Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1811
  Reference Plasmid   1111525849645752_bin.45__k141_32227
  Reference Plasmid Size   6939
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0141192 PEANLAFE_00002 2224 3 Vaginal 0.75 protein_coding missense_variant MODERATE 460G>A Ala154Thr
M0141193 PEANLAFE_00002 2237 3 Vaginal 0.75 protein_coding synonymous_variant LOW 447G>T Gly149Gly
M0141194 PEANLAFE_00002 2240 3 Vaginal 0.75 protein_coding synonymous_variant LOW 444C>T Asn148Asn
M0141195 PEANLAFE_00002 2249 3 Vaginal 0.75 protein_coding missense_variant MODERATE 435T>G Ile145Met
M0141196 PEANLAFE_00002 2255 3 Vaginal 0.75 protein_coding synonymous_variant LOW 429T>C Ile143Ile
M0141197 PEANLAFE_00001 2721 3 Vaginal 0.75 protein_coding upstream_gene_variant MODIFIER -2097C>T None
M0141198 PEANLAFE_00001 2742 3 Vaginal 0.75 protein_coding upstream_gene_variant MODIFIER -2118C>T None
M0141199 PEANLAFE_00001 3340 3 Vaginal 0.75 protein_coding upstream_gene_variant MODIFIER -2716T>C None
M0141200 PEANLAFE_00001 3346 3 Vaginal 0.75 protein_coding upstream_gene_variant MODIFIER -2722C>A None
M0141201 PEANLAFE_00004 3424 3 Vaginal 0.75 protein_coding stop_gained HIGH 27G>A Trp9*
M0141202 PEANLAFE_00004 3450 4 Vaginal 1.00 protein_coding missense_variant MODERATE 53T>A Ile18Asn
M0141203 PEANLAFE_00004 3459 3 Vaginal 0.75 protein_coding missense_variant MODERATE 62G>A Gly21Glu
M0141204 PEANLAFE_00004 3464 3 Vaginal 0.75 protein_coding missense_variant MODERATE 67T>C Ser23Pro
M0141205 PEANLAFE_00004 3474 3 Vaginal 0.75 protein_coding missense_variant MODERATE 77G>C Arg26Thr
M0141206 PEANLAFE_00004 3476 3 Vaginal 0.75 protein_coding missense_variant MODERATE 79G>A Ala27Thr
M0141207 PEANLAFE_00004 3511 3 Vaginal 0.75 protein_coding synonymous_variant LOW 114G>A Lys38Lys
M0141208 PEANLAFE_00004 3546 4 Vaginal 1.00 protein_coding missense_variant MODERATE 149T>A Ile50Lys
M0141209 PEANLAFE_00004 3575 3 Vaginal 0.75 protein_coding stop_lost&splice_region_variant HIGH 178T>A Ter60Lysext*?
M0141210 PEANLAFE_00005 3601 4 Vaginal 1.00 protein_coding missense_variant MODERATE 17G>T Cys6Phe
M0141211 PEANLAFE_00005 3620 4 Vaginal 1.00 protein_coding synonymous_variant LOW 36G>A Lys12Lys
M0141212 PEANLAFE_00006 3838 3 Vaginal 0.75 protein_coding synonymous_variant LOW 321C>T Ile107Ile
M0141213 PEANLAFE_00006 3863 4 Vaginal 1.00 protein_coding missense_variant MODERATE 296C>A Ala99Asp
M0141214 PEANLAFE_00006 4062 3 Vaginal 0.75 protein_coding synonymous_variant LOW 97C>T Leu33Leu
M0141215 PEANLAFE_00008 4532 3 Vaginal 0.75 protein_coding missense_variant MODERATE 19A>G Ser7Gly
M0141216 PEANLAFE_00008 4613 3 Vaginal 0.75 protein_coding missense_variant MODERATE 100T>C Tyr34His
M0141217 PEANLAFE_00010 5077 3 Vaginal 0.75 protein_coding synonymous_variant LOW 612A>G Lys204Lys
M0141218 PEANLAFE_00010 5292 3 Vaginal 0.75 protein_coding synonymous_variant LOW 397T>C Leu133Leu
M0141219 PEANLAFE_00010 5331 3 Vaginal 0.75 protein_coding missense_variant MODERATE 358A>G Thr120Ala
M0141220 PEANLAFE_00010 5439 3 Vaginal 0.75 protein_coding synonymous_variant LOW 250C>T Leu84Leu
