Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1790
  Reference Plasmid   1111525849644833_bin.15__k141_91832
  Reference Plasmid Size   4081
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0016024 LBKPJGMF_00004 1668 3 Skin 1.00 protein_coding missense_variant MODERATE 1033A>G Thr345Ala
M0016025 LBKPJGMF_00004 1672 3 Skin 1.00 protein_coding synonymous_variant LOW 1029C>G Pro343Pro
M0016026 LBKPJGMF_00004 1963 3 Skin 1.00 protein_coding synonymous_variant LOW 738C>G Ala246Ala
M0016027 LBKPJGMF_00004 1966 3 Skin 1.00 protein_coding synonymous_variant LOW 735C>T His245His
M0016028 LBKPJGMF_00004 1995 3 Skin 1.00 protein_coding synonymous_variant LOW 706C>T Leu236Leu
M0016029 LBKPJGMF_00004 2029 3 Skin 1.00 protein_coding synonymous_variant LOW 672G>A Pro224Pro
M0016030 LBKPJGMF_00004 2075 3 Skin 1.00 protein_coding missense_variant MODERATE 626A>G His209Arg
M0016031 LBKPJGMF_00004 2140 3 Skin 1.00 protein_coding synonymous_variant LOW 561C>T Cys187Cys
M0016032 LBKPJGMF_00004 2191 3 Skin 1.00 protein_coding synonymous_variant LOW 510A>G Glu170Glu
M0016033 LBKPJGMF_00004 2350 3 Skin 1.00 protein_coding synonymous_variant LOW 351A>G Val117Val
M0016034 LBKPJGMF_00004 2472 3 Skin 1.00 protein_coding missense_variant MODERATE 229G>T Ala77Ser
M0016035 LBKPJGMF_00004 2473 3 Skin 1.00 protein_coding missense_variant MODERATE 228C>G Ile76Met
M0016036 LBKPJGMF_00004 2479 3 Skin 1.00 protein_coding synonymous_variant LOW 222T>C Asp74Asp
M0016037 LBKPJGMF_00004 2487 3 Skin 1.00 protein_coding missense_variant MODERATE 214G>C Glu72Gln
M0016038 LBKPJGMF_00004 2501 3 Skin 1.00 protein_coding missense_variant MODERATE 200G>A Gly67Asp
M0016039 LBKPJGMF_00004 2569 3 Skin 1.00 protein_coding synonymous_variant LOW 132G>A Ala44Ala
M0016040 LBKPJGMF_00004 2575 3 Skin 1.00 protein_coding synonymous_variant LOW 126C>T Pro42Pro
M0016041 LBKPJGMF_00004 2578 3 Skin 1.00 protein_coding synonymous_variant LOW 123G>A Leu41Leu
M0016042 LBKPJGMF_00004 2580 3 Skin 1.00 protein_coding synonymous_variant LOW 121T>C Leu41Leu
M0016043 LBKPJGMF_00003 2771 3 Skin 1.00 protein_coding upstream_gene_variant MODIFIER -1506A>C None
M0016044 LBKPJGMF_00005 2881 3 Skin 1.00 protein_coding missense_variant MODERATE 502G>A Glu168Lys
M0016045 LBKPJGMF_00005 2981 3 Skin 1.00 protein_coding synonymous_variant LOW 402C>T Asp134Asp
M0016046 LBKPJGMF_00005 2990 3 Skin 1.00 protein_coding synonymous_variant LOW 393G>A Ala131Ala
M0016047 LBKPJGMF_00005 2993 3 Skin 1.00 protein_coding synonymous_variant LOW 390G>T Pro130Pro
M0016048 LBKPJGMF_00005 2995 3 Skin 1.00 protein_coding missense_variant MODERATE 388C>T Pro130Ser
M0016049 LBKPJGMF_00005 2999 3 Skin 1.00 protein_coding synonymous_variant LOW 384T>C Gly128Gly
M0016050 LBKPJGMF_00005 3305 3 Skin 1.00 protein_coding synonymous_variant LOW 78T>C Arg26Arg
M0016051 LBKPJGMF_00005 3329 3 Skin 1.00 protein_coding missense_variant MODERATE 54C>A Asn18Lys
M0016052 LBKPJGMF_00005 3367 3 Skin 1.00 protein_coding missense_variant MODERATE 16G>A Ala6Thr
M0016053 LBKPJGMF_00006 3453 3 Skin 1.00 protein_coding synonymous_variant LOW 312C>T Leu104Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term