Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1797
  Reference Plasmid   1111525849645140_bin.15__k141_111675
  Reference Plasmid Size   1740
  Reference Plasmid GC Content   0.36
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0016149 OMKPJJMB_00002 42 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1144C>T None
M0016150 OMKPJJMB_00002 44 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1142A>G None
M0016151 OMKPJJMB_00002 45 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1141A>G None
M0016152 OMKPJJMB_00002 67 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1119G>C None
M0016153 OMKPJJMB_00002 71 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1115A>G None
M0016154 OMKPJJMB_00002 73 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1113G>A None
M0016155 OMKPJJMB_00002 80 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1106A>T None
M0016156 OMKPJJMB_00002 81 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1105G>A None
M0016157 OMKPJJMB_00002 82 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1104T>G None
M0016158 OMKPJJMB_00002 103 5 Skin 1.00 protein_coding upstream_gene_variant MODIFIER -1083A>T None
M0016159 OMKPJJMB_00002 104 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1082G>C None
M0016160 OMKPJJMB_00001 502 5 Skin 1.00 protein_coding missense_variant MODERATE 317C>A Pro106Gln
M0016161 OMKPJJMB_00001 597 5 Skin 1.00 protein_coding synonymous_variant LOW 222T>C Tyr74Tyr
M0016162 OMKPJJMB_00001 672 3 Skin 0.60 protein_coding missense_variant MODERATE 147T>A Asn49Lys
M0016163 OMKPJJMB_00001 888 5 Skin 1.00 protein_coding upstream_gene_variant MODIFIER -70G>A None
M0016164 OMKPJJMB_00002 1474 3 Skin 0.60 protein_coding missense_variant MODERATE 289A>C Ile97Leu
M0016165 OMKPJJMB_00001 921 4 Skin 0.80 protein_coding upstream_gene_variant MODIFIER -103C>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term