Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1801
  Reference Plasmid   1111525849645395_bin.14__k141_60821
  Reference Plasmid Size   20352
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0016270 LIPGGFND_00001 63 7 Skin 0.27 protein_coding synonymous_variant LOW 36A>C Ala12Ala
M0016271 LIPGGFND_00001 234 4 Skin 0.15 protein_coding synonymous_variant LOW 207C>T Arg69Arg
M0016272 LIPGGFND_00001 267 4 Skin 0.15 protein_coding synonymous_variant LOW 240G>C Thr80Thr
M0016273 LIPGGFND_00001 270 4 Skin 0.15 protein_coding synonymous_variant LOW 243C>T Leu81Leu
M0016274 LIPGGFND_00001 274 4 Skin 0.15 protein_coding missense_variant MODERATE 247C>T Pro83Ser
M0016275 LIPGGFND_00002 1183 6 Skin 0.23 protein_coding synonymous_variant LOW 525C>T Asp175Asp
M0016276 LIPGGFND_00003 2049 4 Skin 0.15 protein_coding synonymous_variant LOW 165G>C Leu55Leu
M0016277 LIPGGFND_00003 2274 9 Skin 0.35 protein_coding missense_variant MODERATE 390G>C Gln130His
M0016278 LIPGGFND_00003 2332 11 Skin 0.42 protein_coding synonymous_variant LOW 448C>T Leu150Leu
M0016279 LIPGGFND_00003 2345 11 Skin 0.42 protein_coding missense_variant MODERATE 461C>G Thr154Ser
M0016280 LIPGGFND_00003 2403 5 Skin 0.19 protein_coding synonymous_variant LOW 519T>A Arg173Arg
M0016281 LIPGGFND_00003 2404 5 Skin 0.19 protein_coding synonymous_variant LOW 520C>T Leu174Leu
M0016282 LIPGGFND_00003 2418 5 Skin 0.19 protein_coding synonymous_variant LOW 534C>A Ala178Ala
M0016283 LIPGGFND_00003 2483 11 Skin 0.42 protein_coding missense_variant MODERATE 599G>A Gly200Asp
M0016284 LIPGGFND_00003 2490 11 Skin 0.42 protein_coding synonymous_variant LOW 606T>C Arg202Arg
M0016285 LIPGGFND_00004 2742 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -25C>T None
M0016286 LIPGGFND_00004 2853 6 Skin 0.23 protein_coding synonymous_variant LOW 87C>A Ile29Ile
M0016287 LIPGGFND_00004 2856 6 Skin 0.23 protein_coding synonymous_variant LOW 90A>G Lys30Lys
M0016288 LIPGGFND_00004 2865 6 Skin 0.23 protein_coding synonymous_variant LOW 99C>T His33His
M0016289 LIPGGFND_00004 2868 6 Skin 0.23 protein_coding synonymous_variant LOW 102A>G Val34Val
M0016290 LIPGGFND_00004 2901 6 Skin 0.23 protein_coding synonymous_variant LOW 135G>C Ala45Ala
M0016291 LIPGGFND_00004 3150 10 Skin 0.38 protein_coding synonymous_variant LOW 384G>A Ala128Ala
M0016292 LIPGGFND_00004 3170 16 Skin 0.62 protein_coding missense_variant MODERATE 404G>A Gly135Asp
M0016293 LIPGGFND_00004 3186 11 Skin 0.42 protein_coding synonymous_variant LOW 420T>G Gly140Gly
M0016294 LIPGGFND_00004 3258 10 Skin 0.38 protein_coding synonymous_variant LOW 492C>T Arg164Arg
M0016295 LIPGGFND_00004 3276 10 Skin 0.38 protein_coding synonymous_variant LOW 510G>A Val170Val
M0016296 LIPGGFND_00004 3321 10 Skin 0.38 protein_coding synonymous_variant LOW 555C>A Ala185Ala
M0016297 LIPGGFND_00004 3381 11 Skin 0.42 protein_coding synonymous_variant LOW 615T>C Asn205Asn
