Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1796
  Reference Plasmid   1111525849644871_bin.2__k141_174088
  Reference Plasmid Size   66789
  Reference Plasmid GC Content   0.61
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0016139 CIKFGLLJ_00019 15765 18 Skin 0.75 protein_coding missense_variant MODERATE 1447T>C Phe483Leu
M0016140 CIKFGLLJ_00024 20439 8 Skin 0.33 protein_coding missense_variant MODERATE 274G>A Gly92Arg
M0016141 CIKFGLLJ_00028 28906 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4718C>T None
M0016142 CIKFGLLJ_00035 31502 13 Skin 0.54 protein_coding missense_variant MODERATE 922A>G Ser308Gly
M0016143 CIKFGLLJ_00040 39572 9 Skin 0.38 protein_coding missense_variant MODERATE 493A>G Ile165Val
M0016144 CIKFGLLJ_00042 41524 3 Skin 0.13 protein_coding missense_variant MODERATE 1009G>A Gly337Arg
M0016145 CIKFGLLJ_00042 42208 9 Skin 0.38 protein_coding missense_variant MODERATE 325G>A Ala109Thr
M0016146 CIKFGLLJ_00063 66618 4 Skin 0.17 protein_coding missense_variant MODERATE 133A>G Ser45Gly
M0016147 CIKFGLLJ_00001 4659 8 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3799T>C None
M0016148 CIKFGLLJ_00015 10402 16 Skin 0.67 protein_coding missense_variant MODERATE 76C>T Pro26Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CIKFGLLJ_00015 BCY24049.1|CBM50 99.8 9.2e-301 1 435 1 1
CIKFGLLJ_00037 AOH45579.1|GH4 100 0 1 462 1 1
CIKFGLLJ_00038 AOH45578.1|GH38 100 0 1 1042 1 1
CIKFGLLJ_00041 AOH45575.1|GH125 100 0 1 431 1 1
CIKFGLLJ_00042 AOH45574.1|GH20 99.8 0 1 510 1 1
CIKFGLLJ_00059 BCY24096.1|GT35 100 0 1 788 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term