Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1784
  Reference Plasmid   1111525849644392_bin.21__k141_318513
  Reference Plasmid Size   7598
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0015181 FDINLENI_00002 1772 3 Skin 0.21 protein_coding synonymous_variant LOW 48G>C Thr16Thr
M0015182 FDINLENI_00002 1793 3 Skin 0.21 protein_coding synonymous_variant LOW 69T>C Arg23Arg
M0015183 FDINLENI_00002 2264 3 Skin 0.21 protein_coding synonymous_variant LOW 540A>C Ala180Ala
M0015184 FDINLENI_00002 2291 3 Skin 0.21 protein_coding synonymous_variant LOW 567A>G Glu189Glu
M0015185 FDINLENI_00004 4557 3 Skin 0.21 protein_coding synonymous_variant LOW 744G>C Gly248Gly
M0015186 FDINLENI_00004 4587 3 Skin 0.21 protein_coding missense_variant MODERATE 774G>C Glu258Asp
M0015187 FDINLENI_00004 4596 3 Skin 0.21 protein_coding synonymous_variant LOW 783A>G Ala261Ala
M0015188 FDINLENI_00004 4614 3 Skin 0.21 protein_coding synonymous_variant LOW 801T>C His267His
M0015189 FDINLENI_00004 4896 3 Skin 0.21 protein_coding synonymous_variant LOW 1083T>C Thr361Thr
M0015190 FDINLENI_00004 5344 4 Skin 0.29 protein_coding synonymous_variant LOW 1531T>C Leu511Leu
M0015191 FDINLENI_00004 5400 4 Skin 0.29 protein_coding synonymous_variant LOW 1587T>C Asn529Asn
M0015192 FDINLENI_00004 5412 4 Skin 0.29 protein_coding synonymous_variant LOW 1599T>C Asp533Asp
M0015193 FDINLENI_00004 5551 4 Skin 0.29 protein_coding missense_variant MODERATE 1738T>C Phe580Leu
M0015194 FDINLENI_00004 5553 4 Skin 0.29 protein_coding missense_variant MODERATE 1740C>G Phe580Leu
M0015195 FDINLENI_00001 44 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -101T>C None
M0015196 FDINLENI_00001 89 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -56C>A None
M0015197 FDINLENI_00001 98 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -47C>A None
M0015198 FDINLENI_00001 119 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -26C>A None
M0015199 FDINLENI_00004 4830 3 Skin 0.21 protein_coding synonymous_variant LOW 1017T>C Asp339Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term