Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1787
  Reference Plasmid   1111525849644392_bin.4__k141_101467
  Reference Plasmid Size   6136
  Reference Plasmid GC Content   0.58
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0015395 PKNPECCO_00002 1802 16 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -23A>G None
M0015396 PKNPECCO_00003 2308 25 Skin 0.78 protein_coding missense_variant MODERATE 274C>G His92Asp
M0015397 PKNPECCO_00003 2567 8 Skin 0.25 protein_coding synonymous_variant LOW 15C>T Ser5Ser
M0015398 PKNPECCO_00005 3905 7 Skin 0.22 protein_coding missense_variant MODERATE 595G>A Val199Ile
M0015399 PKNPECCO_00005 4350 18 Skin 0.56 protein_coding missense_variant MODERATE 1040T>C Ile347Thr
M0015400 PKNPECCO_00001 220 3 Skin 0.09 protein_coding synonymous_variant LOW 156G>A Thr52Thr
M0015401 PKNPECCO_00001 298 3 Skin 0.09 protein_coding synonymous_variant LOW 234G>A Leu78Leu
M0015402 PKNPECCO_00001 337 7 Skin 0.22 protein_coding synonymous_variant LOW 273A>G Glu91Glu
M0015403 PKNPECCO_00001 338 7 Skin 0.22 protein_coding missense_variant MODERATE 274A>G Met92Val
M0015404 PKNPECCO_00001 568 18 Skin 0.56 protein_coding synonymous_variant LOW 504T>C Thr168Thr
M0015405 PKNPECCO_00002 1241 5 Skin 0.16 protein_coding missense_variant MODERATE 539C>T Ala180Val
M0015406 PKNPECCO_00002 1681 3 Skin 0.09 protein_coding synonymous_variant LOW 99G>T Val33Val
M0015407 PKNPECCO_00002 1769 7 Skin 0.22 protein_coding missense_variant MODERATE 11G>C Ser4Thr
M0015408 PKNPECCO_00002 1801 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -22A>G None
M0015409 PKNPECCO_00002 1857 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -78T>C None
M0015410 PKNPECCO_00001 202 5 Skin 0.16 protein_coding synonymous_variant LOW 138A>G Pro46Pro
M0015411 PKNPECCO_00001 295 4 Skin 0.13 protein_coding synonymous_variant LOW 231T>C Tyr77Tyr
M0015412 PKNPECCO_00001 577 4 Skin 0.13 protein_coding synonymous_variant LOW 513A>G Glu171Glu
M0015413 PKNPECCO_00001 616 4 Skin 0.13 protein_coding synonymous_variant LOW 552A>G Leu184Leu
M0015414 PKNPECCO_00001 665 5 Skin 0.16 protein_coding missense_variant MODERATE 601A>G Asn201Asp
M0015415 PKNPECCO_00001 832 4 Skin 0.13 protein_coding synonymous_variant LOW 768T>C Ala256Ala
M0015416 PKNPECCO_00004 926 5 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1771T>C None
M0015417 PKNPECCO_00002 1064 5 Skin 0.16 protein_coding missense_variant MODERATE 716T>C Val239Ala
M0015418 PKNPECCO_00002 1132 5 Skin 0.16 protein_coding synonymous_variant LOW 648C>G Val216Val
M0015419 PKNPECCO_00002 1200 5 Skin 0.16 protein_coding synonymous_variant LOW 580T>C Leu194Leu
M0015420 PKNPECCO_00002 1208 5 Skin 0.16 protein_coding missense_variant MODERATE 572C>T Ala191Val
M0015421 PKNPECCO_00002 1398 5 Skin 0.16 protein_coding synonymous_variant LOW 382T>C Leu128Leu
M0015422 PKNPECCO_00002 1693 4 Skin 0.13 protein_coding synonymous_variant LOW 87T>C Leu29Leu
