Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1776
  Reference Plasmid   1111525849644392_bin.2__k141_223404
  Reference Plasmid Size   10149
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0015315 KDGCDNKP_00009 7734 4 Skin 0.80 protein_coding synonymous_variant LOW 591T>C Tyr197Tyr
M0015316 KDGCDNKP_00009 7926 3 Skin 0.60 protein_coding synonymous_variant LOW 783G>C Val261Val
M0015317 KDGCDNKP_00010 8570 3 Skin 0.60 protein_coding synonymous_variant LOW 321A>C Leu107Leu
M0015318 KDGCDNKP_00010 9035 3 Skin 0.60 protein_coding synonymous_variant LOW 786A>G Glu262Glu
M0015319 KDGCDNKP_00011 9200 3 Skin 0.60 protein_coding synonymous_variant LOW 69G>C Ala23Ala
M0015320 KDGCDNKP_00011 9215 3 Skin 0.60 protein_coding synonymous_variant LOW 84T>C Ile28Ile
M0015321 KDGCDNKP_00011 9260 3 Skin 0.60 protein_coding synonymous_variant LOW 129G>C Leu43Leu
M0015322 KDGCDNKP_00011 9288 3 Skin 0.60 protein_coding missense_variant MODERATE 157G>A Val53Ile
M0015323 KDGCDNKP_00011 9564 3 Skin 0.60 protein_coding synonymous_variant LOW 433T>C Leu145Leu
M0015324 KDGCDNKP_00011 9707 3 Skin 0.60 protein_coding synonymous_variant LOW 576C>G Leu192Leu
M0015325 KDGCDNKP_00006 9928 3 Skin 0.60 protein_coding downstream_gene_variant MODIFIER *4666A>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term