M0141221 PEANLAFE_00010 5525 3 Vaginal 0.75 protein_coding missense_variant MODERATE 164T>C Ile55Thr
M0141222 PEANLAFE_00010 5664 3 Vaginal 0.75 protein_coding missense_variant MODERATE 25A>T Thr9Ser
M0141223 PEANLAFE_00011 5692 3 Vaginal 0.75 protein_coding splice_region_variant&stop_retained_variant LOW 243G>A Ter81Ter
M0141224 PEANLAFE_00011 5728 3 Vaginal 0.75 protein_coding synonymous_variant LOW 207A>G Arg69Arg
M0141225 PEANLAFE_00011 5730 3 Vaginal 0.75 protein_coding missense_variant MODERATE 205A>G Arg69Gly
M0141226 PEANLAFE_00011 5734 3 Vaginal 0.75 protein_coding synonymous_variant LOW 201T>G Ser67Ser
M0141227 PEANLAFE_00011 5738 3 Vaginal 0.75 protein_coding missense_variant MODERATE 197G>T Trp66Leu
M0141228 PEANLAFE_00011 5776 3 Vaginal 0.75 protein_coding synonymous_variant LOW 159T>C Ala53Ala
M0141229 PEANLAFE_00011 5777 3 Vaginal 0.75 protein_coding missense_variant MODERATE 158C>T Ala53Val
M0141230 PEANLAFE_00011 5780 3 Vaginal 0.75 protein_coding missense_variant MODERATE 155T>C Met52Thr
M0141231 PEANLAFE_00011 5793 3 Vaginal 0.75 protein_coding missense_variant MODERATE 142G>A Val48Ile
M0141232 PEANLAFE_00011 5820 3 Vaginal 0.75 protein_coding missense_variant MODERATE 115T>G Phe39Val
M0141233 PEANLAFE_00011 5851 3 Vaginal 0.75 protein_coding synonymous_variant LOW 84T>C Asn28Asn
M0141234 PEANLAFE_00011 5855 3 Vaginal 0.75 protein_coding missense_variant MODERATE 80T>C Val27Ala
M0141235 PEANLAFE_00011 5860 3 Vaginal 0.75 protein_coding synonymous_variant LOW 75C>T Val25Val
M0141236 PEANLAFE_00011 5865 3 Vaginal 0.75 protein_coding missense_variant MODERATE 70C>T Leu24Phe
M0141237 PEANLAFE_00011 5867 3 Vaginal 0.75 protein_coding missense_variant MODERATE 68G>T Cys23Phe
M0141238 PEANLAFE_00011 5877 3 Vaginal 0.75 protein_coding missense_variant MODERATE 58G>A Val20Met
M0141239 PEANLAFE_00012 5959 3 Vaginal 0.75 protein_coding missense_variant MODERATE 942T>G Asp314Glu
M0141240 PEANLAFE_00012 5983 3 Vaginal 0.75 protein_coding synonymous_variant LOW 918T>C Gly306Gly
M0141241 PEANLAFE_00012 6051 3 Vaginal 0.75 protein_coding missense_variant MODERATE 850A>G Thr284Ala
M0141242 PEANLAFE_00012 6070 3 Vaginal 0.75 protein_coding synonymous_variant LOW 831G>A Ala277Ala
M0141243 PEANLAFE_00012 6082 3 Vaginal 0.75 protein_coding synonymous_variant LOW 819A>G Lys273Lys
M0141244 PEANLAFE_00012 6353 3 Vaginal 0.75 protein_coding missense_variant MODERATE 548T>C Val183Ala
M0141245 PEANLAFE_00012 6672 3 Vaginal 0.75 protein_coding synonymous_variant LOW 229C>A Arg77Arg
M0141246 PEANLAFE_00012 6682 3 Vaginal 0.75 protein_coding synonymous_variant LOW 219A>G Lys73Lys
M0141247 PEANLAFE_00012 6702 3 Vaginal 0.75 protein_coding missense_variant MODERATE 199A>G Lys67Glu
M0141248 PEANLAFE_00012 6714 3 Vaginal 0.75 protein_coding missense_variant MODERATE 187A>G Thr63Ala
M0141249 PEANLAFE_00012 6721 3 Vaginal 0.75 protein_coding missense_variant MODERATE 180G>T Lys60Asn
M0141250 PEANLAFE_00012 6798 3 Vaginal 0.75 protein_coding missense_variant MODERATE 103C>G His35Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term