M0015423 PKNPECCO_00005 3875 7 Skin 0.22 protein_coding missense_variant MODERATE 565T>C Phe189Leu
M0015424 PKNPECCO_00005 4156 8 Skin 0.25 protein_coding synonymous_variant LOW 846T>C Ala282Ala
M0015425 PKNPECCO_00005 4210 8 Skin 0.25 protein_coding missense_variant MODERATE 900C>G Ile300Met
M0015426 PKNPECCO_00005 4227 8 Skin 0.25 protein_coding missense_variant MODERATE 917A>G Asn306Ser
M0015427 PKNPECCO_00005 4255 8 Skin 0.25 protein_coding synonymous_variant LOW 945A>G Pro315Pro
M0015428 PKNPECCO_00005 4444 9 Skin 0.28 protein_coding synonymous_variant LOW 1134G>A Ala378Ala
M0015429 PKNPECCO_00005 4489 10 Skin 0.31 protein_coding synonymous_variant LOW 1179T>C His393His
M0015430 PKNPECCO_00005 4507 10 Skin 0.31 protein_coding synonymous_variant LOW 1197A>G Leu399Leu
M0015431 PKNPECCO_00002 4753 8 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -2974C>A None
M0015432 PKNPECCO_00006 4760 8 Skin 0.25 protein_coding synonymous_variant LOW 453A>G Glu151Glu
M0015433 PKNPECCO_00006 4823 7 Skin 0.22 protein_coding synonymous_variant LOW 390T>C His130His
M0015434 PKNPECCO_00006 4844 7 Skin 0.22 protein_coding synonymous_variant LOW 369T>G Pro123Pro
M0015435 PKNPECCO_00006 5033 6 Skin 0.19 protein_coding synonymous_variant LOW 180A>G Thr60Thr
M0015436 PKNPECCO_00006 5048 6 Skin 0.19 protein_coding synonymous_variant LOW 165T>C Asp55Asp
M0015437 PKNPECCO_00006 5209 6 Skin 0.19 protein_coding missense_variant MODERATE 4A>G Thr2Ala
M0015438 PKNPECCO_00006 5212 6 Skin 0.19 protein_coding missense_variant MODERATE 1G>A Val1Met
M0015439 PKNPECCO_00002 5244 6 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -3465T>C None
M0015440 PKNPECCO_00002 5296 6 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -3517C>T None
M0015441 PKNPECCO_00007 5404 6 Skin 0.19 protein_coding synonymous_variant LOW 219C>T Cys73Cys
M0015442 PKNPECCO_00007 5459 6 Skin 0.19 protein_coding missense_variant MODERATE 164C>T Thr55Ile
M0015443 PKNPECCO_00008 5661 6 Skin 0.19 protein_coding missense_variant MODERATE 465C>A Asp155Glu
M0015444 PKNPECCO_00008 5870 7 Skin 0.22 protein_coding missense_variant MODERATE 256A>G Thr86Ala
M0015445 PKNPECCO_00008 5898 7 Skin 0.22 protein_coding synonymous_variant LOW 228A>G Val76Val
M0015446 PKNPECCO_00001 773 4 Skin 0.13 protein_coding missense_variant MODERATE 709G>A Gly237Arg
M0015447 PKNPECCO_00002 1065 6 Skin 0.19 protein_coding missense_variant MODERATE 715G>A Val239Ile
M0015448 PKNPECCO_00005 3960 7 Skin 0.22 protein_coding missense_variant MODERATE 650C>A Ala217Glu
M0015449 PKNPECCO_00005 3909 7 Skin 0.22 protein_coding missense_variant MODERATE 599C>T Ala200Val
M0015450 PKNPECCO_00005 3943 6 Skin 0.19 protein_coding synonymous_variant LOW 633G>A Arg211Arg
M0015451 PKNPECCO_00005 4008 7 Skin 0.22 protein_coding missense_variant MODERATE 698C>T Ala233Val
M0015452 PKNPECCO_00005 4200 6 Skin 0.19 protein_coding missense_variant MODERATE 890C>T Ala297Val