M0016298 LIPGGFND_00004 3408 11 Skin 0.42 protein_coding synonymous_variant LOW 642T>C Tyr214Tyr
M0016299 LIPGGFND_00004 3474 9 Skin 0.35 protein_coding synonymous_variant LOW 708T>C Tyr236Tyr
M0016300 LIPGGFND_00004 3520 9 Skin 0.35 protein_coding missense_variant MODERATE 754G>A Val252Met
M0016301 LIPGGFND_00004 3531 9 Skin 0.35 protein_coding synonymous_variant LOW 765G>A Glu255Glu
M0016302 LIPGGFND_00005 3796 14 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -83C>T None
M0016303 LIPGGFND_00005 4277 14 Skin 0.54 protein_coding synonymous_variant LOW 399T>C Asn133Asn
M0016304 LIPGGFND_00005 4360 13 Skin 0.50 protein_coding missense_variant MODERATE 482C>A Thr161Lys
M0016305 LIPGGFND_00005 4365 13 Skin 0.50 protein_coding missense_variant MODERATE 487G>A Val163Ile
M0016306 LIPGGFND_00005 4367 13 Skin 0.50 protein_coding synonymous_variant LOW 489T>C Val163Val
M0016307 LIPGGFND_00005 4385 13 Skin 0.50 protein_coding synonymous_variant LOW 507C>T Phe169Phe
M0016308 LIPGGFND_00005 4432 13 Skin 0.50 protein_coding missense_variant MODERATE 554A>C Glu185Ala
M0016309 LIPGGFND_00005 4447 13 Skin 0.50 protein_coding missense_variant MODERATE 569G>A Arg190Gln
M0016310 LIPGGFND_00005 4472 13 Skin 0.50 protein_coding synonymous_variant LOW 594C>G Pro198Pro
M0016311 LIPGGFND_00005 4481 13 Skin 0.50 protein_coding synonymous_variant LOW 603C>T Ala201Ala
M0016312 LIPGGFND_00005 4502 14 Skin 0.54 protein_coding synonymous_variant LOW 624T>C Tyr208Tyr
M0016313 LIPGGFND_00005 4505 14 Skin 0.54 protein_coding synonymous_variant LOW 627C>A Arg209Arg
M0016314 LIPGGFND_00005 4520 14 Skin 0.54 protein_coding synonymous_variant LOW 642T>C Phe214Phe
M0016315 LIPGGFND_00005 4526 14 Skin 0.54 protein_coding synonymous_variant LOW 648T>C Asp216Asp
M0016316 LIPGGFND_00005 4535 14 Skin 0.54 protein_coding synonymous_variant LOW 657T>G Pro219Pro
M0016317 LIPGGFND_00005 4538 14 Skin 0.54 protein_coding synonymous_variant LOW 660A>C Ala220Ala
M0016318 LIPGGFND_00005 4541 14 Skin 0.54 protein_coding synonymous_variant LOW 663T>C Tyr221Tyr
M0016319 LIPGGFND_00005 4569 14 Skin 0.54 protein_coding missense_variant MODERATE 691G>C Ala231Pro
M0016320 LIPGGFND_00005 4571 14 Skin 0.54 protein_coding synonymous_variant LOW 693C>A Ala231Ala
M0016321 LIPGGFND_00005 4574 14 Skin 0.54 protein_coding synonymous_variant LOW 696A>C Pro232Pro
M0016322 LIPGGFND_00005 4577 14 Skin 0.54 protein_coding synonymous_variant LOW 699G>A Val233Val
M0016323 LIPGGFND_00008 6920 18 Skin 0.69 protein_coding upstream_gene_variant MODIFIER -83T>C None
M0016324 LIPGGFND_00010 9452 19 Skin 0.73 protein_coding synonymous_variant LOW 952T>C Leu318Leu
M0016325 LIPGGFND_00002 1438 6 Skin 0.23 protein_coding synonymous_variant LOW 780T>C Arg260Arg
M0016326 LIPGGFND_00002 1465 6 Skin 0.23 protein_coding synonymous_variant LOW 807G>C Val269Val
