Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1773
  Reference Plasmid   1111525849644392_bin.2__k141_16307
  Reference Plasmid Size   9889
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0015253 AEOHGINI_00004 3634 3 Skin 0.30 protein_coding synonymous_variant LOW 1320C>G Leu440Leu
M0015254 AEOHGINI_00004 3670 3 Skin 0.30 protein_coding synonymous_variant LOW 1356C>G Val452Val
M0015255 AEOHGINI_00005 3861 3 Skin 0.30 protein_coding synonymous_variant LOW 36C>G Leu12Leu
M0015256 AEOHGINI_00005 4245 3 Skin 0.30 protein_coding synonymous_variant LOW 420T>C Gly140Gly
M0015257 AEOHGINI_00006 5185 3 Skin 0.30 protein_coding synonymous_variant LOW 318A>G Lys106Lys
M0015258 AEOHGINI_00006 5197 3 Skin 0.30 protein_coding synonymous_variant LOW 330T>C Ile110Ile
M0015259 AEOHGINI_00006 5242 3 Skin 0.30 protein_coding synonymous_variant LOW 375T>C Leu125Leu
M0015260 AEOHGINI_00006 5263 3 Skin 0.30 protein_coding synonymous_variant LOW 396C>T Asn132Asn
M0015261 AEOHGINI_00006 5264 3 Skin 0.30 protein_coding missense_variant MODERATE 397G>T Val133Leu
M0015262 AEOHGINI_00006 5281 3 Skin 0.30 protein_coding synonymous_variant LOW 414T>C Leu138Leu
M0015263 AEOHGINI_00006 5326 3 Skin 0.30 protein_coding synonymous_variant LOW 459A>C Val153Val
M0015264 AEOHGINI_00007 5958 3 Skin 0.30 protein_coding missense_variant MODERATE 5A>G Lys2Arg
M0015265 AEOHGINI_00002 806 3 Skin 0.30 protein_coding missense_variant MODERATE 20A>C Asn7Thr
M0015266 AEOHGINI_00002 837 3 Skin 0.30 protein_coding missense_variant MODERATE 51C>G Ile17Met
M0015267 AEOHGINI_00002 896 3 Skin 0.30 protein_coding missense_variant MODERATE 110A>G His37Arg
M0015268 AEOHGINI_00002 948 3 Skin 0.30 protein_coding synonymous_variant LOW 162G>C Val54Val
M0015269 AEOHGINI_00002 1042 3 Skin 0.30 protein_coding synonymous_variant LOW 256T>C Leu86Leu
M0015270 AEOHGINI_00002 1059 3 Skin 0.30 protein_coding synonymous_variant LOW 273C>G Ala91Ala
M0015271 AEOHGINI_00002 1392 3 Skin 0.30 protein_coding synonymous_variant LOW 606C>G Val202Val
M0015272 AEOHGINI_00002 1416 3 Skin 0.30 protein_coding synonymous_variant LOW 630T>C Leu210Leu
M0015273 AEOHGINI_00003 1691 3 Skin 0.30 protein_coding synonymous_variant LOW 171C>G Ala57Ala
M0015274 AEOHGINI_00003 1694 3 Skin 0.30 protein_coding synonymous_variant LOW 174G>C Pro58Pro
M0015275 AEOHGINI_00003 2144 3 Skin 0.30 protein_coding synonymous_variant LOW 624G>C Ala208Ala
M0015276 AEOHGINI_00003 2195 3 Skin 0.30 protein_coding synonymous_variant LOW 675G>C Thr225Thr
M0015277 AEOHGINI_00003 2206 3 Skin 0.30 protein_coding missense_variant MODERATE 686A>C Gln229Pro
M0015278 AEOHGINI_00003 2207 3 Skin 0.30 protein_coding missense_variant MODERATE 687A>C Gln229His
M0015279 AEOHGINI_00003 2212 3 Skin 0.30 protein_coding missense_variant MODERATE 692A>T Asp231Val
M0015280 AEOHGINI_00003 2222 4 Skin 0.40 protein_coding synonymous_variant LOW 702T>C His234His
M0015281 AEOHGINI_00003 2246 3 Skin 0.30 protein_coding synonymous_variant LOW 726G>C Ala242Ala
M0015282 AEOHGINI_00003 2252 3 Skin 0.30 protein_coding synonymous_variant LOW 732G>C Leu244Leu
M0015283 AEOHGINI_00003 2285 3 Skin 0.30 protein_coding synonymous_variant LOW 765G>C Gly255Gly
M0015284 AEOHGINI_00003 2311 3 Skin 0.30 protein_coding missense_variant MODERATE 791G>C Gly264Ala
M0015285 AEOHGINI_00004 2524 3 Skin 0.30 protein_coding synonymous_variant LOW 210C>G Leu70Leu
M0015286 AEOHGINI_00004 2575 3 Skin 0.30 protein_coding synonymous_variant LOW 261G>A Glu87Glu
M0015287 AEOHGINI_00004 2746 4 Skin 0.40 protein_coding synonymous_variant LOW 432T>C Ile144Ile
M0015288 AEOHGINI_00004 2858 4 Skin 0.40 protein_coding missense_variant MODERATE 544T>A Ser182Thr
M0015289 AEOHGINI_00004 2881 4 Skin 0.40 protein_coding synonymous_variant LOW 567G>C Ser189Ser
M0015290 AEOHGINI_00007 6233 3 Skin 0.30 protein_coding missense_variant MODERATE 280G>A Gly94Ser
M0015291 AEOHGINI_00007 6496 3 Skin 0.30 protein_coding synonymous_variant LOW 543C>G Gly181Gly
M0015292 AEOHGINI_00007 6656 3 Skin 0.30 protein_coding missense_variant MODERATE 703G>A Ala235Thr
M0015293 AEOHGINI_00007 6700 3 Skin 0.30 protein_coding synonymous_variant LOW 747T>G Val249Val
M0015294 AEOHGINI_00007 6709 3 Skin 0.30 protein_coding synonymous_variant LOW 756C>G Val252Val
M0015295 AEOHGINI_00007 6997 4 Skin 0.40 protein_coding synonymous_variant LOW 1044C>T His348His
M0015296 AEOHGINI_00007 7065 3 Skin 0.30 protein_coding missense_variant MODERATE 1112C>G Ala371Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term