1 353 0.9916 0.9944 Biofilm intercellular adhesion protein C, involved in polysaccharide intercellular adhesin(PIA) synthesis prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
CEOJGJPB_00239 ARO:3000565 82.1 1.77e-250 2 447 0.9654 0.9911 tetracycline antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
CEOJGJPB_00028 PHI:9885 icaC 74 2.8e-143 1 349 0.9803 1.0000 rodents abscess; sepsis probable poly-beta-1,6-N-acetyl-D-glucosamine export protein unaffected pathogenicity
CEOJGJPB_00058 PHI:6191 Lqo 82.3 6.9e-249 1 497 0.9980 1.0000 rodents skin infection; food poisoning; respiratory disease L-lactate-quinone oxidoreductases reduced virulence
CEOJGJPB_00101 PHI:2634 argF 92.2 3.7e-182 1 333 1.0000 1.0000 rodents community-acquired infection; nosocomial infection ornithine carbamoyltransferase unaffected pathogenicity
CEOJGJPB_00121 PHI:6629 brnQ1 70.4 7.5e-178 2 446 0.9933 0.9978 rodents skin infection; food poisoning; respiratory disease BCAA transporter unaffected pathogenicity






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CEOJGJPB_00146 AKL93188.1|GH5 80.7 3.25e-196 1 326 0.9819 0.7775
CEOJGJPB_00147 QRJ66753.1|GT8 100 0 1 439 1 1
CEOJGJPB_00148 QRJ66752.1|GT4 100 0 1 502 1 1
CEOJGJPB_00188 QRJ66737.1|PL8_1 100 0 1 799 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
CEOJGJPB_00028 9.B.97.1.7 74 6.3e-143 1 349 0.9803 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.97 The Acyltransferase-3/Putative Acetyl-CoA Transporter (ATAT) Family
CEOJGJPB_00103 2.A.118.1.7 73.4 3.7e-213 9 518 0.9846 0.9865 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.118 The Basic Amino Acid Antiporter (ArcD) Family
CEOJGJPB_00165 3.A.1.5.43 78.3 6.3e-105 1 244 0.7305 0.9799 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CEOJGJPB_00166 3.A.1.5.43 80.1 2.1e-134 1 311 1.0000 1.2490 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CEOJGJPB_00167 3.A.1.5.33 81.4 3.8e-158 1 338 1.0000 1.2472 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CEOJGJPB_00239 2.A.1.3.22 81.9 2.3e-198 1 447 0.9675 0.9933 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)