M0016327 LIPGGFND_00002 1565 3 Skin 0.12 protein_coding missense_variant MODERATE 907G>A Gly303Ser
M0016328 LIPGGFND_00002 1735 7 Skin 0.27 protein_coding synonymous_variant LOW 1077A>G Gly359Gly
M0016329 LIPGGFND_00002 1744 7 Skin 0.27 protein_coding synonymous_variant LOW 1086C>T Ser362Ser
M0016330 LIPGGFND_00002 1766 7 Skin 0.27 protein_coding missense_variant MODERATE 1108C>T Pro370Ser
M0016331 LIPGGFND_00002 1768 7 Skin 0.27 protein_coding synonymous_variant LOW 1110C>G Pro370Pro
M0016332 LIPGGFND_00002 1774 7 Skin 0.27 protein_coding synonymous_variant LOW 1116C>T Pro372Pro
M0016333 LIPGGFND_00002 1777 7 Skin 0.27 protein_coding synonymous_variant LOW 1119G>C Ala373Ala
M0016334 LIPGGFND_00002 1778 7 Skin 0.27 protein_coding synonymous_variant LOW 1120C>T Leu374Leu
M0016335 LIPGGFND_00002 1804 7 Skin 0.27 protein_coding synonymous_variant LOW 1146A>G Leu382Leu
M0016336 LIPGGFND_00002 1832 7 Skin 0.27 protein_coding missense_variant MODERATE 1174G>A Val392Ile
M0016337 LIPGGFND_00003 2678 3 Skin 0.12 protein_coding missense_variant MODERATE 794G>A Arg265His
M0016338 LIPGGFND_00004 3711 8 Skin 0.31 protein_coding missense_variant MODERATE 945G>C Glu315Asp
M0016339 LIPGGFND_00005 4670 4 Skin 0.15 protein_coding synonymous_variant LOW 792A>T Pro264Pro
M0016340 LIPGGFND_00005 4703 4 Skin 0.15 protein_coding synonymous_variant LOW 825C>T His275His
M0016341 LIPGGFND_00005 4721 4 Skin 0.15 protein_coding synonymous_variant LOW 843C>A Ala281Ala
M0016342 LIPGGFND_00005 4724 4 Skin 0.15 protein_coding synonymous_variant LOW 846A>G Pro282Pro
M0016343 LIPGGFND_00005 4750 4 Skin 0.15 protein_coding missense_variant MODERATE 872A>G Gln291Arg
M0016344 LIPGGFND_00006 4781 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -707C>G None
M0016345 LIPGGFND_00006 4784 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -704C>G None
M0016346 LIPGGFND_00006 4791 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -697G>A None
M0016347 LIPGGFND_00006 4809 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -679T>G None
M0016348 LIPGGFND_00004 3633 6 Skin 0.23 protein_coding synonymous_variant LOW 867G>A Glu289Glu
M0016349 LIPGGFND_00004 3642 6 Skin 0.23 protein_coding synonymous_variant LOW 876G>A Glu292Glu
M0016350 LIPGGFND_00011 10993 5 Skin 0.19 protein_coding synonymous_variant LOW 594G>A Pro198Pro
M0016351 LIPGGFND_00011 11000 16 Skin 0.62 protein_coding missense_variant MODERATE 587A>G Asn196Ser
M0016352 LIPGGFND_00011 11089 11 Skin 0.42 protein_coding synonymous_variant LOW 498A>G Glu166Glu
M0016353 LIPGGFND_00011 11133 13 Skin 0.50 protein_coding missense_variant MODERATE 454G>A Val152Met
M0016354 LIPGGFND_00011 11140 13 Skin 0.50 protein_coding synonymous_variant LOW 447A>G Glu149Glu
M0016355 LIPGGFND_00011 11209 11 Skin 0.42 protein_coding synonymous_variant LOW 378T>C Ile126Ile
