Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1795
  Reference Plasmid   1111525849644833_bin.27__k141_42743
  Reference Plasmid Size   3023
  Reference Plasmid GC Content   0.73
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0016120 ADELCBBM_00001 212 8 Skin 0.73 protein_coding missense_variant MODERATE 118C>T Leu40Phe
M0016121 ADELCBBM_00001 802 3 Skin 0.27 protein_coding synonymous_variant LOW 708T>C Ser236Ser
M0016122 ADELCBBM_00001 904 4 Skin 0.36 protein_coding synonymous_variant LOW 810C>G Ser270Ser
M0016123 ADELCBBM_00002 1227 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -191T>C None
M0016124 ADELCBBM_00002 1231 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -187G>T None
M0016125 ADELCBBM_00002 1234 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -184G>T None
M0016126 ADELCBBM_00002 1796 7 Skin 0.64 protein_coding missense_variant MODERATE 379A>C Met127Leu
M0016127 ADELCBBM_00002 1810 7 Skin 0.64 protein_coding synonymous_variant LOW 393G>C Gly131Gly
M0016128 ADELCBBM_00002 1831 7 Skin 0.64 protein_coding synonymous_variant LOW 414T>G Val138Val
M0016129 ADELCBBM_00002 1984 3 Skin 0.27 protein_coding synonymous_variant LOW 567A>G Gln189Gln
M0016130 ADELCBBM_00002 2221 3 Skin 0.27 protein_coding synonymous_variant LOW 804A>G Ala268Ala
M0016131 ADELCBBM_00002 2224 3 Skin 0.27 protein_coding missense_variant MODERATE 807G>C Lys269Asn
M0016132 ADELCBBM_00001 1167 3 Skin 0.27 protein_coding missense_variant MODERATE 1073A>G His358Arg
M0016133 ADELCBBM_00001 1170 3 Skin 0.27 protein_coding missense_variant MODERATE 1076C>G Ala359Gly
M0016134 ADELCBBM_00002 1525 3 Skin 0.27 protein_coding synonymous_variant LOW 108G>A Pro36Pro
M0016135 ADELCBBM_00002 1579 3 Skin 0.27 protein_coding synonymous_variant LOW 162C>G Pro54Pro
M0016136 ADELCBBM_00002 2396 4 Skin 0.36 protein_coding missense_variant MODERATE 979G>C Val327Leu
M0016137 ADELCBBM_00002 2401 4 Skin 0.36 protein_coding synonymous_variant LOW 984C>G Pro328Pro
M0016138 ADELCBBM_00002 2467 3 Skin 0.27 protein_coding synonymous_variant LOW 1050G>C Leu350Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term