Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1809
  Reference Plasmid   1111525849645504_bin.4__k141_81697
  Reference Plasmid Size   26229
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0017237 MBKECFAD_00001 52 9 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -683A>C None
M0017238 MBKECFAD_00001 1172 3 Skin 0.03 protein_coding synonymous_variant LOW 438C>G Val146Val
M0017239 MBKECFAD_00001 1214 3 Skin 0.03 protein_coding synonymous_variant LOW 480T>G Val160Val
M0017240 MBKECFAD_00001 1394 3 Skin 0.03 protein_coding synonymous_variant LOW 660G>C Ala220Ala
M0017241 MBKECFAD_00001 1397 5 Skin 0.04 protein_coding synonymous_variant LOW 663G>A Lys221Lys
M0017242 MBKECFAD_00001 1400 3 Skin 0.03 protein_coding synonymous_variant LOW 666A>G Lys222Lys
M0017243 MBKECFAD_00001 1403 3 Skin 0.03 protein_coding synonymous_variant LOW 669C>A Ala223Ala
M0017244 MBKECFAD_00018 26108 7 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3435C>G None
M0017245 MBKECFAD_00001 1436 3 Skin 0.03 protein_coding synonymous_variant LOW 702C>G Ser234Ser
M0017246 MBKECFAD_00001 1445 3 Skin 0.03 protein_coding synonymous_variant LOW 711A>G Glu237Glu
M0017247 MBKECFAD_00001 1457 4 Skin 0.03 protein_coding synonymous_variant LOW 723T>C Gly241Gly
M0017248 MBKECFAD_00001 1466 3 Skin 0.03 protein_coding synonymous_variant LOW 732A>G Glu244Glu
M0017249 MBKECFAD_00008 10733 24 Skin 0.21 protein_coding missense_variant MODERATE 550A>C Ser184Arg
M0017250 MBKECFAD_00021 24995 4 Skin 0.03 protein_coding missense_variant MODERATE 847G>C Val283Leu
M0017251 MBKECFAD_00021 25011 4 Skin 0.03 protein_coding synonymous_variant LOW 831G>A Lys277Lys
M0017252 MBKECFAD_00021 25047 4 Skin 0.03 protein_coding synonymous_variant LOW 795C>T Asp265Asp
M0017253 MBKECFAD_00021 25059 4 Skin 0.03 protein_coding synonymous_variant LOW 783T>C Ile261Ile
M0017254 MBKECFAD_00021 25065 4 Skin 0.03 protein_coding synonymous_variant LOW 777T>C Arg259Arg
M0017255 MBKECFAD_00021 25071 4 Skin 0.03 protein_coding synonymous_variant LOW 771C>T Val257Val
M0017256 MBKECFAD_00021 25077 4 Skin 0.03 protein_coding synonymous_variant LOW 765C>T Asp255Asp
M0017257 MBKECFAD_00021 25095 4 Skin 0.03 protein_coding synonymous_variant LOW 747T>C Ala249Ala
M0017258 MBKECFAD_00021 25104 4 Skin 0.03 protein_coding synonymous_variant LOW 738C>G Leu246Leu
M0017259 MBKECFAD_00021 25119 4 Skin 0.03 protein_coding synonymous_variant LOW 723C>G Arg241Arg
M0017260 MBKECFAD_00021 25134 4 Skin 0.03 protein_coding synonymous_variant LOW 708T>C Gly236Gly
M0017261 MBKECFAD_00021 25149 4 Skin 0.03 protein_coding synonymous_variant LOW 693C>G Thr231Thr
M0017262 MBKECFAD_00021 25155 4 Skin 0.03 protein_coding synonymous_variant LOW 687C>T Ile229Ile
M0017263 MBKECFAD_00021 25167 4 Skin 0.03 protein_coding synonymous_variant LOW 675T>C Gly225Gly
M0017264 MBKECFAD_00021 25184 4 Skin 0.03 protein_coding synonymous_variant LOW 658T>C Leu220Leu
M0017265 MBKECFAD_00021 25383 6 Skin 0.05 protein_coding synonymous_variant LOW 459T>G Ala153Ala
M0017266 MBKECFAD_00021 25416 6 Skin 0.05 protein_coding synonymous_variant LOW 426G>C Ala142Ala
M0017267 MBKECFAD_00021 25428 6 Skin 0.05 protein_coding synonymous_variant LOW 414T>C Arg138Arg
M0017268 MBKECFAD_00021 25464 6 Skin 0.05 protein_coding synonymous_variant LOW 378T>C Thr126Thr
M0017269 MBKECFAD_00021 25500 9 Skin 0.08 protein_coding synonymous_variant LOW 342T>C Asp114Asp
M0017270 MBKECFAD_00021 25542 8 Skin 0.07 protein_coding synonymous_variant LOW 300A>G Lys100Lys