M0016356 LIPGGFND_00011 11239 11 Skin 0.42 protein_coding synonymous_variant LOW 348A>G Glu116Glu
M0016357 LIPGGFND_00011 11242 11 Skin 0.42 protein_coding synonymous_variant LOW 345C>T Pro115Pro
M0016358 LIPGGFND_00011 11244 11 Skin 0.42 protein_coding missense_variant MODERATE 343C>A Pro115Thr
M0016359 LIPGGFND_00011 11458 9 Skin 0.35 protein_coding synonymous_variant LOW 129C>A Ile43Ile
M0016360 LIPGGFND_00011 11497 8 Skin 0.31 protein_coding synonymous_variant LOW 90C>T Ala30Ala
M0016361 LIPGGFND_00010 11592 7 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1189C>T None
M0016362 LIPGGFND_00010 11608 7 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1205C>A None
M0016363 LIPGGFND_00018 19991 4 Skin 0.15 protein_coding missense_variant MODERATE 342T>A Asp114Glu
M0016364 LIPGGFND_00018 19994 7 Skin 0.27 protein_coding synonymous_variant LOW 339T>C Gly113Gly
M0016365 LIPGGFND_00018 19997 7 Skin 0.27 protein_coding synonymous_variant LOW 336T>C Gly112Gly
M0016366 LIPGGFND_00018 20316 7 Skin 0.27 protein_coding missense_variant MODERATE 17C>A Ser6Tyr
M0016367 LIPGGFND_00012 11854 3 Skin 0.12 protein_coding synonymous_variant LOW 1038T>C Phe346Phe
M0016368 LIPGGFND_00012 12055 6 Skin 0.23 protein_coding synonymous_variant LOW 837C>T Phe279Phe
M0016369 LIPGGFND_00012 12064 6 Skin 0.23 protein_coding synonymous_variant LOW 828C>T Asp276Asp
M0016370 LIPGGFND_00012 12217 9 Skin 0.35 protein_coding synonymous_variant LOW 675T>C Tyr225Tyr
M0016371 LIPGGFND_00012 12265 9 Skin 0.35 protein_coding synonymous_variant LOW 627A>G Val209Val
M0016372 LIPGGFND_00012 12268 9 Skin 0.35 protein_coding synonymous_variant LOW 624C>G Ser208Ser
M0016373 LIPGGFND_00012 12292 9 Skin 0.35 protein_coding synonymous_variant LOW 600A>G Glu200Glu
M0016374 LIPGGFND_00013 13520 3 Skin 0.12 protein_coding synonymous_variant LOW 453A>G Gly151Gly
M0016375 LIPGGFND_00013 13527 3 Skin 0.12 protein_coding missense_variant MODERATE 460A>C Thr154Pro
M0016376 LIPGGFND_00013 13668 6 Skin 0.23 protein_coding missense_variant MODERATE 601A>G Thr201Ala
M0016377 LIPGGFND_00013 13697 6 Skin 0.23 protein_coding synonymous_variant LOW 630C>G Ser210Ser
M0016378 LIPGGFND_00013 13718 6 Skin 0.23 protein_coding synonymous_variant LOW 651C>A Pro217Pro
M0016379 LIPGGFND_00013 13724 6 Skin 0.23 protein_coding synonymous_variant LOW 657C>T Arg219Arg
M0016380 LIPGGFND_00013 13733 6 Skin 0.23 protein_coding synonymous_variant LOW 666T>C Ile222Ile
M0016381 LIPGGFND_00013 13739 6 Skin 0.23 protein_coding synonymous_variant LOW 672A>G Val224Val
M0016382 LIPGGFND_00013 13748 6 Skin 0.23 protein_coding synonymous_variant LOW 681T>C Phe227Phe
M0016383 LIPGGFND_00013 13805 6 Skin 0.23 protein_coding synonymous_variant LOW 738A>G Gln246Gln
M0016384 LIPGGFND_00014 14157 8 Skin 0.31 protein_coding synonymous_variant LOW 45C>G Ser15Ser
M0016385 LIPGGFND_00014 14511 5 Skin 0.19 protein_coding synonymous_variant LOW 399T>C Ser133Ser