M0015453 PKNPECCO_00005 4229 7 Skin 0.22 protein_coding missense_variant MODERATE 919A>G Asn307Asp
M0015454 PKNPECCO_00005 4243 6 Skin 0.19 protein_coding synonymous_variant LOW 933A>G Ala311Ala
M0015455 PKNPECCO_00005 4275 6 Skin 0.19 protein_coding missense_variant MODERATE 965T>C Ile322Thr
M0015456 PKNPECCO_00005 4481 9 Skin 0.28 protein_coding missense_variant MODERATE 1171C>T Pro391Ser
M0015457 PKNPECCO_00005 4496 9 Skin 0.28 protein_coding synonymous_variant LOW 1186T>C Leu396Leu
M0015458 PKNPECCO_00005 4588 8 Skin 0.25 protein_coding synonymous_variant LOW 1278G>A Ser426Ser
M0015459 PKNPECCO_00002 4683 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2904G>A None
M0015460 PKNPECCO_00002 4718 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2939C>T None
M0015461 PKNPECCO_00002 4735 7 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2956A>T None
M0015462 PKNPECCO_00006 4877 6 Skin 0.19 protein_coding synonymous_variant LOW 336C>T Thr112Thr
M0015463 PKNPECCO_00006 5108 4 Skin 0.13 protein_coding synonymous_variant LOW 105G>A Gly35Gly
M0015464 PKNPECCO_00002 5235 5 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3456G>A None
M0015465 PKNPECCO_00002 5241 5 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3462G>A None
M0015466 PKNPECCO_00002 5276 5 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3497C>A None
M0015467 PKNPECCO_00002 5308 5 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3529T>C None
M0015468 PKNPECCO_00007 5337 5 Skin 0.16 protein_coding missense_variant MODERATE 286A>G Met96Val
M0015469 PKNPECCO_00007 5374 5 Skin 0.16 protein_coding synonymous_variant LOW 249G>A Gly83Gly
M0015470 PKNPECCO_00007 5413 5 Skin 0.16 protein_coding synonymous_variant LOW 210T>C Asp70Asp
M0015471 PKNPECCO_00007 5457 5 Skin 0.16 protein_coding missense_variant MODERATE 166G>A Val56Met
M0015472 PKNPECCO_00007 5480 5 Skin 0.16 protein_coding missense_variant MODERATE 143A>G His48Arg
M0015473 PKNPECCO_00007 5524 6 Skin 0.19 protein_coding synonymous_variant LOW 99T>C Gly33Gly
M0015474 PKNPECCO_00007 5530 6 Skin 0.19 protein_coding synonymous_variant LOW 93A>G Gly31Gly
M0015475 PKNPECCO_00007 5535 6 Skin 0.19 protein_coding missense_variant MODERATE 88A>G Ile30Val
M0015476 PKNPECCO_00007 5563 6 Skin 0.19 protein_coding synonymous_variant LOW 60G>A Leu20Leu
M0015477 PKNPECCO_00008 5685 5 Skin 0.16 protein_coding synonymous_variant LOW 441A>G Thr147Thr
M0015478 PKNPECCO_00008 5775 4 Skin 0.13 protein_coding synonymous_variant LOW 351G>A Ala117Ala
M0015479 PKNPECCO_00008 5899 6 Skin 0.19 protein_coding missense_variant MODERATE 227T>C Val76Ala
M0015480 PKNPECCO_00001 142 4 Skin 0.13 protein_coding synonymous_variant LOW 78C>G Ala26Ala
M0015481 PKNPECCO_00001 160 4 Skin 0.13 protein_coding synonymous_variant LOW 96C>T Pro32Pro
M0015482 PKNPECCO_00001 210 4 Skin 0.13 protein_coding missense_variant MODERATE 146A>G Asp49Gly