M0017271 MBKECFAD_00021 25590 8 Skin 0.07 protein_coding synonymous_variant LOW 252A>G Ala84Ala
M0017272 MBKECFAD_00021 25602 8 Skin 0.07 protein_coding synonymous_variant LOW 240A>G Val80Val
M0017273 MBKECFAD_00021 25614 8 Skin 0.07 protein_coding synonymous_variant LOW 228G>A Ala76Ala
M0017274 MBKECFAD_00021 25617 8 Skin 0.07 protein_coding synonymous_variant LOW 225T>C Gly75Gly
M0017275 MBKECFAD_00021 25628 8 Skin 0.07 protein_coding synonymous_variant LOW 214C>T Leu72Leu
M0017276 MBKECFAD_00021 25647 8 Skin 0.07 protein_coding synonymous_variant LOW 195T>C Thr65Thr
M0017277 MBKECFAD_00021 25665 8 Skin 0.07 protein_coding synonymous_variant LOW 177T>C Gly59Gly
M0017278 MBKECFAD_00021 25677 8 Skin 0.07 protein_coding synonymous_variant LOW 165T>C Ala55Ala
M0017279 MBKECFAD_00021 25751 8 Skin 0.07 protein_coding synonymous_variant LOW 91C>T Leu31Leu
M0017280 MBKECFAD_00007 8854 3 Skin 0.03 protein_coding synonymous_variant LOW 1020C>T Gly340Gly
M0017281 MBKECFAD_00007 8867 3 Skin 0.03 protein_coding missense_variant MODERATE 1007T>C Ile336Thr
M0017282 MBKECFAD_00010 13293 7 Skin 0.06 protein_coding missense_variant MODERATE 836G>C Arg279Pro
M0017283 MBKECFAD_00021 25248 5 Skin 0.04 protein_coding synonymous_variant LOW 594T>C Arg198Arg
M0017284 MBKECFAD_00021 25257 5 Skin 0.04 protein_coding missense_variant MODERATE 585C>G His195Gln
M0017285 MBKECFAD_00021 25266 5 Skin 0.04 protein_coding synonymous_variant LOW 576G>A Glu192Glu
M0017286 MBKECFAD_00021 25278 5 Skin 0.04 protein_coding synonymous_variant LOW 564A>G Glu188Glu
M0017287 MBKECFAD_00021 25334 5 Skin 0.04 protein_coding synonymous_variant LOW 508C>T Leu170Leu
M0017288 MBKECFAD_00021 25347 5 Skin 0.04 protein_coding synonymous_variant LOW 495G>A Glu165Glu
M0017289 MBKECFAD_00021 25395 5 Skin 0.04 protein_coding synonymous_variant LOW 447A>G Glu149Glu
M0017290 MBKECFAD_00021 25431 5 Skin 0.04 protein_coding synonymous_variant LOW 411C>G Ala137Ala
M0017291 MBKECFAD_00004 5522 4 Skin 0.03 protein_coding missense_variant MODERATE 95C>A Pro32His
M0017292 MBKECFAD_00001 1556 3 Skin 0.03 protein_coding synonymous_variant LOW 822G>C Ser274Ser
M0017293 MBKECFAD_00001 1583 3 Skin 0.03 protein_coding synonymous_variant LOW 849T>C Gly283Gly
M0017294 MBKECFAD_00001 1586 3 Skin 0.03 protein_coding synonymous_variant LOW 852T>G Val284Val
M0017295 MBKECFAD_00021 24435 5 Skin 0.04 protein_coding synonymous_variant LOW 1407A>G Lys469Lys
M0017296 MBKECFAD_00021 25503 3 Skin 0.03 protein_coding synonymous_variant LOW 339T>C Ile113Ile
M0017297 MBKECFAD_00005 5794 4 Skin 0.03 protein_coding synonymous_variant LOW 483A>C Pro161Pro
M0017298 MBKECFAD_00013 15947 3 Skin 0.03 protein_coding synonymous_variant LOW 972C>G Leu324Leu
M0017299 MBKECFAD_00013 15948 3 Skin 0.03 protein_coding synonymous_variant LOW 973C>T Leu325Leu
M0017300 MBKECFAD_00013 15960 3 Skin 0.03 protein_coding missense_variant MODERATE 985A>G Thr329Ala
M0017301 MBKECFAD_00013 15977 3 Skin 0.03 protein_coding synonymous_variant LOW 1002A>G Ala334Ala
M0017302 MBKECFAD_00013 15986 3 Skin 0.03 protein_coding synonymous_variant LOW 1011T>C Ile337Ile
M0017303 MBKECFAD_00003 4186 4 Skin 0.03 protein_coding missense_variant MODERATE 224T>C Phe75Ser
M0017304 MBKECFAD_00003 4187 4 Skin 0.03 protein_coding missense_variant MODERATE 223T>C Phe75Leu
M0017305 MBKECFAD_00001 1277 3 Skin 0.03 protein_coding synonymous_variant LOW 543T>C Ile181Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
MBKECFAD_00008 1.B.25.1.14 70.3 2.7e-161 14 414 0.9686 0.9644 1 Channels/Pores 1.B β-Barrel Porins 1.B.25 The Outer Membrane Porin (Opr) Family