M0016386 LIPGGFND_00014 14571 4 Skin 0.15 protein_coding synonymous_variant LOW 459T>C Thr153Thr
M0016387 LIPGGFND_00014 14985 5 Skin 0.19 protein_coding synonymous_variant LOW 873T>C Ile291Ile
M0016388 LIPGGFND_00014 14988 5 Skin 0.19 protein_coding synonymous_variant LOW 876G>C Leu292Leu
M0016389 LIPGGFND_00015 15371 5 Skin 0.19 protein_coding missense_variant MODERATE 1220G>A Arg407Gln
M0016390 LIPGGFND_00015 15400 5 Skin 0.19 protein_coding synonymous_variant LOW 1191G>A Ala397Ala
M0016391 LIPGGFND_00015 15429 5 Skin 0.19 protein_coding synonymous_variant LOW 1162T>C Leu388Leu
M0016392 LIPGGFND_00015 15444 5 Skin 0.19 protein_coding missense_variant MODERATE 1147G>C Ala383Pro
M0016393 LIPGGFND_00015 15619 6 Skin 0.23 protein_coding synonymous_variant LOW 972C>T Val324Val
M0016394 LIPGGFND_00015 15652 5 Skin 0.19 protein_coding synonymous_variant LOW 939A>G Leu313Leu
M0016395 LIPGGFND_00015 15841 3 Skin 0.12 protein_coding synonymous_variant LOW 750T>G Pro250Pro
M0016396 LIPGGFND_00015 15865 3 Skin 0.12 protein_coding synonymous_variant LOW 726C>G Gly242Gly
M0016397 LIPGGFND_00015 15871 3 Skin 0.12 protein_coding synonymous_variant LOW 720G>A Glu240Glu
M0016398 LIPGGFND_00016 16999 3 Skin 0.12 protein_coding synonymous_variant LOW 159T>C Ser53Ser
M0016399 LIPGGFND_00016 17209 4 Skin 0.15 protein_coding synonymous_variant LOW 369T>C Ala123Ala
M0016400 LIPGGFND_00016 17983 3 Skin 0.12 protein_coding synonymous_variant LOW 1143C>T Arg381Arg
M0016401 LIPGGFND_00016 17998 3 Skin 0.12 protein_coding synonymous_variant LOW 1158G>C Val386Val
M0016402 LIPGGFND_00016 18346 4 Skin 0.15 protein_coding synonymous_variant LOW 1506G>C Ala502Ala
M0016403 LIPGGFND_00016 18442 3 Skin 0.12 protein_coding synonymous_variant LOW 1602T>C Ser534Ser
M0016404 LIPGGFND_00016 18715 5 Skin 0.19 protein_coding synonymous_variant LOW 1875T>C Thr625Thr
M0016405 LIPGGFND_00015 18929 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2339C>T None
M0016406 LIPGGFND_00012 11803 5 Skin 0.19 protein_coding synonymous_variant LOW 1089G>A Pro363Pro
M0016407 LIPGGFND_00012 12574 6 Skin 0.23 protein_coding synonymous_variant LOW 318G>T Thr106Thr
M0016408 LIPGGFND_00012 12586 6 Skin 0.23 protein_coding synonymous_variant LOW 306C>T Phe102Phe
M0016409 LIPGGFND_00014 14724 5 Skin 0.19 protein_coding synonymous_variant LOW 612A>G Val204Val
M0016410 LIPGGFND_00014 14904 3 Skin 0.12 protein_coding synonymous_variant LOW 792T>C Val264Val
M0016411 LIPGGFND_00015 15964 3 Skin 0.12 protein_coding synonymous_variant LOW 627G>A Glu209Glu
M0016412 LIPGGFND_00015 15994 3 Skin 0.12 protein_coding synonymous_variant LOW 597G>A Ala199Ala
M0016413 LIPGGFND_00012 16732 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3841A>G None
M0016414 LIPGGFND_00012 16759 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3868C>G None
