Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1782
  Reference Plasmid   1111525849644392_bin.2__k141_59720
  Reference Plasmid Size   9613
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0015363 LJBLCMGD_00003 2846 3 Skin 0.60 protein_coding synonymous_variant LOW 366C>G Pro122Pro
M0015364 LJBLCMGD_00003 2849 3 Skin 0.60 protein_coding synonymous_variant LOW 363C>G Ala121Ala
M0015365 LJBLCMGD_00003 2855 3 Skin 0.60 protein_coding synonymous_variant LOW 357T>C Tyr119Tyr
M0015366 LJBLCMGD_00004 3557 3 Skin 0.60 protein_coding synonymous_variant LOW 96T>C Thr32Thr
M0015367 LJBLCMGD_00004 3806 3 Skin 0.60 protein_coding synonymous_variant LOW 345T>C Gly115Gly
M0015368 LJBLCMGD_00004 3905 3 Skin 0.60 protein_coding synonymous_variant LOW 444A>G Glu148Glu
M0015369 LJBLCMGD_00004 3959 3 Skin 0.60 protein_coding synonymous_variant LOW 498T>C Asp166Asp
M0015370 LJBLCMGD_00004 4052 3 Skin 0.60 protein_coding synonymous_variant LOW 591G>T Arg197Arg
M0015371 LJBLCMGD_00004 4058 3 Skin 0.60 protein_coding synonymous_variant LOW 597G>C Leu199Leu
M0015372 LJBLCMGD_00004 4226 3 Skin 0.60 protein_coding synonymous_variant LOW 765A>G Glu255Glu
M0015373 LJBLCMGD_00004 4283 3 Skin 0.60 protein_coding synonymous_variant LOW 822G>C Pro274Pro
M0015374 LJBLCMGD_00004 4337 3 Skin 0.60 protein_coding synonymous_variant LOW 876T>C Val292Val
M0015375 LJBLCMGD_00004 4343 3 Skin 0.60 protein_coding synonymous_variant LOW 882C>G Leu294Leu
M0015376 LJBLCMGD_00004 4373 3 Skin 0.60 protein_coding synonymous_variant LOW 912C>G Pro304Pro
M0015377 LJBLCMGD_00004 4418 3 Skin 0.60 protein_coding synonymous_variant LOW 957C>G Gly319Gly
M0015378 LJBLCMGD_00004 4865 3 Skin 0.60 protein_coding synonymous_variant LOW 1404T>C Thr468Thr
M0015379 LJBLCMGD_00004 4970 3 Skin 0.60 protein_coding synonymous_variant LOW 1509G>C Thr503Thr
M0015380 LJBLCMGD_00004 5126 3 Skin 0.60 protein_coding synonymous_variant LOW 1665C>G Ala555Ala
M0015381 LJBLCMGD_00004 5159 3 Skin 0.60 protein_coding synonymous_variant LOW 1698G>C Pro566Pro
M0015382 LJBLCMGD_00002 5211 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3138C>G None
M0015383 LJBLCMGD_00005 5524 3 Skin 0.60 protein_coding synonymous_variant LOW 225C>G Gly75Gly
M0015384 LJBLCMGD_00005 5647 3 Skin 0.60 protein_coding synonymous_variant LOW 348C>T Tyr116Tyr
M0015385 LJBLCMGD_00005 5818 3 Skin 0.60 protein_coding synonymous_variant LOW 519A>C Val173Val
M0015386 LJBLCMGD_00005 5890 3 Skin 0.60 protein_coding synonymous_variant LOW 591G>C Val197Val
M0015387 LJBLCMGD_00005 5923 3 Skin 0.60 protein_coding synonymous_variant LOW 624T>C Tyr208Tyr
M0015388 LJBLCMGD_00005 5962 3 Skin 0.60 protein_coding synonymous_variant LOW 663C>G Ala221Ala
M0015389 LJBLCMGD_00005 5965 3 Skin 0.60 protein_coding synonymous_variant LOW 666G>C Pro222Pro
M0015390 LJBLCMGD_00005 6043 3 Skin 0.60 protein_coding synonymous_variant LOW 744A>G Gln248Gln
M0015391 LJBLCMGD_00005 6058 3 Skin 0.60 protein_coding synonymous_variant LOW 759C>G Leu253Leu
M0015392 LJBLCMGD_00005 6067 3 Skin 0.60 protein_coding synonymous_variant LOW 768C>G Gly256Gly
M0015393 LJBLCMGD_00005 6145 3 Skin 0.60 protein_coding synonymous_variant LOW 846T>C Gly282Gly
M0015394 LJBLCMGD_00005 6265 3 Skin 0.60 protein_coding synonymous_variant LOW 966G>C Arg322Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term