M0015483 PKNPECCO_00001 230 4 Skin 0.13 protein_coding missense_variant MODERATE 166G>A Asp56Asn
M0015484 PKNPECCO_00001 373 3 Skin 0.09 protein_coding synonymous_variant LOW 309G>A Arg103Arg
M0015485 PKNPECCO_00001 385 3 Skin 0.09 protein_coding synonymous_variant LOW 321G>A Lys107Lys
M0015486 PKNPECCO_00001 748 4 Skin 0.13 protein_coding synonymous_variant LOW 684G>A Leu228Leu
M0015487 PKNPECCO_00001 892 5 Skin 0.16 protein_coding synonymous_variant LOW 828C>T Cys276Cys
M0015488 PKNPECCO_00004 947 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -1750C>T None
M0015489 PKNPECCO_00002 993 4 Skin 0.13 protein_coding stop_gained HIGH 787C>T Gln263*
M0015490 PKNPECCO_00002 1000 4 Skin 0.13 protein_coding synonymous_variant LOW 780A>C Val260Val
M0015491 PKNPECCO_00002 1019 4 Skin 0.13 protein_coding missense_variant MODERATE 761C>T Ala254Val
M0015492 PKNPECCO_00002 1072 4 Skin 0.13 protein_coding synonymous_variant LOW 708C>T Ser236Ser
M0015493 PKNPECCO_00002 1176 4 Skin 0.13 protein_coding missense_variant MODERATE 604C>T His202Tyr
M0015494 PKNPECCO_00002 1194 4 Skin 0.13 protein_coding missense_variant MODERATE 586A>G Ser196Gly
M0015495 PKNPECCO_00002 1240 4 Skin 0.13 protein_coding synonymous_variant LOW 540C>T Ala180Ala
M0015496 PKNPECCO_00002 1252 4 Skin 0.13 protein_coding synonymous_variant LOW 528G>A Arg176Arg
M0015497 PKNPECCO_00002 1267 4 Skin 0.13 protein_coding missense_variant MODERATE 513C>G Asp171Glu
M0015498 PKNPECCO_00002 1270 4 Skin 0.13 protein_coding synonymous_variant LOW 510C>T His170His
M0015499 PKNPECCO_00002 1312 5 Skin 0.16 protein_coding synonymous_variant LOW 468C>T Thr156Thr
M0015500 PKNPECCO_00002 1333 5 Skin 0.16 protein_coding synonymous_variant LOW 447A>G Gln149Gln
M0015501 PKNPECCO_00002 1353 5 Skin 0.16 protein_coding missense_variant MODERATE 427G>A Ala143Thr
M0015502 PKNPECCO_00002 1360 5 Skin 0.16 protein_coding synonymous_variant LOW 420C>T Ala140Ala
M0015503 PKNPECCO_00002 1430 3 Skin 0.09 protein_coding missense_variant MODERATE 350C>A Ala117Glu
M0015504 PKNPECCO_00002 1504 3 Skin 0.09 protein_coding synonymous_variant LOW 276A>G Leu92Leu
M0015505 PKNPECCO_00002 1507 3 Skin 0.09 protein_coding synonymous_variant LOW 273C>A Val91Val
M0015506 PKNPECCO_00002 1537 3 Skin 0.09 protein_coding synonymous_variant LOW 243A>G Val81Val
M0015507 PKNPECCO_00002 1576 3 Skin 0.09 protein_coding synonymous_variant LOW 204C>T Cys68Cys
M0015508 PKNPECCO_00002 1597 3 Skin 0.09 protein_coding synonymous_variant LOW 183G>A Ser61Ser
M0015509 PKNPECCO_00002 1707 3 Skin 0.09 protein_coding missense_variant MODERATE 73C>T Pro25Ser
M0015510 PKNPECCO_00002 5331 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3552G>T None
M0015511 PKNPECCO_00005 4404 3 Skin 0.09 protein_coding missense_variant MODERATE 1094G>C Arg365Pro
M0015512 PKNPECCO_00005 4657 5 Skin 0.16 protein_coding synonymous_variant LOW 1347G>A Val449Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term