M0016415 LIPGGFND_00016 18116 3 Skin 0.12 protein_coding synonymous_variant LOW 1276C>T Leu426Leu
M0016416 LIPGGFND_00001 326 6 Skin 0.23 protein_coding missense_variant MODERATE 299T>C Ile100Thr
M0016417 LIPGGFND_00002 1666 5 Skin 0.19 protein_coding synonymous_variant LOW 1008G>C Leu336Leu
M0016418 LIPGGFND_00002 1667 5 Skin 0.19 protein_coding missense_variant MODERATE 1009G>A Glu337Lys
M0016419 LIPGGFND_00002 1672 5 Skin 0.19 protein_coding synonymous_variant LOW 1014C>G Ala338Ala
M0016420 LIPGGFND_00002 1678 5 Skin 0.19 protein_coding synonymous_variant LOW 1020A>G Gln340Gln
M0016421 LIPGGFND_00002 1712 5 Skin 0.19 protein_coding synonymous_variant LOW 1054C>T Leu352Leu
M0016422 LIPGGFND_00003 1932 5 Skin 0.19 protein_coding synonymous_variant LOW 48C>T Arg16Arg
M0016423 LIPGGFND_00004 3057 6 Skin 0.23 protein_coding synonymous_variant LOW 291C>T His97His
M0016424 LIPGGFND_00001 396 3 Skin 0.12 protein_coding missense_variant MODERATE 369C>G Ser123Arg
M0016425 LIPGGFND_00001 438 4 Skin 0.15 protein_coding synonymous_variant LOW 411T>C Phe137Phe
M0016426 LIPGGFND_00002 802 3 Skin 0.12 protein_coding synonymous_variant LOW 144T>C Gly48Gly
M0016427 LIPGGFND_00003 2458 8 Skin 0.31 protein_coding missense_variant MODERATE 574G>A Asp192Asn
M0016428 LIPGGFND_00012 12139 5 Skin 0.19 protein_coding synonymous_variant LOW 753G>C Val251Val
M0016429 LIPGGFND_00012 12145 5 Skin 0.19 protein_coding synonymous_variant LOW 747C>T Ala249Ala
M0016430 LIPGGFND_00012 12484 3 Skin 0.12 protein_coding synonymous_variant LOW 408G>C Gly136Gly
M0016431 LIPGGFND_00012 12493 3 Skin 0.12 protein_coding synonymous_variant LOW 399A>C Gly133Gly
M0016432 LIPGGFND_00010 15241 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4838G>C None
M0016433 LIPGGFND_00015 15283 3 Skin 0.12 protein_coding synonymous_variant LOW 1308A>G Pro436Pro
M0016434 LIPGGFND_00011 10919 3 Skin 0.12 protein_coding missense_variant MODERATE 668T>C Val223Ala
M0016435 LIPGGFND_00011 11293 4 Skin 0.15 protein_coding synonymous_variant LOW 294C>G Leu98Leu
M0016436 LIPGGFND_00011 11308 4 Skin 0.15 protein_coding synonymous_variant LOW 279A>G Val93Val
M0016437 LIPGGFND_00011 11339 4 Skin 0.15 protein_coding missense_variant MODERATE 248A>G Lys83Arg
M0016438 LIPGGFND_00011 11342 4 Skin 0.15 protein_coding missense_variant MODERATE 245T>C Val82Ala
M0016439 LIPGGFND_00012 12388 4 Skin 0.15 protein_coding synonymous_variant LOW 504T>C Val168Val
M0016440 LIPGGFND_00012 12421 4 Skin 0.15 protein_coding synonymous_variant LOW 471G>C Leu157Leu
M0016441 LIPGGFND_00014 14961 3 Skin 0.12 protein_coding synonymous_variant LOW 849G>C Val283Val
M0016442 LIPGGFND_00002 706 3 Skin 0.12 protein_coding synonymous_variant LOW 48G>A Val16Val
M0016443 LIPGGFND_00003 1899 3 Skin 0.12 protein_coding synonymous_variant LOW 15C>T Ile5Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term